Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:16:07 (3592897): wrapper (7.7.26015): starting
00:16:07 (3592897): wrapper: running run_atlas (--nthreads 6)
[2025-07-26 00:16:07] Arguments: --nthreads 6
[2025-07-26 00:16:07] Threads: 6
[2025-07-26 00:16:07] Checking for CVMFS
[2025-07-26 00:16:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 00:16:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 00:16:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 00:16:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 00:16:08] 2.11.5.0 2723278 1063 68176 148744 1 188 51419492 52428800 1858 130560 0 2414953 99.997 37317 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-07-26 00:16:08] CVMFS is ok
[2025-07-26 00:16:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 00:16:08] Checking for apptainer binary...
[2025-07-26 00:16:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 00:16:08] Running /usr/bin/apptainer --version
[2025-07-26 00:16:08] apptainer version 1.3.5-1.el9
[2025-07-26 00:16:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 00:16:08] testio008
[2025-07-26 00:16:08] apptainer works
[2025-07-26 00:16:08] Set ATHENA_PROC_NUMBER=6
[2025-07-26 00:16:08] Set ATHENA_CORE_NUMBER=6
[2025-07-26 00:16:08] Starting ATLAS job with PandaID=6744952950
[2025-07-26 00:16:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 01:36:45]  *** The last 200 lines of the pilot log: ***
[2025-07-26 01:36:45] 2025-07-25 16:35:34,221 | INFO     | monitor loop #376: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:34,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:36,724 | INFO     | monitor loop #377: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:36,724 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:39,227 | INFO     | monitor loop #378: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:39,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:41,730 | INFO     | monitor loop #379: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:41,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:44,232 | INFO     | monitor loop #380: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:44,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:44,999 | INFO     | PID=3596601 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 01:36:45] 2025-07-25 16:35:44,999 | INFO     | .. there are 3 such processes running
[2025-07-26 01:36:45] 2025-07-25 16:35:46,735 | INFO     | monitor loop #381: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:46,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:49,237 | INFO     | monitor loop #382: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:49,237 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:51,739 | INFO     | monitor loop #383: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:51,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:54,242 | INFO     | monitor loop #384: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:54,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:56,745 | INFO     | monitor loop #385: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:56,745 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:35:59,248 | INFO     | monitor loop #386: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:35:59,248 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:36:01,751 | INFO     | monitor loop #387: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:36:01,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:36:04,254 | INFO     | monitor loop #388: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:36:04,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:36:06,757 | INFO     | monitor loop #389: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:36:06,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:36:07,127 | INFO     | PID=3596601 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 01:36:45] 2025-07-25 16:36:07,127 | INFO     | .. there are 3 such processes running
[2025-07-26 01:36:45] 2025-07-25 16:36:09,260 | INFO     | monitor loop #390: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:36:09,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:36:11,763 | INFO     | monitor loop #391: job 0:6744952950 is in state 'finished'
[2025-07-26 01:36:45] 2025-07-25 16:36:11,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:45] 2025-07-25 16:36:12,917 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 01:36:45] 2025-07-25 16:36:12,918 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4099.1272
[2025-07-26 01:36:45] 2025-07-25 16:36:12,920 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6744952950/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 01:36:45] 2025-07-25 16:36:12,920 | INFO     | extracted standard info from prmon json
[2025-07-26 01:36:45] 2025-07-25 16:36:12,920 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 01:36:45] 2025-07-25 16:36:12,920 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 01:36:45] 2025-07-25 16:36:12,920 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 01:36:45] 2025-07-25 16:36:12,920 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | fitting pss+swap vs Time
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | sum of square deviations: 106336877.5
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | sum of deviations: 15329738895.000002
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | mean x: 1753459003.5
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | mean y: 2370929.342857143
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | -- intersect: -252779818266.89243
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | intersect: -252779818266.89243
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | chi2: 1.828618350908635
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | -- intersect: -252779818266.89243
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | current memory leak: 144.16 B/s (using 70 data points, chi2=1.83)
[2025-07-26 01:36:45] 2025-07-25 16:36:12,921 | INFO     | could have reported an average CPU frequency of 3739 MHz (6 samples)
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | ..............................
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | . Timing measurements:
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | . get job = 0 s
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | . initial setup = 4 s
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | . payload setup = 3 s
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | . stage-in = 0 s
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | . payload execution = 4658 s
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | . stage-out = 0 s
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | . log creation = 0 s
[2025-07-26 01:36:45] 2025-07-25 16:36:12,922 | INFO     | ..............................
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | 
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | job summary report
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | --------------------------------------------------
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | PanDA job id: 6744952950
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | task id: 45743349
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | errors: (none)
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | pilot state: finished 
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | transexitcode: 0
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | exeerrorcode: 0
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | exeerrordiag: 
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | exitcode: 0
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | exitmsg: OK
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | cpuconsumptiontime: 22713 s
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | nevents: 400
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | neventsw: 0
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | pid: 3603145
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | pgrp: 3603145
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | corecount: 6
[2025-07-26 01:36:45] 2025-07-25 16:36:12,959 | INFO     | event service: False
[2025-07-26 01:36:45] 2025-07-25 16:36:12,960 | INFO     | sizes: {0: 2397422, 3: 2397684, 11: 2397712, 4666: 2432954, 4785: 2433092}
[2025-07-26 01:36:45] 2025-07-25 16:36:12,960 | INFO     | --------------------------------------------------
[2025-07-26 01:36:45] 2025-07-25 16:36:12,960 | INFO     | 
[2025-07-26 01:36:45] 2025-07-25 16:36:12,960 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-07-26 01:36:45] 2025-07-25 16:36:12,969 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,969 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,969 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,969 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,969 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,969 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | job 6744952950 has completed (purged errors)
[2025-07-26 01:36:45] 2025-07-25 16:36:12,970 | INFO     | overall cleanup function is called
[2025-07-26 01:36:45] 2025-07-25 16:36:13,976 | INFO     | --- collectZombieJob: --- 10, [3603145]
[2025-07-26 01:36:45] 2025-07-25 16:36:13,976 | INFO     | zombie collector waiting for pid 3603145
[2025-07-26 01:36:45] 2025-07-25 16:36:13,976 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 01:36:45] 2025-07-25 16:36:13,976 | INFO     | collected zombie processes
[2025-07-26 01:36:45] 2025-07-25 16:36:13,976 | INFO     | will attempt to kill all subprocesses of pid=3603145
[2025-07-26 01:36:45] 2025-07-25 16:36:14,025 | INFO     | process IDs to be killed: [3603145] (in reverse order)
[2025-07-26 01:36:45] 2025-07-25 16:36:14,045 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 01:36:45] 2025-07-25 16:36:14,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 01:36:45] 2025-07-25 16:36:14,047 | INFO     | did not find any defunct processes belonging to 3603145
[2025-07-26 01:36:45] 2025-07-25 16:36:14,054 | INFO     | did not find any defunct processes belonging to 3603145
[2025-07-26 01:36:45] 2025-07-25 16:36:14,054 | INFO     | ready for new job
[2025-07-26 01:36:45] 2025-07-25 16:36:14,054 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 01:36:45] 2025-07-25 16:36:14,055 | INFO     | ***************************************
[2025-07-26 01:36:45] 2025-07-25 16:36:14,055 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 01:36:45] 2025-07-25 16:36:14,055 | INFO     | ***************************************
[2025-07-26 01:36:45] 2025-07-25 16:36:14,055 | INFO     | 
[2025-07-26 01:36:45] 2025-07-25 16:36:14,055 | INFO     | architecture information:
[2025-07-26 01:36:45] 2025-07-25 16:36:14,056 | INFO     | executing command: cat /etc/os-release
[2025-07-26 01:36:45] 2025-07-25 16:36:14,061 | INFO     | cat /etc/os-release:
[2025-07-26 01:36:45] NAME="CentOS Linux"
[2025-07-26 01:36:45] VERSION="7 (Core)"
[2025-07-26 01:36:45] ID="centos"
[2025-07-26 01:36:45] ID_LIKE="rhel fedora"
[2025-07-26 01:36:45] VERSION_ID="7"
[2025-07-26 01:36:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 01:36:45] ANSI_COLOR="0;31"
[2025-07-26 01:36:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 01:36:45] HOME_URL="https://www.centos.org/"
[2025-07-26 01:36:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 01:36:45] 
[2025-07-26 01:36:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 01:36:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 01:36:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 01:36:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 01:36:45] 
[2025-07-26 01:36:45] 2025-07-25 16:36:14,062 | INFO     | ***************************************
[2025-07-26 01:36:45] 2025-07-25 16:36:14,564 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-07-26 01:36:45] 2025-07-25 16:36:14,571 | INFO     | sufficient remaining disk space (272612982784 B)
[2025-07-26 01:36:45] 2025-07-25 16:36:14,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 01:36:45] 2025-07-25 16:36:14,571 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 01:36:45] 2025-07-25 16:36:14,571 | INFO     | update_server=False
[2025-07-26 01:36:45] 2025-07-25 16:36:14,571 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 01:36:45] 2025-07-25 16:36:14,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:36:45] 2025-07-25 16:36:14,799 | INFO     | all job control threads have been joined
[2025-07-26 01:36:45] 2025-07-25 16:36:15,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 01:36:45] 2025-07-25 16:36:15,270 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:36:45] 2025-07-25 16:36:15,270 | INFO     | aborting loop
[2025-07-26 01:36:45] 2025-07-25 16:36:15,323 | INFO     | all data control threads have been joined
[2025-07-26 01:36:45] 2025-07-25 16:36:15,576 | INFO     | [job] retrieve thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:15,576 | INFO     | [job] queue monitor thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:15,586 | INFO     | [payload] failed_post thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:15,656 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:15,804 | INFO     | [job] control thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:15,853 | INFO     | all payload control threads have been joined
[2025-07-26 01:36:45] 2025-07-25 16:36:16,191 | INFO     | [job] validate thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:16,275 | INFO     | [job] job monitor thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:16,327 | INFO     | [data] control thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:16,477 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:16,520 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:16,675 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:16,705 | INFO     | [payload] validate_post thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:16,792 | INFO     | [data] copytool_in thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:16,857 | INFO     | [payload] control thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:17,254 | INFO     | [data] copytool_out thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:17,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 01:36:45] 2025-07-25 16:36:21,766 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 01:36:45] 2025-07-25 16:36:23,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827118790464)>', '<ExcThread(monitor, started 139826334521088)>']
[2025-07-26 01:36:45] 2025-07-25 16:36:28,658 | INFO     | all workflow threads have been joined
[2025-07-26 01:36:45] 2025-07-25 16:36:28,658 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 01:36:45] 2025-07-25 16:36:28,658 | INFO     | traces error code: 0
[2025-07-26 01:36:45] 2025-07-25 16:36:28,658 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 01:36:45] 2025-07-25 16:36:45,276 | INFO     | PID=3596601 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 01:36:45] 2025-07-25 16:36:45,280 | INFO     | .. there are 3 such processes running
[2025-07-26 01:36:45] 2025-07-25 16:36:45,280 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 01:36:45] 2025-07-25 16:36:45,280 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 01:36:45] 2025-07-25 16:36:45,280 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 01:36:45] 2025-07-25 16:36:45,280 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 01:36:45] 2025-07-25 16:36:45,281 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 01:36:45] 2025-07-25 16:36:45,281 | INFO     | [monitor] control thread has ended
[2025-07-26 01:36:45] 2025-07-25 16:36:45,361 [wrapper] ==== pilot stdout END ====
[2025-07-26 01:36:45] 2025-07-25 16:36:45,363 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 01:36:45] 2025-07-25 16:36:45,365 [wrapper] pilotpid: 3596601
[2025-07-26 01:36:45] 2025-07-25 16:36:45,367 [wrapper] Pilot exit status: 0
[2025-07-26 01:36:45] 2025-07-25 16:36:45,374 [wrapper] pandaids: 6744952950
[2025-07-26 01:36:45] 2025-07-25 16:36:45,394 [wrapper] cleanup supervisor_pilot 3661591 3596602
[2025-07-26 01:36:45] 2025-07-25 16:36:45,396 [wrapper] Test setup, not cleaning
[2025-07-26 01:36:45] 2025-07-25 16:36:45,398 [wrapper] apfmon messages muted
[2025-07-26 01:36:45] 2025-07-25 16:36:45,400 [wrapper] ==== wrapper stdout END ====
[2025-07-26 01:36:45] 2025-07-25 16:36:45,402 [wrapper] ==== wrapper stderr END ====
[2025-07-26 01:36:45]  *** Error codes and diagnostics ***
[2025-07-26 01:36:45]     "exeErrorCode": 0,
[2025-07-26 01:36:45]     "exeErrorDiag": "",
[2025-07-26 01:36:45]     "pilotErrorCode": 0,
[2025-07-26 01:36:45]     "pilotErrorDiag": "",
[2025-07-26 01:36:45]  *** Listing of results directory ***
[2025-07-26 01:36:45] total 345360
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc    530466 Jul 25 14:31 pilot3.tar.gz
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc      5112 Jul 25 14:41 queuedata.json
[2025-07-26 01:36:45] -rwx------. 1 boinc boinc     36292 Jul 25 14:42 runpilot2-wrapper.sh
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc       100 Jul 26 00:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 01:36:45] -rwxr-xr-x. 1 boinc boinc      7986 Jul 26 00:16 run_atlas
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc       105 Jul 26 00:16 job.xml
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc      9508 Jul 26 00:16 init_data.xml
[2025-07-26 01:36:45] -rw-r--r--. 2 boinc boinc 141547650 Jul 26 00:16 EVNT.45743347._000942.pool.root.1
[2025-07-26 01:36:45] -rw-r--r--. 2 boinc boinc     15095 Jul 26 00:16 start_atlas.sh
[2025-07-26 01:36:45] drwxrwx--x. 2 boinc boinc        68 Jul 26 00:16 shared
[2025-07-26 01:36:45] -rw-r--r--. 2 boinc boinc    542897 Jul 26 00:16 input.tar.gz
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc         0 Jul 26 00:16 boinc_lockfile
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc      2561 Jul 26 00:16 pandaJob.out
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc    979325 Jul 26 00:16 agis_schedconf.cvmfs.json
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc   1593052 Jul 26 00:16 agis_ddmendpoints.agis.ALL.json
[2025-07-26 01:36:45] drwx------. 4 boinc boinc      4096 Jul 26 00:16 pilot3
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc 206751942 Jul 26 01:33 HITS.45743349._016725.pool.root.1
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc      1017 Jul 26 01:34 memory_monitor_summary.json
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc    265959 Jul 26 01:34 log.45743349._016725.job.log.tgz.1
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc       529 Jul 26 01:34 boinc_task_state.xml
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc        95 Jul 26 01:36 pilot_heartbeat.json
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc      7764 Jul 26 01:36 heartbeat.json
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc      8192 Jul 26 01:36 boinc_mmap_file
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc        27 Jul 26 01:36 wrapper_checkpoint.txt
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc       892 Jul 26 01:36 pilotlog.txt
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc    475323 Jul 26 01:36 log.45743349._016725.job.log.1
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc       357 Jul 26 01:36 output.list
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc       620 Jul 26 01:36 runtime_log
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc    757760 Jul 26 01:36 result.tar.gz
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc       641 Jul 26 01:36 WcZMDmSNQz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmOWyKDmT9yXMm.diag
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc      8618 Jul 26 01:36 runtime_log.err
[2025-07-26 01:36:45] -rw-r--r--. 1 boinc boinc     22111 Jul 26 01:36 stderr.txt
[2025-07-26 01:36:45] HITS file was successfully produced:
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc 206751942 Jul 26 01:33 shared/HITS.pool.root.1
[2025-07-26 01:36:45]  *** Contents of shared directory: ***
[2025-07-26 01:36:45] total 341432
[2025-07-26 01:36:45] -rw-r--r--. 2 boinc boinc 141547650 Jul 26 00:16 ATLAS.root_0
[2025-07-26 01:36:45] -rw-r--r--. 2 boinc boinc     15095 Jul 26 00:16 start_atlas.sh
[2025-07-26 01:36:45] -rw-r--r--. 2 boinc boinc    542897 Jul 26 00:16 input.tar.gz
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc 206751942 Jul 26 01:33 HITS.pool.root.1
[2025-07-26 01:36:45] -rw-------. 1 boinc boinc    757760 Jul 26 01:36 result.tar.gz
01:36:47 (3592897): run_atlas exited; CPU time 22743.174931
01:36:47 (3592897): called boinc_finish(0)

</stderr_txt>
]]>

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