Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:07:39 (665212): wrapper (7.7.26015): starting
08:07:39 (665212): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 08:07:39] Arguments: --nthreads 8
[2025-07-25 08:07:39] Threads: 8
[2025-07-25 08:07:39] Checking for CVMFS
[2025-07-25 08:07:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 08:07:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 08:07:39] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 08:07:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 08:07:39] 2.13.1.0 3153527 5471 122992 148740 2 188 21551433 40960000 9531 16776704 0 66618677 99.998 202561 57973 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 08:07:39] CVMFS is ok
[2025-07-25 08:07:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 08:07:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 08:07:39] Further information can be found at the LHC@home message board.
[2025-07-25 08:07:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 08:07:39] Checking for apptainer binary...
[2025-07-25 08:07:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 08:07:39] Running /usr/bin/apptainer --version
[2025-07-25 08:07:39] apptainer version 1.4.1-1.el9
[2025-07-25 08:07:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 08:07:39] c-208-37.aglt2.org
[2025-07-25 08:07:39] apptainer works
[2025-07-25 08:07:39] Set ATHENA_PROC_NUMBER=8
[2025-07-25 08:07:39] Set ATHENA_CORE_NUMBER=8
[2025-07-25 08:07:39] Starting ATLAS job with PandaID=6744952972
[2025-07-25 08:07:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 09:07:06]  *** The last 200 lines of the pilot log: ***
[2025-07-25 09:07:06]  lfn=log.45743349._016747.job.log.tgz.1
[2025-07-25 09:07:06]  mtime=0
[2025-07-25 09:07:06]  protocol_id=None
[2025-07-25 09:07:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-25 09:07:06]  replicas=None
[2025-07-25 09:07:06]  scope=mc23_13p6TeV
[2025-07-25 09:07:06]  status=None
[2025-07-25 09:07:06]  status_code=0
[2025-07-25 09:07:06]  storage_token=
[2025-07-25 09:07:06]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6744952972/log.45743349._016747.job.log.tgz.1
[2025-07-25 09:07:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/65/3b/log.45743349._016747.job.log.tgz.1
[2025-07-25 09:07:06]  workdir=None
[2025-07-25 09:07:06] ]
[2025-07-25 09:07:06] 2025-07-25 13:05:22,626 | INFO     | transferring file log.45743349._016747.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6744952972/log.45743349._016747.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 09:07:06] 2025-07-25 13:05:22,626 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6744952972/log.45743349._016747.job.log.tgz.1 /tmp/boinchome/slots/5/log.45743349._016747.job
[2025-07-25 09:07:06] 2025-07-25 13:05:22,640 | INFO     | adding to output.list: log.45743349._016747.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/65/3b/log.45743349._016747.job.log.tg
[2025-07-25 09:07:06] 2025-07-25 13:05:22,641 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 09:07:06] 2025-07-25 13:05:22,641 | INFO     | summary of transferred files:
[2025-07-25 09:07:06] 2025-07-25 13:05:22,641 | INFO     |  -- lfn=log.45743349._016747.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 09:07:06] 2025-07-25 13:05:22,641 | INFO     | stage-out finished correctly
[2025-07-25 09:07:06] 2025-07-25 13:05:25,683 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 09:07:06] 2025-07-25 13:05:25,737 | INFO     | job 6744952972 has state=finished
[2025-07-25 09:07:06] 2025-07-25 13:05:25,738 | INFO     | preparing for final server update for job 6744952972 in state='finished'
[2025-07-25 09:07:06] 2025-07-25 13:05:25,738 | INFO     | this job has now completed (state=finished)
[2025-07-25 09:07:06] 2025-07-25 13:05:25,738 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 09:07:06] 2025-07-25 13:05:25,738 | INFO     | log transfer has been attempted: DONE
[2025-07-25 09:07:06] 2025-07-25 13:05:25,738 | INFO     | job 6744952972 has finished - writing final server update
[2025-07-25 09:07:06] 2025-07-25 13:05:25,738 | INFO     | total number of processed events: 400 (read)
[2025-07-25 09:07:06] 2025-07-25 13:05:25,739 | INFO     | executing command: lscpu
[2025-07-25 09:07:06] 2025-07-25 13:05:25,795 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 09:07:06] 2025-07-25 13:05:28,239 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 09:07:06] 2025-07-25 13:05:28,245 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3606.3098437500003
[2025-07-25 09:07:06] 2025-07-25 13:05:28,256 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6744952972/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 09:07:06] 2025-07-25 13:05:28,257 | INFO     | extracted standard info from prmon json
[2025-07-25 09:07:06] 2025-07-25 13:05:28,257 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 09:07:06] 2025-07-25 13:05:28,257 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 09:07:06] 2025-07-25 13:05:28,257 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 09:07:06] 2025-07-25 13:05:28,257 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | fitting pss+swap vs Time
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | sum of square deviations: 38744912.5
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | sum of deviations: 518640056.0
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | mean x: 1753447086.5
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | mean y: 2517385.8
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | -- intersect: -23469155059.850685
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | intersect: -23469155059.850685
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | chi2: 8.101302588618915e-05
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | -- intersect: -23469155059.850685
[2025-07-25 09:07:06] 2025-07-25 13:05:28,258 | INFO     | current memory leak: 13.39 B/s (using 50 data points, chi2=0.00)
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | could have reported an average CPU frequency of 3673 MHz (5 samples)
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | ..............................
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | . Timing measurements:
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | . get job = 0 s
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | . initial setup = 2 s
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | . payload setup = 3 s
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | . stage-in = 0 s
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | . payload execution = 3434 s
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | . stage-out = 0 s
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | . log creation = 0 s
[2025-07-25 09:07:06] 2025-07-25 13:05:28,259 | INFO     | ..............................
[2025-07-25 09:07:06] 2025-07-25 13:05:28,292 | INFO     | 
[2025-07-25 09:07:06] 2025-07-25 13:05:28,292 | INFO     | job summary report
[2025-07-25 09:07:06] 2025-07-25 13:05:28,292 | INFO     | --------------------------------------------------
[2025-07-25 09:07:06] 2025-07-25 13:05:28,292 | INFO     | PanDA job id: 6744952972
[2025-07-25 09:07:06] 2025-07-25 13:05:28,292 | INFO     | task id: 45743349
[2025-07-25 09:07:06] 2025-07-25 13:05:28,292 | INFO     | errors: (none)
[2025-07-25 09:07:06] 2025-07-25 13:05:28,292 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 09:07:06] 2025-07-25 13:05:28,292 | INFO     | pilot state: finished 
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | transexitcode: 0
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | exeerrorcode: 0
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | exeerrordiag: 
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | exitcode: 0
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | exitmsg: OK
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | cpuconsumptiontime: 25401 s
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | nevents: 400
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | neventsw: 0
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | pid: 700045
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | pgrp: 700045
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | corecount: 8
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | event service: False
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | sizes: {0: 2397302, 1: 2397501, 3: 2397763, 11: 2397791, 3442: 2423549, 3443: 2432547, 3446: 2432731, 3448: 2432957}
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | --------------------------------------------------
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | 
[2025-07-25 09:07:06] 2025-07-25 13:05:28,293 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-25 09:07:06] 2025-07-25 13:05:28,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 09:07:06] 2025-07-25 13:05:28,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 09:07:06] 2025-07-25 13:05:28,313 | INFO     | job 6744952972 has completed (purged errors)
[2025-07-25 09:07:06] 2025-07-25 13:05:28,313 | INFO     | overall cleanup function is called
[2025-07-25 09:07:06] 2025-07-25 13:05:28,609 | INFO     | PID=677360 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 09:07:06] 2025-07-25 13:05:28,609 | INFO     | .. there are 13 such processes running
[2025-07-25 09:07:06] 2025-07-25 13:05:28,837 | WARNING  | process 700045 can no longer be monitored (due to stat problems) - aborting
[2025-07-25 09:07:06] 2025-07-25 13:05:29,074 | INFO     | using path: /tmp/boinchome/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 09:07:06] 2025-07-25 13:05:29,321 | INFO     | --- collectZombieJob: --- 10, [700045]
[2025-07-25 09:07:06] 2025-07-25 13:05:29,321 | INFO     | zombie collector waiting for pid 700045
[2025-07-25 09:07:06] 2025-07-25 13:05:29,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 09:07:06] 2025-07-25 13:05:29,322 | INFO     | collected zombie processes
[2025-07-25 09:07:06] 2025-07-25 13:05:29,322 | INFO     | will attempt to kill all subprocesses of pid=700045
[2025-07-25 09:07:06] 2025-07-25 13:05:29,600 | INFO     | number of running child processes to parent process 700045: 1
[2025-07-25 09:07:06] 2025-07-25 13:05:29,600 | INFO     | maximum number of monitored processes: 6
[2025-07-25 09:07:06] 2025-07-25 13:05:29,600 | INFO     | aborting job monitoring since job object (job id=6744952972) has expired
[2025-07-25 09:07:06] 2025-07-25 13:05:29,739 | INFO     | process IDs to be killed: [700045] (in reverse order)
[2025-07-25 09:07:06] 2025-07-25 13:05:29,816 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 09:07:06] 2025-07-25 13:05:29,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 09:07:06] 2025-07-25 13:05:29,826 | INFO     | did not find any defunct processes belonging to 700045
[2025-07-25 09:07:06] 2025-07-25 13:05:29,833 | INFO     | did not find any defunct processes belonging to 700045
[2025-07-25 09:07:06] 2025-07-25 13:05:29,833 | INFO     | ready for new job
[2025-07-25 09:07:06] 2025-07-25 13:05:29,833 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 09:07:06] 2025-07-25 13:05:29,834 | INFO     | ***************************************
[2025-07-25 09:07:06] 2025-07-25 13:05:29,835 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 09:07:06] 2025-07-25 13:05:29,835 | INFO     | ***************************************
[2025-07-25 09:07:06] 2025-07-25 13:05:29,835 | INFO     | 
[2025-07-25 09:07:06] 2025-07-25 13:05:29,838 | INFO     | architecture information:
[2025-07-25 09:07:06] 2025-07-25 13:05:29,838 | INFO     | executing command: cat /etc/os-release
[2025-07-25 09:07:06] 2025-07-25 13:05:29,846 | INFO     | cat /etc/os-release:
[2025-07-25 09:07:06] NAME="CentOS Linux"
[2025-07-25 09:07:06] VERSION="7 (Core)"
[2025-07-25 09:07:06] ID="centos"
[2025-07-25 09:07:06] ID_LIKE="rhel fedora"
[2025-07-25 09:07:06] VERSION_ID="7"
[2025-07-25 09:07:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 09:07:06] ANSI_COLOR="0;31"
[2025-07-25 09:07:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 09:07:06] HOME_URL="https://www.centos.org/"
[2025-07-25 09:07:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 09:07:06] 
[2025-07-25 09:07:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 09:07:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 09:07:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 09:07:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 09:07:06] 
[2025-07-25 09:07:06] 2025-07-25 13:05:29,846 | INFO     | ***************************************
[2025-07-25 09:07:06] 2025-07-25 13:05:30,349 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-25 09:07:06] 2025-07-25 13:05:30,365 | INFO     | sufficient remaining disk space (166034669568 B)
[2025-07-25 09:07:06] 2025-07-25 13:05:30,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 09:07:06] 2025-07-25 13:05:30,365 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 09:07:06] 2025-07-25 13:05:30,365 | INFO     | update_server=False
[2025-07-25 09:07:06] 2025-07-25 13:05:30,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 09:07:06] 2025-07-25 13:05:30,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 09:07:06] 2025-07-25 13:05:30,366 | INFO     | will abort loop
[2025-07-25 09:07:06] 2025-07-25 13:05:30,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 09:07:06] 2025-07-25 13:05:31,015 | INFO     | all data control threads have been joined
[2025-07-25 09:07:06] 2025-07-25 13:05:31,036 | INFO     | all payload control threads have been joined
[2025-07-25 09:07:06] 2025-07-25 13:05:31,371 | INFO     | [job] retrieve thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:31,371 | INFO     | [job] job monitor thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:31,492 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:31,716 | INFO     | [payload] failed_post thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:31,743 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 09:07:06] 2025-07-25 13:05:31,749 | INFO     | [data] copytool_in thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:31,788 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:31,842 | INFO     | all job control threads have been joined
[2025-07-25 09:07:06] 2025-07-25 13:05:31,885 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:31,922 | INFO     | [job] validate thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:32,020 | INFO     | [data] control thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:32,041 | INFO     | [payload] control thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:32,148 | INFO     | [payload] validate_post thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:32,412 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:32,716 | INFO     | [data] copytool_out thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:32,847 | INFO     | [job] control thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:33,302 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 09:07:06] 2025-07-25 13:05:34,307 | INFO     | [job] queue monitor thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:35,749 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 09:07:06] 2025-07-25 13:05:36,341 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140358649497408)>', '<ExcThread(monitor, started 140358155482880)>']
[2025-07-25 09:07:06] 2025-07-25 13:05:41,366 | INFO     | all workflow threads have been joined
[2025-07-25 09:07:06] 2025-07-25 13:05:41,367 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 09:07:06] 2025-07-25 13:05:41,367 | INFO     | traces error code: 0
[2025-07-25 09:07:06] 2025-07-25 13:05:41,367 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 09:07:06] 2025-07-25 13:06:00,940 | INFO     | PID=677360 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 09:07:06] 2025-07-25 13:06:00,940 | INFO     | .. there are 13 such processes running
[2025-07-25 09:07:06] 2025-07-25 13:06:00,941 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 09:07:06] 2025-07-25 13:06:00,941 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 09:07:06] 2025-07-25 13:06:00,941 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 09:07:06] 2025-07-25 13:06:00,941 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 09:07:06] 2025-07-25 13:06:00,941 | INFO     | [monitor] control thread has ended
[2025-07-25 09:07:06] 2025-07-25 13:06:01,010 [wrapper] ==== pilot stdout END ====
[2025-07-25 09:07:06] 2025-07-25 13:06:01,012 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 09:07:06] 2025-07-25 13:06:01,014 [wrapper] pilotpid: 677360
[2025-07-25 09:07:06] 2025-07-25 13:06:01,015 [wrapper] Pilot exit status: 0
[2025-07-25 09:07:06] 2025-07-25 13:06:01,022 [wrapper] pandaids: 6744952972
[2025-07-25 09:07:06] 2025-07-25 13:06:01,076 [wrapper] cleanup supervisor_pilot  960417 677361
[2025-07-25 09:07:06] 2025-07-25 13:06:01,078 [wrapper] Test setup, not cleaning
[2025-07-25 09:07:06] 2025-07-25 13:06:01,079 [wrapper] apfmon messages muted
[2025-07-25 09:07:06] 2025-07-25 13:06:01,081 [wrapper] ==== wrapper stdout END ====
[2025-07-25 09:07:06] 2025-07-25 13:06:01,083 [wrapper] ==== wrapper stderr END ====
[2025-07-25 09:07:06]  *** Error codes and diagnostics ***
[2025-07-25 09:07:06]     "exeErrorCode": 0,
[2025-07-25 09:07:06]     "exeErrorDiag": "",
[2025-07-25 09:07:06]     "pilotErrorCode": 0,
[2025-07-25 09:07:06]     "pilotErrorDiag": "",
[2025-07-25 09:07:06]  *** Listing of results directory ***
[2025-07-25 09:07:06] total 353460
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 01:31 pilot3.tar.gz
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 01:41 queuedata.json
[2025-07-25 09:07:06] -rwx------. 1 boincer umatlas     36292 Jul 25 01:42 runpilot2-wrapper.sh
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas       100 Jul 25 08:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 09:07:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 08:07 run_atlas
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas       105 Jul 25 08:07 job.xml
[2025-07-25 09:07:06] -rw-r--r--. 2 boincer umatlas 148920290 Jul 25 08:07 EVNT.45743347._000943.pool.root.1
[2025-07-25 09:07:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 08:07 start_atlas.sh
[2025-07-25 09:07:06] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 08:07 shared
[2025-07-25 09:07:06] -rw-r--r--. 2 boincer umatlas    542896 Jul 25 08:07 input.tar.gz
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas         0 Jul 25 08:07 boinc_lockfile
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 08:07 pandaJob.out
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas    979317 Jul 25 08:07 agis_schedconf.cvmfs.json
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas   1593052 Jul 25 08:07 agis_ddmendpoints.agis.ALL.json
[2025-07-25 09:07:06] drwx------. 4 boincer umatlas      4096 Jul 25 08:07 pilot3
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas      7174 Jul 25 09:01 init_data.xml
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas 207851729 Jul 25 09:04 HITS.45743349._016747.pool.root.1
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas       529 Jul 25 09:05 boinc_task_state.xml
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas      1029 Jul 25 09:05 memory_monitor_summary.json
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas    294509 Jul 25 09:05 log.45743349._016747.job.log.tgz.1
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas      7764 Jul 25 09:05 heartbeat.json
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas        95 Jul 25 09:06 pilot_heartbeat.json
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas       822 Jul 25 09:06 pilotlog.txt
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas    350481 Jul 25 09:06 log.45743349._016747.job.log.1
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas       357 Jul 25 09:06 output.list
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas       620 Jul 25 09:06 runtime_log
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas    665600 Jul 25 09:06 result.tar.gz
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas      8660 Jul 25 09:06 runtime_log.err
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas       651 Jul 25 09:06 BzJKDmONQz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmEWyKDmsxhY3m.diag
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas        27 Jul 25 09:07 wrapper_checkpoint.txt
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 09:07 boinc_mmap_file
[2025-07-25 09:07:06] -rw-r--r--. 1 boincer umatlas     21732 Jul 25 09:07 stderr.txt
[2025-07-25 09:07:06] HITS file was successfully produced:
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas 207851729 Jul 25 09:04 shared/HITS.pool.root.1
[2025-07-25 09:07:06]  *** Contents of shared directory: ***
[2025-07-25 09:07:06] total 349624
[2025-07-25 09:07:06] -rw-r--r--. 2 boincer umatlas 148920290 Jul 25 08:07 ATLAS.root_0
[2025-07-25 09:07:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 08:07 start_atlas.sh
[2025-07-25 09:07:06] -rw-r--r--. 2 boincer umatlas    542896 Jul 25 08:07 input.tar.gz
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas 207851729 Jul 25 09:04 HITS.pool.root.1
[2025-07-25 09:07:06] -rw-------. 1 boincer umatlas    665600 Jul 25 09:06 result.tar.gz
09:07:08 (665212): run_atlas exited; CPU time 25480.090557
09:07:08 (665212): called boinc_finish(0)

</stderr_txt>
]]>

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