Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:40:13 (578861): wrapper (7.7.26015): starting
08:40:13 (578861): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 08:40:14] Arguments: --nthreads 8
[2025-07-25 08:40:14] Threads: 8
[2025-07-25 08:40:14] Checking for CVMFS
[2025-07-25 08:40:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 08:40:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 08:40:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 08:40:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 08:40:15] 2.12.6.0 1904412 15512 377820 148741 2 367 29309738 32503809 29496 16776704 0 91298938 99.513 133035281 18532 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 08:40:15] CVMFS is ok
[2025-07-25 08:40:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 08:40:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 08:40:15] Further information can be found at the LHC@home message board.
[2025-07-25 08:40:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 08:40:15] Checking for apptainer binary...
[2025-07-25 08:40:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 08:40:15] Running /usr/bin/apptainer --version
[2025-07-25 08:40:15] apptainer version 1.4.1-1.el9
[2025-07-25 08:40:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 08:40:15] c7-7-36.aglt2.org
[2025-07-25 08:40:15] apptainer works
[2025-07-25 08:40:15] Set ATHENA_PROC_NUMBER=8
[2025-07-25 08:40:15] Set ATHENA_CORE_NUMBER=8
[2025-07-25 08:40:16] Starting ATLAS job with PandaID=6744953816
[2025-07-25 08:40:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:48:17 (1287586): wrapper (7.7.26015): starting
10:48:17 (1287586): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 10:48:17] Arguments: --nthreads 8
[2025-07-25 10:48:17] Threads: 8
[2025-07-25 10:48:17] This job has been restarted, cleaning up previous attempt
[2025-07-25 10:48:17] Checking for CVMFS
[2025-07-25 10:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 10:48:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 10:48:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 10:48:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 10:48:17] 2.12.6.0 1904412 15640 381044 148744 3 580 30489998 32503808 29280 16776704 0 92038137 99.515 133387037 18532 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 10:48:17] CVMFS is ok
[2025-07-25 10:48:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 10:48:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 10:48:17] Further information can be found at the LHC@home message board.
[2025-07-25 10:48:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 10:48:17] Checking for apptainer binary...
[2025-07-25 10:48:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 10:48:17] Running /usr/bin/apptainer --version
[2025-07-25 10:48:17] apptainer version 1.4.1-1.el9
[2025-07-25 10:48:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 10:48:17] c7-7-36.aglt2.org
[2025-07-25 10:48:17] apptainer works
[2025-07-25 10:48:17] Set ATHENA_PROC_NUMBER=8
[2025-07-25 10:48:17] Set ATHENA_CORE_NUMBER=8
[2025-07-25 10:48:18] Starting ATLAS job with PandaID=6744953816
[2025-07-25 10:48:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 14:53:53]  *** The last 200 lines of the pilot log: ***
[2025-07-25 14:53:53] 2025-07-25 18:53:20,961 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 14:53:53] 2025-07-25 18:53:20,961 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 14:53:53] 2025-07-25 18:53:20,962 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 14:53:53] 2025-07-25 18:53:20,962 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 14:53:53] 2025-07-25 18:53:20,965 | INFO     | fitting pss+swap vs Time
[2025-07-25 14:53:53] 2025-07-25 18:53:20,966 | INFO     | sum of square deviations: 4340384977.850636
[2025-07-25 14:53:53] 2025-07-25 18:53:20,967 | INFO     | sum of deviations: 19442869246.796677
[2025-07-25 14:53:53] 2025-07-25 18:53:20,967 | INFO     | mean x: 1753462263.0248964
[2025-07-25 14:53:53] 2025-07-25 18:53:20,968 | INFO     | mean y: 2164330.867219917
[2025-07-25 14:53:53] 2025-07-25 18:53:20,968 | INFO     | -- intersect: -7852516229.304618
[2025-07-25 14:53:53] 2025-07-25 18:53:20,968 | INFO     | intersect: -7852516229.304618
[2025-07-25 14:53:53] 2025-07-25 18:53:20,968 | INFO     | chi2: 2.1167295877781696
[2025-07-25 14:53:53] 2025-07-25 18:53:20,968 | INFO     | sum of square deviations: 4075805102.8474545
[2025-07-25 14:53:53] 2025-07-25 18:53:20,970 | INFO     | sum of deviations: 32542683512.881382
[2025-07-25 14:53:53] 2025-07-25 18:53:20,970 | INFO     | mean x: 1753462110.5254238
[2025-07-25 14:53:53] 2025-07-25 18:53:20,970 | INFO     | mean y: 2171741.936440678
[2025-07-25 14:53:53] 2025-07-25 18:53:20,970 | INFO     | -- intersect: -13998095953.59021
[2025-07-25 14:53:53] 2025-07-25 18:53:20,970 | INFO     | intersect: -13998095953.59021
[2025-07-25 14:53:53] 2025-07-25 18:53:20,970 | INFO     | chi2: 1.4402616655618794
[2025-07-25 14:53:53] 2025-07-25 18:53:20,971 | INFO     | current chi2=1.4402616655618794 (change=31.958164430740837 %)
[2025-07-25 14:53:53] 2025-07-25 18:53:20,971 | INFO     | sum of square deviations: 3822202177.84417
[2025-07-25 14:53:53] 2025-07-25 18:53:20,972 | INFO     | sum of deviations: 30640394654.636368
[2025-07-25 14:53:53] 2025-07-25 18:53:20,972 | INFO     | mean x: 1753461958.025974
[2025-07-25 14:53:53] 2025-07-25 18:53:20,972 | INFO     | mean y: 2170600.727272727
[2025-07-25 14:53:53] 2025-07-25 18:53:20,972 | INFO     | -- intersect: -14054324557.284145
[2025-07-25 14:53:53] 2025-07-25 18:53:20,972 | INFO     | intersect: -14054324557.284145
[2025-07-25 14:53:53] 2025-07-25 18:53:20,973 | INFO     | chi2: 1.4399081340030049
[2025-07-25 14:53:53] 2025-07-25 18:53:20,973 | INFO     | current chi2=1.4399081340030049 (change=0.024546342329857085 %)
[2025-07-25 14:53:53] 2025-07-25 18:53:20,973 | INFO     | right removable region: 230
[2025-07-25 14:53:53] 2025-07-25 18:53:20,973 | INFO     | sum of square deviations: 4075801442.8474545
[2025-07-25 14:53:53] 2025-07-25 18:53:20,975 | INFO     | sum of deviations: -9934833113.0678
[2025-07-25 14:53:53] 2025-07-25 18:53:20,975 | INFO     | mean x: 1753462415.5254238
[2025-07-25 14:53:53] 2025-07-25 18:53:20,975 | INFO     | mean y: 2181090.9279661016
[2025-07-25 14:53:53] 2025-07-25 18:53:20,975 | INFO     | -- intersect: 4276274594.3915563
[2025-07-25 14:53:53] 2025-07-25 18:53:20,975 | INFO     | intersect: 4276274594.3915563
[2025-07-25 14:53:53] 2025-07-25 18:53:20,975 | INFO     | chi2: 0.8267183193230736
[2025-07-25 14:53:53] 2025-07-25 18:53:20,975 | INFO     | current chi2=0.8267183193230736 (change=60.943602617146745 %)
[2025-07-25 14:53:53] 2025-07-25 18:53:20,976 | INFO     | sum of square deviations: 3822194857.84417
[2025-07-25 14:53:53] 2025-07-25 18:53:20,977 | INFO     | sum of deviations: -10403860598.246754
[2025-07-25 14:53:53] 2025-07-25 18:53:20,977 | INFO     | mean x: 1753462568.025974
[2025-07-25 14:53:53] 2025-07-25 18:53:20,977 | INFO     | mean y: 2181372.2077922076
[2025-07-25 14:53:53] 2025-07-25 18:53:20,977 | INFO     | -- intersect: 4775035923.185724
[2025-07-25 14:53:53] 2025-07-25 18:53:20,977 | INFO     | intersect: 4775035923.185724
[2025-07-25 14:53:53] 2025-07-25 18:53:20,978 | INFO     | chi2: 0.8263007956624555
[2025-07-25 14:53:53] 2025-07-25 18:53:20,978 | INFO     | current chi2=0.8263007956624555 (change=0.05050373880186472 %)
[2025-07-25 14:53:53] 2025-07-25 18:53:20,978 | INFO     | left removable region: 20
[2025-07-25 14:53:53] 2025-07-25 18:53:20,978 | INFO     | sum of square deviations: 2871675076.328571
[2025-07-25 14:53:53] 2025-07-25 18:53:20,979 | INFO     | sum of deviations: 6488887721.328572
[2025-07-25 14:53:53] 2025-07-25 18:53:20,979 | INFO     | mean x: 1753462537.5285714
[2025-07-25 14:53:53] 2025-07-25 18:53:20,979 | INFO     | mean y: 2184617.1952380952
[2025-07-25 14:53:53] 2025-07-25 18:53:20,979 | INFO     | -- intersect: -3959970301.851369
[2025-07-25 14:53:53] 2025-07-25 18:53:20,979 | INFO     | intersect: -3959970301.851369
[2025-07-25 14:53:53] 2025-07-25 18:53:20,980 | INFO     | chi2: 0.1110612537010543
[2025-07-25 14:53:53] 2025-07-25 18:53:20,980 | INFO     | -- intersect: -3959970301.851369
[2025-07-25 14:53:53] 2025-07-25 18:53:20,980 | INFO     | current memory leak: 2.26 B/s (using 210 data points, chi2=0.11)
[2025-07-25 14:53:53] 2025-07-25 18:53:20,980 | INFO     | could have reported an average CPU frequency of 3186 MHz (12 samples)
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | ..............................
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | . Timing measurements:
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | . get job = 0 s
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | . initial setup = 1 s
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | . payload setup = 8 s
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | . stage-in = 0 s
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | . payload execution = 14651 s
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | . stage-out = 2 s
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | . log creation = 0 s
[2025-07-25 14:53:53] 2025-07-25 18:53:20,981 | INFO     | ..............................
[2025-07-25 14:53:53] 2025-07-25 18:53:21,060 | INFO     | 
[2025-07-25 14:53:53] 2025-07-25 18:53:21,060 | INFO     | job summary report
[2025-07-25 14:53:53] 2025-07-25 18:53:21,060 | INFO     | --------------------------------------------------
[2025-07-25 14:53:53] 2025-07-25 18:53:21,060 | INFO     | PanDA job id: 6744953816
[2025-07-25 14:53:53] 2025-07-25 18:53:21,060 | INFO     | task id: 45743349
[2025-07-25 14:53:53] 2025-07-25 18:53:21,060 | INFO     | errors: (none)
[2025-07-25 14:53:53] 2025-07-25 18:53:21,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 14:53:53] 2025-07-25 18:53:21,060 | INFO     | pilot state: finished 
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | transexitcode: 0
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | exeerrorcode: 0
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | exeerrordiag: 
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | exitcode: 0
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | exitmsg: OK
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | cpuconsumptiontime: 38957 s
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | nevents: 400
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | neventsw: 0
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | pid: 1317849
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | pgrp: 1317849
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | corecount: 8
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | event service: False
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | sizes: {0: 2397473, 6: 2397735, 11: 2397763, 14664: 2428866, 14667: 2437920, 14675: 2438058}
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | --------------------------------------------------
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | 
[2025-07-25 14:53:53] 2025-07-25 18:53:21,061 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-25 14:53:53] 2025-07-25 18:53:21,083 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,084 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,085 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,085 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,085 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,085 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 14:53:53] 2025-07-25 18:53:21,085 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,085 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 14:53:53] 2025-07-25 18:53:21,085 | INFO     | job 6744953816 has completed (purged errors)
[2025-07-25 14:53:53] 2025-07-25 18:53:21,085 | INFO     | overall cleanup function is called
[2025-07-25 14:53:53] 2025-07-25 18:53:22,094 | INFO     | --- collectZombieJob: --- 10, [1317849]
[2025-07-25 14:53:53] 2025-07-25 18:53:22,094 | INFO     | zombie collector waiting for pid 1317849
[2025-07-25 14:53:53] 2025-07-25 18:53:22,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 14:53:53] 2025-07-25 18:53:22,095 | INFO     | collected zombie processes
[2025-07-25 14:53:53] 2025-07-25 18:53:22,095 | INFO     | will attempt to kill all subprocesses of pid=1317849
[2025-07-25 14:53:53] 2025-07-25 18:53:22,648 | INFO     | process IDs to be killed: [1317849] (in reverse order)
[2025-07-25 14:53:53] 2025-07-25 18:53:22,834 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 14:53:53] 2025-07-25 18:53:22,834 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 14:53:53] 2025-07-25 18:53:22,857 | INFO     | did not find any defunct processes belonging to 1317849
[2025-07-25 14:53:53] 2025-07-25 18:53:22,881 | INFO     | did not find any defunct processes belonging to 1317849
[2025-07-25 14:53:53] 2025-07-25 18:53:22,881 | INFO     | ready for new job
[2025-07-25 14:53:53] 2025-07-25 18:53:22,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 14:53:53] 2025-07-25 18:53:22,883 | INFO     | ***************************************
[2025-07-25 14:53:53] 2025-07-25 18:53:22,885 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 14:53:53] 2025-07-25 18:53:22,885 | INFO     | ***************************************
[2025-07-25 14:53:53] 2025-07-25 18:53:22,885 | INFO     | 
[2025-07-25 14:53:53] 2025-07-25 18:53:22,902 | INFO     | architecture information:
[2025-07-25 14:53:53] 2025-07-25 18:53:22,902 | INFO     | executing command: cat /etc/os-release
[2025-07-25 14:53:53] 2025-07-25 18:53:22,921 | INFO     | cat /etc/os-release:
[2025-07-25 14:53:53] NAME="CentOS Linux"
[2025-07-25 14:53:53] VERSION="7 (Core)"
[2025-07-25 14:53:53] ID="centos"
[2025-07-25 14:53:53] ID_LIKE="rhel fedora"
[2025-07-25 14:53:53] VERSION_ID="7"
[2025-07-25 14:53:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 14:53:53] ANSI_COLOR="0;31"
[2025-07-25 14:53:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 14:53:53] HOME_URL="https://www.centos.org/"
[2025-07-25 14:53:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 14:53:53] 
[2025-07-25 14:53:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 14:53:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 14:53:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 14:53:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 14:53:53] 
[2025-07-25 14:53:53] 2025-07-25 18:53:22,922 | INFO     | ***************************************
[2025-07-25 14:53:53] 2025-07-25 18:53:23,425 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-25 14:53:53] 2025-07-25 18:53:23,444 | INFO     | sufficient remaining disk space (95857672192 B)
[2025-07-25 14:53:53] 2025-07-25 18:53:23,444 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 14:53:53] 2025-07-25 18:53:23,444 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 14:53:53] 2025-07-25 18:53:23,445 | INFO     | update_server=False
[2025-07-25 14:53:53] 2025-07-25 18:53:23,445 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 14:53:53] 2025-07-25 18:53:23,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 14:53:53] 2025-07-25 18:53:23,445 | INFO     | aborting loop
[2025-07-25 14:53:53] 2025-07-25 18:53:23,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 14:53:53] 2025-07-25 18:53:23,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 14:53:53] 2025-07-25 18:53:23,626 | INFO     | all data control threads have been joined
[2025-07-25 14:53:53] 2025-07-25 18:53:24,452 | INFO     | [job] retrieve thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:24,458 | INFO     | [job] job monitor thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:24,452 | INFO     | all payload control threads have been joined
[2025-07-25 14:53:53] 2025-07-25 18:53:24,563 | INFO     | [data] copytool_in thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:24,641 | INFO     | [data] control thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:24,982 | INFO     | all job control threads have been joined
[2025-07-25 14:53:53] 2025-07-25 18:53:25,174 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:25,181 | INFO     | [job] validate thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:25,357 | INFO     | [payload] validate_post thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:25,454 | INFO     | [data] copytool_out thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:25,471 | INFO     | [payload] control thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:25,622 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:25,847 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:25,856 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:25,973 | INFO     | [payload] failed_post thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:25,987 | INFO     | [job] control thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:26,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 14:53:53] 2025-07-25 18:53:27,075 | INFO     | [job] queue monitor thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:27,453 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 14:53:53] 2025-07-25 18:53:28,566 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139625465763648)>', '<ExcThread(monitor, started 139625116968704)>']
[2025-07-25 14:53:53] 2025-07-25 18:53:33,594 | INFO     | all workflow threads have been joined
[2025-07-25 14:53:53] 2025-07-25 18:53:33,594 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 14:53:53] 2025-07-25 18:53:33,595 | INFO     | traces error code: 0
[2025-07-25 14:53:53] 2025-07-25 18:53:33,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 14:53:53] 2025-07-25 18:53:53,228 | INFO     | PID=1298466 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 14:53:53] 2025-07-25 18:53:53,228 | INFO     | .. there are 35 such processes running
[2025-07-25 14:53:53] 2025-07-25 18:53:53,229 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 14:53:53] 2025-07-25 18:53:53,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 14:53:53] 2025-07-25 18:53:53,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 14:53:53] 2025-07-25 18:53:53,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 14:53:53] 2025-07-25 18:53:53,229 | INFO     | [monitor] control thread has ended
[2025-07-25 14:53:53] 2025-07-25 18:53:53,379 [wrapper] ==== pilot stdout END ====
[2025-07-25 14:53:53] 2025-07-25 18:53:53,384 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 14:53:53] 2025-07-25 18:53:53,386 [wrapper] pilotpid: 1298466
[2025-07-25 14:53:53] 2025-07-25 18:53:53,389 [wrapper] Pilot exit status: 0
[2025-07-25 14:53:53] 2025-07-25 18:53:53,399 [wrapper] pandaids: 6744953816 6744953816
[2025-07-25 14:53:53] 2025-07-25 18:53:53,540 [wrapper] cleanup supervisor_pilot 2917734 1298467
[2025-07-25 14:53:53] 2025-07-25 18:53:53,556 [wrapper] Test setup, not cleaning
[2025-07-25 14:53:53] 2025-07-25 18:53:53,583 [wrapper] apfmon messages muted
[2025-07-25 14:53:53] 2025-07-25 18:53:53,597 [wrapper] ==== wrapper stdout END ====
[2025-07-25 14:53:53] 2025-07-25 18:53:53,600 [wrapper] ==== wrapper stderr END ====
[2025-07-25 14:53:53]  *** Error codes and diagnostics ***
[2025-07-25 14:53:53]     "exeErrorCode": 0,
[2025-07-25 14:53:53]     "exeErrorDiag": "",
[2025-07-25 14:53:53]     "pilotErrorCode": 0,
[2025-07-25 14:53:53]     "pilotErrorDiag": "",
[2025-07-25 14:53:53]  *** Listing of results directory ***
[2025-07-25 14:53:53] total 499164
[2025-07-25 14:53:53] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 02:05 pilot3.tar.gz
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 02:27 queuedata.json
[2025-07-25 14:53:53] -rwx------. 1 boincer umatlas     36292 Jul 25 02:28 runpilot2-wrapper.sh
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas       100 Jul 25 08:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 14:53:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 08:40 run_atlas
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas       105 Jul 25 08:40 job.xml
[2025-07-25 14:53:53] -rw-r--r--. 3 boincer umatlas 145142691 Jul 25 08:40 EVNT.45743347._001105.pool.root.1
[2025-07-25 14:53:53] -rw-r--r--. 3 boincer umatlas 145142691 Jul 25 08:40 ATLAS.root_0
[2025-07-25 14:53:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 08:40 start_atlas.sh
[2025-07-25 14:53:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 08:40 shared
[2025-07-25 14:53:53] -rw-r--r--. 2 boincer umatlas    542898 Jul 25 08:40 input.tar.gz
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas         0 Jul 25 08:40 boinc_lockfile
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 10:48 pandaJob.out
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas    979325 Jul 25 10:48 agis_schedconf.cvmfs.json
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas      6935 Jul 25 14:46 init_data.xml
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas 213637905 Jul 25 14:52 HITS.45743349._017294.pool.root.1
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas       531 Jul 25 14:52 boinc_task_state.xml
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas      1050 Jul 25 14:53 memory_monitor_summary.json
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas   1593052 Jul 25 14:53 agis_ddmendpoints.agis.ALL.json
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas    393212 Jul 25 14:53 log.45743349._017294.job.log.tgz.1
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas      7802 Jul 25 14:53 heartbeat.json
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas        28 Jul 25 14:53 wrapper_checkpoint.txt
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 14:53 boinc_mmap_file
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas        96 Jul 25 14:53 pilot_heartbeat.json
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas       823 Jul 25 14:53 pilotlog.txt
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas   1272409 Jul 25 14:53 log.45743349._017294.job.log.1
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas       357 Jul 25 14:53 output.list
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas       620 Jul 25 14:53 runtime_log
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas   1689600 Jul 25 14:53 result.tar.gz
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas      8741 Jul 25 14:53 runtime_log.err
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas       784 Jul 25 14:53 R5tKDmY6Qz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmgZyKDmqjtGyn.diag
[2025-07-25 14:53:53] -rw-r--r--. 1 boincer umatlas     23139 Jul 25 14:53 stderr.txt
[2025-07-25 14:53:53] HITS file was successfully produced:
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas 213637905 Jul 25 14:52 shared/HITS.pool.root.1
[2025-07-25 14:53:53]  *** Contents of shared directory: ***
[2025-07-25 14:53:53] total 352584
[2025-07-25 14:53:53] -rw-r--r--. 3 boincer umatlas 145142691 Jul 25 08:40 ATLAS.root_0
[2025-07-25 14:53:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 08:40 start_atlas.sh
[2025-07-25 14:53:53] -rw-r--r--. 2 boincer umatlas    542898 Jul 25 08:40 input.tar.gz
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas 213637905 Jul 25 14:52 HITS.pool.root.1
[2025-07-25 14:53:53] -rw-------. 1 boincer umatlas   1689600 Jul 25 14:53 result.tar.gz
14:53:55 (1287586): run_atlas exited; CPU time 39633.965198
14:53:55 (1287586): called boinc_finish(0)

</stderr_txt>
]]>

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