Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:01:41 (3187027): wrapper (7.7.26015): starting
08:01:41 (3187027): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 08:01:41] Arguments: --nthreads 8
[2025-07-25 08:01:41] Threads: 8
[2025-07-25 08:01:41] Checking for CVMFS
[2025-07-25 08:01:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 08:01:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 08:01:42] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 08:01:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 08:01:42] 2.13.0.0 654572 15474 389300 148740 0 550 29780419 32935936 21945 16776704 0 79585202 99.598 126069839 20140 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 08:01:42] CVMFS is ok
[2025-07-25 08:01:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 08:01:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 08:01:42] Further information can be found at the LHC@home message board.
[2025-07-25 08:01:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 08:01:42] Checking for apptainer binary...
[2025-07-25 08:01:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 08:01:42] Running /usr/bin/apptainer --version
[2025-07-25 08:01:42] apptainer version 1.4.1-1.el9
[2025-07-25 08:01:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 08:01:43] c7-3-28.aglt2.org
[2025-07-25 08:01:43] apptainer works
[2025-07-25 08:01:43] Set ATHENA_PROC_NUMBER=8
[2025-07-25 08:01:43] Set ATHENA_CORE_NUMBER=8
[2025-07-25 08:01:43] Starting ATLAS job with PandaID=6744952847
[2025-07-25 08:01:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 09:36:41]  *** The last 200 lines of the pilot log: ***
[2025-07-25 09:36:41]  protocol_id=None
[2025-07-25 09:36:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-25 09:36:41]  replicas=None
[2025-07-25 09:36:41]  scope=mc23_13p6TeV
[2025-07-25 09:36:41]  status=None
[2025-07-25 09:36:41]  status_code=0
[2025-07-25 09:36:41]  storage_token=
[2025-07-25 09:36:41]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6744952847/log.45743349._016622.job.log.tgz.1
[2025-07-25 09:36:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/85/log.45743349._016622.job.log.tgz.1
[2025-07-25 09:36:41]  workdir=None
[2025-07-25 09:36:41] ]
[2025-07-25 09:36:41] 2025-07-25 13:35:59,553 | INFO     | transferring file log.45743349._016622.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6744952847/log.45743349._016622.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 09:36:41] 2025-07-25 13:35:59,553 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6744952847/log.45743349._016622.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._016622.job
[2025-07-25 09:36:41] 2025-07-25 13:35:59,590 | INFO     | adding to output.list: log.45743349._016622.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/85/log.45743349._016622.job.log.tg
[2025-07-25 09:36:41] 2025-07-25 13:35:59,591 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 09:36:41] 2025-07-25 13:35:59,591 | INFO     | summary of transferred files:
[2025-07-25 09:36:41] 2025-07-25 13:35:59,591 | INFO     |  -- lfn=log.45743349._016622.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 09:36:41] 2025-07-25 13:35:59,591 | INFO     | stage-out finished correctly
[2025-07-25 09:36:41] 2025-07-25 13:36:00,656 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 09:36:41] 2025-07-25 13:36:00,730 | INFO     | job 6744952847 has state=finished
[2025-07-25 09:36:41] 2025-07-25 13:36:00,731 | INFO     | preparing for final server update for job 6744952847 in state='finished'
[2025-07-25 09:36:41] 2025-07-25 13:36:00,801 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-25 09:36:41] 2025-07-25 13:36:00,802 | INFO     | this job has now completed (state=finished)
[2025-07-25 09:36:41] 2025-07-25 13:36:00,802 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 09:36:41] 2025-07-25 13:36:00,802 | INFO     | log transfer has been attempted: DONE
[2025-07-25 09:36:41] 2025-07-25 13:36:00,802 | INFO     | job 6744952847 has finished - writing final server update
[2025-07-25 09:36:41] 2025-07-25 13:36:00,802 | INFO     | total number of processed events: 400 (read)
[2025-07-25 09:36:41] 2025-07-25 13:36:00,804 | INFO     | executing command: lscpu
[2025-07-25 09:36:41] 2025-07-25 13:36:00,872 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 09:36:41] 2025-07-25 13:36:01,224 | INFO     | monitor loop #384: job 0:6744952847 is in state 'finished'
[2025-07-25 09:36:41] 2025-07-25 13:36:01,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 09:36:41] 2025-07-25 13:36:03,727 | INFO     | monitor loop #385: job 0:6744952847 is in state 'finished'
[2025-07-25 09:36:41] 2025-07-25 13:36:03,727 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 09:36:41] 2025-07-25 13:36:06,231 | INFO     | monitor loop #386: job 0:6744952847 is in state 'finished'
[2025-07-25 09:36:41] 2025-07-25 13:36:06,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 09:36:41] 2025-07-25 13:36:08,459 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 09:36:41] 2025-07-25 13:36:08,464 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3054.7765833333337
[2025-07-25 09:36:41] 2025-07-25 13:36:08,476 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6744952847/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 09:36:41] 2025-07-25 13:36:08,477 | INFO     | extracted standard info from prmon json
[2025-07-25 09:36:41] 2025-07-25 13:36:08,477 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 09:36:41] 2025-07-25 13:36:08,477 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 09:36:41] 2025-07-25 13:36:08,477 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 09:36:41] 2025-07-25 13:36:08,477 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 09:36:41] 2025-07-25 13:36:08,479 | INFO     | fitting pss+swap vs Time
[2025-07-25 09:36:41] 2025-07-25 13:36:08,479 | INFO     | sum of square deviations: 190403570.0
[2025-07-25 09:36:41] 2025-07-25 13:36:08,479 | INFO     | sum of deviations: 1342010675.0000002
[2025-07-25 09:36:41] 2025-07-25 13:36:08,479 | INFO     | mean x: 1753447829.0
[2025-07-25 09:36:41] 2025-07-25 13:36:08,479 | INFO     | mean y: 2176566.694117647
[2025-07-25 09:36:41] 2025-07-25 13:36:08,479 | INFO     | -- intersect: -12356550239.6025
[2025-07-25 09:36:41] 2025-07-25 13:36:08,479 | INFO     | intersect: -12356550239.6025
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | chi2: 0.04223015360969686
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | -- intersect: -12356550239.6025
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | current memory leak: 7.05 B/s (using 85 data points, chi2=0.04)
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | could have reported an average CPU frequency of 3046 MHz (7 samples)
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | ..............................
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | . Timing measurements:
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | . get job = 0 s
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | . initial setup = 2 s
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | . payload setup = 12 s
[2025-07-25 09:36:41] 2025-07-25 13:36:08,480 | INFO     | . stage-in = 0 s
[2025-07-25 09:36:41] 2025-07-25 13:36:08,481 | INFO     | . payload execution = 5601 s
[2025-07-25 09:36:41] 2025-07-25 13:36:08,481 | INFO     | . stage-out = 0 s
[2025-07-25 09:36:41] 2025-07-25 13:36:08,481 | INFO     | . log creation = 0 s
[2025-07-25 09:36:41] 2025-07-25 13:36:08,481 | INFO     | ..............................
[2025-07-25 09:36:41] 2025-07-25 13:36:08,552 | INFO     | 
[2025-07-25 09:36:41] 2025-07-25 13:36:08,552 | INFO     | job summary report
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | --------------------------------------------------
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | PanDA job id: 6744952847
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | task id: 45743349
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | errors: (none)
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | pilot state: finished 
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | transexitcode: 0
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | exeerrorcode: 0
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | exeerrordiag: 
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | exitcode: 0
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | exitmsg: OK
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | cpuconsumptiontime: 34315 s
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | nevents: 400
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | neventsw: 0
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | pid: 3204900
[2025-07-25 09:36:41] 2025-07-25 13:36:08,553 | INFO     | pgrp: 3204900
[2025-07-25 09:36:41] 2025-07-25 13:36:08,554 | INFO     | corecount: 8
[2025-07-25 09:36:41] 2025-07-25 13:36:08,554 | INFO     | event service: False
[2025-07-25 09:36:41] 2025-07-25 13:36:08,554 | INFO     | sizes: {0: 2397302, 1: 2397501, 9: 2397763, 11: 2397791, 5617: 2424531, 5618: 2424530, 5619: 2433712, 5620: 2433768, 5627: 2433962}
[2025-07-25 09:36:41] 2025-07-25 13:36:08,554 | INFO     | --------------------------------------------------
[2025-07-25 09:36:41] 2025-07-25 13:36:08,554 | INFO     | 
[2025-07-25 09:36:41] 2025-07-25 13:36:08,554 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-25 09:36:41] 2025-07-25 13:36:08,575 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,575 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,576 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 09:36:41] 2025-07-25 13:36:08,577 | INFO     | job 6744952847 has completed (purged errors)
[2025-07-25 09:36:41] 2025-07-25 13:36:08,577 | INFO     | overall cleanup function is called
[2025-07-25 09:36:41] 2025-07-25 13:36:09,585 | INFO     | --- collectZombieJob: --- 10, [3204900]
[2025-07-25 09:36:41] 2025-07-25 13:36:09,585 | INFO     | zombie collector waiting for pid 3204900
[2025-07-25 09:36:41] 2025-07-25 13:36:09,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 09:36:41] 2025-07-25 13:36:09,585 | INFO     | collected zombie processes
[2025-07-25 09:36:41] 2025-07-25 13:36:09,585 | INFO     | will attempt to kill all subprocesses of pid=3204900
[2025-07-25 09:36:41] 2025-07-25 13:36:09,958 | INFO     | process IDs to be killed: [3204900] (in reverse order)
[2025-07-25 09:36:41] 2025-07-25 13:36:10,119 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 09:36:41] 2025-07-25 13:36:10,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 09:36:41] 2025-07-25 13:36:10,139 | INFO     | did not find any defunct processes belonging to 3204900
[2025-07-25 09:36:41] 2025-07-25 13:36:10,159 | INFO     | did not find any defunct processes belonging to 3204900
[2025-07-25 09:36:41] 2025-07-25 13:36:10,159 | INFO     | ready for new job
[2025-07-25 09:36:41] 2025-07-25 13:36:10,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 09:36:41] 2025-07-25 13:36:10,160 | INFO     | ***************************************
[2025-07-25 09:36:41] 2025-07-25 13:36:10,160 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 09:36:41] 2025-07-25 13:36:10,160 | INFO     | ***************************************
[2025-07-25 09:36:41] 2025-07-25 13:36:10,160 | INFO     | 
[2025-07-25 09:36:41] 2025-07-25 13:36:10,178 | INFO     | architecture information:
[2025-07-25 09:36:41] 2025-07-25 13:36:10,178 | INFO     | executing command: cat /etc/os-release
[2025-07-25 09:36:41] 2025-07-25 13:36:10,198 | INFO     | cat /etc/os-release:
[2025-07-25 09:36:41] NAME="CentOS Linux"
[2025-07-25 09:36:41] VERSION="7 (Core)"
[2025-07-25 09:36:41] ID="centos"
[2025-07-25 09:36:41] ID_LIKE="rhel fedora"
[2025-07-25 09:36:41] VERSION_ID="7"
[2025-07-25 09:36:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 09:36:41] ANSI_COLOR="0;31"
[2025-07-25 09:36:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 09:36:41] HOME_URL="https://www.centos.org/"
[2025-07-25 09:36:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 09:36:41] 
[2025-07-25 09:36:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 09:36:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 09:36:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 09:36:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 09:36:41] 
[2025-07-25 09:36:41] 2025-07-25 13:36:10,198 | INFO     | ***************************************
[2025-07-25 09:36:41] 2025-07-25 13:36:10,701 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-25 09:36:41] 2025-07-25 13:36:10,721 | INFO     | sufficient remaining disk space (75815190528 B)
[2025-07-25 09:36:41] 2025-07-25 13:36:10,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 09:36:41] 2025-07-25 13:36:10,721 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 09:36:41] 2025-07-25 13:36:10,721 | INFO     | update_server=False
[2025-07-25 09:36:41] 2025-07-25 13:36:10,721 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 09:36:41] 2025-07-25 13:36:10,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 09:36:41] 2025-07-25 13:36:10,721 | INFO     | aborting loop
[2025-07-25 09:36:41] 2025-07-25 13:36:10,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 09:36:41] 2025-07-25 13:36:10,768 | INFO     | all job control threads have been joined
[2025-07-25 09:36:41] 2025-07-25 13:36:11,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 09:36:41] 2025-07-25 13:36:11,362 | INFO     | all data control threads have been joined
[2025-07-25 09:36:41] 2025-07-25 13:36:11,427 | INFO     | all payload control threads have been joined
[2025-07-25 09:36:41] 2025-07-25 13:36:11,722 | INFO     | [job] retrieve thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:11,727 | INFO     | [job] job monitor thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:11,774 | INFO     | [job] control thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:12,367 | INFO     | [data] control thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:12,433 | INFO     | [payload] control thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:12,444 | INFO     | [job] validate thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:12,728 | INFO     | [data] copytool_out thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:12,781 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:12,808 | INFO     | [payload] validate_post thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:12,879 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:13,045 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:13,079 | INFO     | [data] copytool_in thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:13,180 | INFO     | [payload] failed_post thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:13,565 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 09:36:41] 2025-07-25 13:36:14,570 | INFO     | [job] queue monitor thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:15,255 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:21,699 | INFO     | job.realtimelogging is not enabled
[2025-07-25 09:36:41] 2025-07-25 13:36:22,705 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 09:36:41] 2025-07-25 13:36:23,373 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399138838336)>', '<ExcThread(monitor, started 140398496302848)>']
[2025-07-25 09:36:41] 2025-07-25 13:36:28,398 | INFO     | all workflow threads have been joined
[2025-07-25 09:36:41] 2025-07-25 13:36:28,398 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 09:36:41] 2025-07-25 13:36:28,398 | INFO     | traces error code: 0
[2025-07-25 09:36:41] 2025-07-25 13:36:28,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 09:36:41] 2025-07-25 13:36:41,156 | INFO     | PID=3193743 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 09:36:41] 2025-07-25 13:36:41,156 | INFO     | .. there are 28 such processes running
[2025-07-25 09:36:41] 2025-07-25 13:36:41,157 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 09:36:41] 2025-07-25 13:36:41,157 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 09:36:41] 2025-07-25 13:36:41,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 09:36:41] 2025-07-25 13:36:41,157 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 09:36:41] 2025-07-25 13:36:41,157 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 09:36:41] 2025-07-25 13:36:41,157 | INFO     | [monitor] control thread has ended
[2025-07-25 09:36:41] 2025-07-25 13:36:41,259 [wrapper] ==== pilot stdout END ====
[2025-07-25 09:36:41] 2025-07-25 13:36:41,263 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 09:36:41] 2025-07-25 13:36:41,265 [wrapper] pilotpid: 3193743
[2025-07-25 09:36:41] 2025-07-25 13:36:41,269 [wrapper] Pilot exit status: 0
[2025-07-25 09:36:41] 2025-07-25 13:36:41,284 [wrapper] pandaids: 6744952847
[2025-07-25 09:36:41] 2025-07-25 13:36:41,373 [wrapper] cleanup supervisor_pilot 3540358 3193744
[2025-07-25 09:36:41] 2025-07-25 13:36:41,376 [wrapper] Test setup, not cleaning
[2025-07-25 09:36:41] 2025-07-25 13:36:41,379 [wrapper] apfmon messages muted
[2025-07-25 09:36:41] 2025-07-25 13:36:41,382 [wrapper] ==== wrapper stdout END ====
[2025-07-25 09:36:41] 2025-07-25 13:36:41,385 [wrapper] ==== wrapper stderr END ====
[2025-07-25 09:36:41]  *** Error codes and diagnostics ***
[2025-07-25 09:36:41]     "exeErrorCode": 0,
[2025-07-25 09:36:41]     "exeErrorDiag": "",
[2025-07-25 09:36:41]     "pilotErrorCode": 0,
[2025-07-25 09:36:41]     "pilotErrorDiag": "",
[2025-07-25 09:36:41]  *** Listing of results directory ***
[2025-07-25 09:36:41] total 354520
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 01:16 pilot3.tar.gz
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 01:28 queuedata.json
[2025-07-25 09:36:41] -rwx------. 1 boincer umatlas     36292 Jul 25 01:29 runpilot2-wrapper.sh
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas       100 Jul 25 08:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 09:36:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 08:01 run_atlas
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas       105 Jul 25 08:01 job.xml
[2025-07-25 09:36:41] -rw-r--r--. 2 boincer umatlas 145645907 Jul 25 08:01 EVNT.45743347._000935.pool.root.1
[2025-07-25 09:36:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 08:01 start_atlas.sh
[2025-07-25 09:36:41] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 08:01 shared
[2025-07-25 09:36:41] -rw-r--r--. 2 boincer umatlas    542895 Jul 25 08:01 input.tar.gz
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas         0 Jul 25 08:01 boinc_lockfile
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 08:01 pandaJob.out
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas    979317 Jul 25 08:01 agis_schedconf.cvmfs.json
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas   1593052 Jul 25 08:01 agis_ddmendpoints.agis.ALL.json
[2025-07-25 09:36:41] drwx------. 4 boincer umatlas      4096 Jul 25 08:02 pilot3
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas      6933 Jul 25 09:27 init_data.xml
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas 211821146 Jul 25 09:35 HITS.45743349._016622.pool.root.1
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas       529 Jul 25 09:35 boinc_task_state.xml
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas      1034 Jul 25 09:35 memory_monitor_summary.json
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas    310466 Jul 25 09:35 log.45743349._016622.job.log.tgz.1
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas      7767 Jul 25 09:36 heartbeat.json
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 09:36 boinc_mmap_file
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas        27 Jul 25 09:36 wrapper_checkpoint.txt
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas       893 Jul 25 09:36 pilotlog.txt
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas        95 Jul 25 09:36 pilot_heartbeat.json
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas    528594 Jul 25 09:36 log.45743349._016622.job.log.1
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas       357 Jul 25 09:36 output.list
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas       620 Jul 25 09:36 runtime_log
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas    860160 Jul 25 09:36 result.tar.gz
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas      8655 Jul 25 09:36 runtime_log.err
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas       651 Jul 25 09:36 1H1NDmKBQz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfnOLDmeeefzn.diag
[2025-07-25 09:36:41] -rw-r--r--. 1 boincer umatlas     21804 Jul 25 09:36 stderr.txt
[2025-07-25 09:36:41] HITS file was successfully produced:
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas 211821146 Jul 25 09:35 shared/HITS.pool.root.1
[2025-07-25 09:36:41]  *** Contents of shared directory: ***
[2025-07-25 09:36:41] total 350492
[2025-07-25 09:36:41] -rw-r--r--. 2 boincer umatlas 145645907 Jul 25 08:01 ATLAS.root_0
[2025-07-25 09:36:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 08:01 start_atlas.sh
[2025-07-25 09:36:41] -rw-r--r--. 2 boincer umatlas    542895 Jul 25 08:01 input.tar.gz
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas 211821146 Jul 25 09:35 HITS.pool.root.1
[2025-07-25 09:36:41] -rw-------. 1 boincer umatlas    860160 Jul 25 09:36 result.tar.gz
09:36:42 (3187027): run_atlas exited; CPU time 34477.320587
09:36:42 (3187027): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN