Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:11:21 (682741): wrapper (7.7.26015): starting
02:11:21 (682741): wrapper: running run_atlas (--nthreads 4)
[2025-07-26 02:11:21] Arguments: --nthreads 4
[2025-07-26 02:11:21] Threads: 4
[2025-07-26 02:11:21] Checking for CVMFS
[2025-07-26 02:11:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 02:11:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 02:11:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 02:11:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 02:11:22] 2.13.1.0 3351785 1253 49636 148746 3 57 2217644 4096001 2733 130560 0 3616781 99.997 48158 89 http://s1ihep-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-07-26 02:11:22] CVMFS is ok
[2025-07-26 02:11:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 02:11:22] Checking for apptainer binary...
[2025-07-26 02:11:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 02:11:22] Running /usr/bin/apptainer --version
[2025-07-26 02:11:22] apptainer version 1.4.0
[2025-07-26 02:11:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 02:11:22] Zen
[2025-07-26 02:11:22] apptainer works
[2025-07-26 02:11:22] Set ATHENA_PROC_NUMBER=4
[2025-07-26 02:11:22] Set ATHENA_CORE_NUMBER=4
[2025-07-26 02:11:22] Starting ATLAS job with PandaID=6744945300
[2025-07-26 02:11:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 03:45:46]  *** The last 200 lines of the pilot log: ***
[2025-07-26 03:45:46]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-26 03:45:46]  is_altstaged=None
[2025-07-26 03:45:46]  is_tar=False
[2025-07-26 03:45:46]  lfn=log.45743349._014065.job.log.tgz.1
[2025-07-26 03:45:46]  mtime=0
[2025-07-26 03:45:46]  protocol_id=None
[2025-07-26 03:45:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 03:45:46]  replicas=None
[2025-07-26 03:45:46]  scope=mc23_13p6TeV
[2025-07-26 03:45:46]  status=None
[2025-07-26 03:45:46]  status_code=0
[2025-07-26 03:45:46]  storage_token=
[2025-07-26 03:45:46]  surl=/home/michael/Boinc/BOINC/slots/6/PanDA_Pilot-6744945300/log.45743349._014065.job.log.tgz.1
[2025-07-26 03:45:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/3f/log.45743349._014065.job.log.tgz.1
[2025-07-26 03:45:46]  workdir=None
[2025-07-26 03:45:46] ]
[2025-07-26 03:45:46] 2025-07-25 17:45:09,818 | INFO     | transferring file log.45743349._014065.job.log.tgz.1 from /home/michael/Boinc/BOINC/slots/6/PanDA_Pilot-6744945300/log.45743349._014065.job.log.tgz.1 to /home/mich
[2025-07-26 03:45:46] 2025-07-25 17:45:09,818 | INFO     | executing command: /usr/bin/env mv /home/michael/Boinc/BOINC/slots/6/PanDA_Pilot-6744945300/log.45743349._014065.job.log.tgz.1 /home/michael/Boinc/BOINC/slots/6/lo
[2025-07-26 03:45:46] 2025-07-25 17:45:09,834 | INFO     | adding to output.list: log.45743349._014065.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/3f/log.45743349._014065.job.log.tg
[2025-07-26 03:45:46] 2025-07-25 17:45:09,834 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 03:45:46] 2025-07-25 17:45:09,834 | INFO     | summary of transferred files:
[2025-07-26 03:45:46] 2025-07-25 17:45:09,835 | INFO     |  -- lfn=log.45743349._014065.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 03:45:46] 2025-07-25 17:45:09,835 | INFO     | stage-out finished correctly
[2025-07-26 03:45:46] 2025-07-25 17:45:12,244 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 03:45:46] 2025-07-25 17:45:12,338 | INFO     | job 6744945300 has state=finished
[2025-07-26 03:45:46] 2025-07-25 17:45:12,338 | INFO     | preparing for final server update for job 6744945300 in state='finished'
[2025-07-26 03:45:46] 2025-07-25 17:45:12,338 | INFO     | this job has now completed (state=finished)
[2025-07-26 03:45:46] 2025-07-25 17:45:12,338 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 03:45:46] 2025-07-25 17:45:12,338 | INFO     | log transfer has been attempted: DONE
[2025-07-26 03:45:46] 2025-07-25 17:45:12,339 | INFO     | job 6744945300 has finished - writing final server update
[2025-07-26 03:45:46] 2025-07-25 17:45:12,339 | INFO     | total number of processed events: 400 (read)
[2025-07-26 03:45:46] 2025-07-25 17:45:12,340 | INFO     | executing command: lscpu
[2025-07-26 03:45:46] 2025-07-25 17:45:12,364 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 03:45:46] 2025-07-25 17:45:13,284 | WARNING  | process 693096 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 03:45:46] 2025-07-25 17:45:13,284 | INFO     | using path: /home/michael/Boinc/BOINC/slots/6/PanDA_Pilot-6744945300/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 03:45:46] 2025-07-25 17:45:13,412 | INFO     | number of running child processes to parent process 693096: 1
[2025-07-26 03:45:46] 2025-07-25 17:45:13,412 | INFO     | maximum number of monitored processes: 6
[2025-07-26 03:45:46] 2025-07-25 17:45:14,891 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 03:45:46] 2025-07-25 17:45:14,894 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4330.598291666666
[2025-07-26 03:45:46] 2025-07-25 17:45:14,897 | INFO     | using path: /home/michael/Boinc/BOINC/slots/6/PanDA_Pilot-6744945300/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 03:45:46] 2025-07-25 17:45:14,897 | INFO     | extracted standard info from prmon json
[2025-07-26 03:45:46] 2025-07-25 17:45:14,897 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 03:45:46] 2025-07-25 17:45:14,897 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 03:45:46] 2025-07-25 17:45:14,897 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 03:45:46] 2025-07-25 17:45:14,897 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | fitting pss+swap vs Time
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | sum of square deviations: 190369458.42352936
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | sum of deviations: -454289272.6941166
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | mean x: 1753462785.0823529
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | mean y: 2330359.6705882354
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | -- intersect: 4186716552.3289275
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | intersect: 4186716552.3289275
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | chi2: 0.03019714500149854
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | -- intersect: 4186716552.3289275
[2025-07-26 03:45:46] 2025-07-25 17:45:14,899 | INFO     | current memory leak: -2.39 B/s (using 85 data points, chi2=0.03)
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | could have reported an average CPU frequency of 4317 MHz (7 samples)
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | ..............................
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | . Timing measurements:
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | . get job = 0 s
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | . initial setup = 6 s
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | . payload setup = 5 s
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | . stage-in = 0 s
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | . payload execution = 5590 s
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | . stage-out = 0 s
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | . log creation = 0 s
[2025-07-26 03:45:46] 2025-07-25 17:45:14,900 | INFO     | ..............................
[2025-07-26 03:45:46] 2025-07-25 17:45:14,960 | INFO     | 
[2025-07-26 03:45:46] 2025-07-25 17:45:14,960 | INFO     | job summary report
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | --------------------------------------------------
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | PanDA job id: 6744945300
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | task id: 45743349
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | errors: (none)
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | pilot state: finished 
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | transexitcode: 0
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | exeerrorcode: 0
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | exeerrordiag: 
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | exitcode: 0
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | exitmsg: OK
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | cpuconsumptiontime: 21333 s
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | nevents: 400
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | neventsw: 0
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | pid: 693096
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | pgrp: 693096
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | corecount: 4
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | event service: False
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | sizes: {0: 2397313, 1: 2397512, 3: 2397774, 11: 2397802, 5599: 2424549, 5601: 2433569, 5603: 2433753, 5606: 2433947}
[2025-07-26 03:45:46] 2025-07-25 17:45:14,961 | INFO     | --------------------------------------------------
[2025-07-26 03:45:46] 2025-07-25 17:45:14,962 | INFO     | 
[2025-07-26 03:45:46] 2025-07-25 17:45:14,962 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/6
[2025-07-26 03:45:46] 2025-07-25 17:45:14,978 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,978 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,978 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,978 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,978 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | job 6744945300 has completed (purged errors)
[2025-07-26 03:45:46] 2025-07-25 17:45:14,979 | INFO     | overall cleanup function is called
[2025-07-26 03:45:46] 2025-07-25 17:45:15,986 | INFO     | --- collectZombieJob: --- 10, [693096]
[2025-07-26 03:45:46] 2025-07-25 17:45:15,987 | INFO     | zombie collector waiting for pid 693096
[2025-07-26 03:45:46] 2025-07-25 17:45:15,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 03:45:46] 2025-07-25 17:45:15,987 | INFO     | collected zombie processes
[2025-07-26 03:45:46] 2025-07-25 17:45:15,987 | INFO     | will attempt to kill all subprocesses of pid=693096
[2025-07-26 03:45:46] 2025-07-25 17:45:16,120 | INFO     | process IDs to be killed: [693096] (in reverse order)
[2025-07-26 03:45:46] 2025-07-25 17:45:16,166 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 03:45:46] 2025-07-25 17:45:16,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 03:45:46] 2025-07-25 17:45:16,170 | INFO     | did not find any defunct processes belonging to 693096
[2025-07-26 03:45:46] 2025-07-25 17:45:16,173 | INFO     | did not find any defunct processes belonging to 693096
[2025-07-26 03:45:46] 2025-07-25 17:45:16,173 | INFO     | ready for new job
[2025-07-26 03:45:46] 2025-07-25 17:45:16,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 03:45:46] 2025-07-25 17:45:16,174 | INFO     | ***************************************
[2025-07-26 03:45:46] 2025-07-25 17:45:16,174 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 03:45:46] 2025-07-25 17:45:16,174 | INFO     | ***************************************
[2025-07-26 03:45:46] 2025-07-25 17:45:16,174 | INFO     | 
[2025-07-26 03:45:46] 2025-07-25 17:45:16,175 | INFO     | architecture information:
[2025-07-26 03:45:46] 2025-07-25 17:45:16,176 | INFO     | executing command: cat /etc/os-release
[2025-07-26 03:45:46] 2025-07-25 17:45:16,188 | INFO     | cat /etc/os-release:
[2025-07-26 03:45:46] NAME="CentOS Linux"
[2025-07-26 03:45:46] VERSION="7 (Core)"
[2025-07-26 03:45:46] ID="centos"
[2025-07-26 03:45:46] ID_LIKE="rhel fedora"
[2025-07-26 03:45:46] VERSION_ID="7"
[2025-07-26 03:45:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 03:45:46] ANSI_COLOR="0;31"
[2025-07-26 03:45:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 03:45:46] HOME_URL="https://www.centos.org/"
[2025-07-26 03:45:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 03:45:46] 
[2025-07-26 03:45:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 03:45:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 03:45:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 03:45:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 03:45:46] 
[2025-07-26 03:45:46] 2025-07-25 17:45:16,188 | INFO     | ***************************************
[2025-07-26 03:45:46] 2025-07-25 17:45:16,691 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/6
[2025-07-26 03:45:46] 2025-07-25 17:45:16,706 | INFO     | sufficient remaining disk space (201777479680 B)
[2025-07-26 03:45:46] 2025-07-25 17:45:16,706 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 03:45:46] 2025-07-25 17:45:16,707 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 03:45:46] 2025-07-25 17:45:16,707 | INFO     | update_server=False
[2025-07-26 03:45:46] 2025-07-25 17:45:16,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 03:45:46] 2025-07-25 17:45:16,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 03:45:46] 2025-07-25 17:45:16,843 | INFO     | all payload control threads have been joined
[2025-07-26 03:45:46] 2025-07-25 17:45:16,920 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 03:45:46] 2025-07-25 17:45:16,920 | INFO     | aborting loop
[2025-07-26 03:45:46] 2025-07-25 17:45:17,216 | INFO     | all job control threads have been joined
[2025-07-26 03:45:46] 2025-07-25 17:45:17,521 | INFO     | all data control threads have been joined
[2025-07-26 03:45:46] 2025-07-25 17:45:17,712 | INFO     | [job] retrieve thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:17,712 | INFO     | [job] queue monitor thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:17,849 | INFO     | [payload] control thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:17,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 03:45:46] 2025-07-25 17:45:17,923 | INFO     | [job] job monitor thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:18,221 | INFO     | [job] control thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:18,259 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:18,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 03:45:46] 2025-07-25 17:45:18,474 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:18,475 | INFO     | [job] validate thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:18,527 | INFO     | [data] control thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:18,558 | INFO     | [data] copytool_in thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:18,597 | INFO     | [payload] failed_post thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:18,640 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:19,045 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:19,217 | INFO     | [payload] validate_post thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:19,915 | INFO     | [data] copytool_out thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:22,314 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 03:45:46] 2025-07-25 17:45:22,659 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134603632219968)>', '<ExcThread(monitor, started 134602991593216)>']
[2025-07-26 03:45:46] 2025-07-25 17:45:27,684 | INFO     | all workflow threads have been joined
[2025-07-26 03:45:46] 2025-07-25 17:45:27,685 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 03:45:46] 2025-07-25 17:45:27,685 | INFO     | traces error code: 0
[2025-07-26 03:45:46] 2025-07-25 17:45:27,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 03:45:46] 2025-07-25 17:45:46,845 | INFO     | PID=686470 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 03:45:46] 2025-07-25 17:45:46,845 | INFO     | .. there are 4 such processes running
[2025-07-26 03:45:46] 2025-07-25 17:45:46,845 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 03:45:46] 2025-07-25 17:45:46,845 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 03:45:46] 2025-07-25 17:45:46,846 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 03:45:46] 2025-07-25 17:45:46,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 03:45:46] 2025-07-25 17:45:46,846 | INFO     | [monitor] control thread has ended
[2025-07-26 03:45:46] 2025-07-25 17:45:46,896 [wrapper] ==== pilot stdout END ====
[2025-07-26 03:45:46] 2025-07-25 17:45:46,897 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 03:45:46] 2025-07-25 17:45:46,899 [wrapper] pilotpid: 686470
[2025-07-26 03:45:46] 2025-07-25 17:45:46,900 [wrapper] Pilot exit status: 0
[2025-07-26 03:45:46] 2025-07-25 17:45:46,906 [wrapper] pandaids: 6744945300
[2025-07-26 03:45:46] 2025-07-25 17:45:46,927 [wrapper] cleanup supervisor_pilot  788082 686471
[2025-07-26 03:45:46] 2025-07-25 17:45:46,929 [wrapper] Test setup, not cleaning
[2025-07-26 03:45:46] 2025-07-25 17:45:46,930 [wrapper] apfmon messages muted
[2025-07-26 03:45:46] 2025-07-25 17:45:46,931 [wrapper] ==== wrapper stdout END ====
[2025-07-26 03:45:46] 2025-07-25 17:45:46,933 [wrapper] ==== wrapper stderr END ====
[2025-07-26 03:45:46]  *** Error codes and diagnostics ***
[2025-07-26 03:45:46]     "exeErrorCode": 0,
[2025-07-26 03:45:46]     "exeErrorDiag": "",
[2025-07-26 03:45:46]     "pilotErrorCode": 0,
[2025-07-26 03:45:46]     "pilotErrorDiag": "",
[2025-07-26 03:45:46]  *** Listing of results directory ***
[2025-07-26 03:45:46] total 351548
[2025-07-26 03:45:46] -rw-r--r-- 1 michael michael    530466 Jul 25 11:09 pilot3.tar.gz
[2025-07-26 03:45:46] -rw-r--r-- 1 michael michael      5112 Jul 25 11:16 queuedata.json
[2025-07-26 03:45:46] -rwx------ 1 michael michael     36292 Jul 25 11:16 runpilot2-wrapper.sh
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael       100 Jul 26 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 03:45:46] -rwxr-xr-x 1 michael michael      7986 Jul 26 02:11 run_atlas
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael       105 Jul 26 02:11 job.xml
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael      9861 Jul 26 02:11 init_data.xml
[2025-07-26 03:45:46] -rw-r--r-- 2 michael michael 148001462 Jul 26 02:11 EVNT.45743347._000772.pool.root.1
[2025-07-26 03:45:46] -rw-r--r-- 2 michael michael     15095 Jul 26 02:11 start_atlas.sh
[2025-07-26 03:45:46] drwxrwx--x 2 michael michael      4096 Jul 26 02:11 shared
[2025-07-26 03:45:46] -rw-r--r-- 2 michael michael    542890 Jul 26 02:11 input.tar.gz
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael         0 Jul 26 02:11 boinc_lockfile
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael      2562 Jul 26 02:11 pandaJob.out
[2025-07-26 03:45:46] -rw------- 1 michael michael    979317 Jul 26 02:11 agis_schedconf.cvmfs.json
[2025-07-26 03:45:46] -rw------- 1 michael michael   1593052 Jul 26 02:11 agis_ddmendpoints.agis.ALL.json
[2025-07-26 03:45:46] drwx------ 4 michael michael      4096 Jul 26 02:11 pilot3
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael       529 Jul 26 03:44 boinc_task_state.xml
[2025-07-26 03:45:46] -rw------- 1 michael michael 206482939 Jul 26 03:44 HITS.45743349._014065.pool.root.1
[2025-07-26 03:45:46] -rw------- 1 michael michael      1033 Jul 26 03:45 memory_monitor_summary.json
[2025-07-26 03:45:46] -rw------- 1 michael michael    249497 Jul 26 03:45 log.45743349._014065.job.log.tgz.1
[2025-07-26 03:45:46] -rw------- 1 michael michael      7720 Jul 26 03:45 heartbeat.json
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael      8192 Jul 26 03:45 boinc_mmap_file
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael        27 Jul 26 03:45 wrapper_checkpoint.txt
[2025-07-26 03:45:46] -rw------- 1 michael michael        95 Jul 26 03:45 pilot_heartbeat.json
[2025-07-26 03:45:46] -rw------- 1 michael michael       821 Jul 26 03:45 pilotlog.txt
[2025-07-26 03:45:46] -rw------- 1 michael michael    560135 Jul 26 03:45 log.45743349._014065.job.log.1
[2025-07-26 03:45:46] -rw------- 1 michael michael       357 Jul 26 03:45 output.list
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael       620 Jul 26 03:45 runtime_log
[2025-07-26 03:45:46] -rw------- 1 michael michael    829440 Jul 26 03:45 result.tar.gz
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael      8754 Jul 26 03:45 runtime_log.err
[2025-07-26 03:45:46] -rw------- 1 michael michael       640 Jul 26 03:45 Lq2NDm3DMz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyNOLDmcGS0Rn.diag
[2025-07-26 03:45:46] -rw-rw-r-- 1 michael michael     21206 Jul 26 03:45 stderr.txt
[2025-07-26 03:45:46] HITS file was successfully produced:
[2025-07-26 03:45:46] -rw------- 1 michael michael 206482939 Jul 26 03:44 shared/HITS.pool.root.1
[2025-07-26 03:45:46]  *** Contents of shared directory: ***
[2025-07-26 03:45:46] total 347548
[2025-07-26 03:45:46] -rw-r--r-- 2 michael michael 148001462 Jul 26 02:11 ATLAS.root_0
[2025-07-26 03:45:46] -rw-r--r-- 2 michael michael     15095 Jul 26 02:11 start_atlas.sh
[2025-07-26 03:45:46] -rw-r--r-- 2 michael michael    542890 Jul 26 02:11 input.tar.gz
[2025-07-26 03:45:46] -rw------- 1 michael michael 206482939 Jul 26 03:44 HITS.pool.root.1
[2025-07-26 03:45:46] -rw------- 1 michael michael    829440 Jul 26 03:45 result.tar.gz
03:45:48 (682741): run_atlas exited; CPU time 21387.004439
03:45:48 (682741): called boinc_finish(0)

</stderr_txt>
]]>

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