Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:45:44 (746291): wrapper (7.7.26015): starting
04:45:44 (746291): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 04:45:44] Arguments: --nthreads 12
[2025-07-25 04:45:44] Threads: 12
[2025-07-25 04:45:44] Checking for CVMFS
[2025-07-25 04:45:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 04:45:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 04:45:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 04:45:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 04:45:45] 2.11.5.0 196232 34079 226012 148740 0 266 28049465 45568000 10316 130560 0 264780492 99.771 178040642 28053 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-25 04:45:45] CVMFS is ok
[2025-07-25 04:45:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 04:45:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 04:45:45] Further information can be found at the LHC@home message board.
[2025-07-25 04:45:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 04:45:45] Checking for apptainer binary...
[2025-07-25 04:45:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 04:45:45] Running /usr/bin/apptainer --version
[2025-07-25 04:45:45] apptainer version 1.4.1-1.el9
[2025-07-25 04:45:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 04:45:45] wns0092.triumf.lcg
[2025-07-25 04:45:45] apptainer works
[2025-07-25 04:45:45] Set ATHENA_PROC_NUMBER=12
[2025-07-25 04:45:45] Set ATHENA_CORE_NUMBER=12
[2025-07-25 04:45:45] Starting ATLAS job with PandaID=6744978167
[2025-07-25 04:45:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 04:49:09]  *** The last 200 lines of the pilot log: ***
[2025-07-25 04:49:09] 2025-07-25 11:48:36,659 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | WARNING  | found no stored workdir sizes
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | INFO     | will not add max space = 0 B to job metrics
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | WARNING  | wrong length of table data, x=[1753443982.0], y=[998.0] (must be same and length>=4)
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | INFO     | could have reported an average CPU frequency of 2736 MHz (4 samples)
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | INFO     | ..............................
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . Timing measurements:
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . get job = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . initial setup = 7 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . payload setup = 4 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . stage-in = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . payload execution = 14 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . stage-out = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . log creation = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | ..............................
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744978167/pilotlog.txt
[2025-07-25 04:49:09] 2025-07-25 11:48:36,673 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-25 04:49:09] - Log from pilotlog.txt -
[2025-07-25 04:49:09] 2025-07-25 11:48:36,659 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 04:49:09] 2025-07-25 11:48:36,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 04:49:09] 2025-07-25 11:48:36,659 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 04:49:09] 2025-07-25 11:48:36,659 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | WARNING  | found no stored workdir sizes
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | INFO     | will not add max space = 0 B to job metrics
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | WARNING  | wrong length of table data, x=[1753443982.0], y=[998.0] (must be same and length>=4)
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | INFO     | could have reported an average CPU frequency of 2736 MHz (4 samples)
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | INFO     | ..............................
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . Timing measurements:
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . get job = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . initial setup = 7 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . payload setup = 4 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . stage-in = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . payload execution = 14 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . stage-out = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . log creation = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | ..............................
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744978167/pilotlog.txt
[2025-07-25 04:49:09] 2025-07-25 11:48:36,673 | WARNING  | 
[2025-07-25 04:49:09] [begin log extracts]
[2025-07-25 04:49:09] - Log from pilotlog.txt -
[2025-07-25 04:49:09] 2025-07-25 11:48:36,659 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 04:49:09] 2025-07-25 11:48:36,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 04:49:09] 2025-07-25 11:48:36,659 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 04:49:09] 2025-07-25 11:48:36,659 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | WARNING  | found no stored workdir sizes
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | INFO     | will not add max space = 0 B to job metrics
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | WARNING  | wrong length of table data, x=[1753443982.0], y=[998.0] (must be same and length>=4)
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | INFO     | could have reported an average CPU frequency of 2736 MHz (4 samples)
[2025-07-25 04:49:09] 2025-07-25 11:48:36,660 | INFO     | ..............................
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . Timing measurements:
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . get job = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . initial setup = 7 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . payload setup = 4 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . stage-in = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . payload execution = 14 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . stage-out = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | . log creation = 0 s
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | ..............................
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 04:49:09] 2025-07-25 11:48:36,661 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744978167/pilotlog.txt
[2025-07-25 04:49:09] [end log extracts]
[2025-07-25 04:49:09] 2025-07-25 11:48:36,673 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-25 04:49:09] 2025-07-25 11:48:36,674 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-25 04:49:09] 2025-07-25 11:48:37,033 | INFO     | 
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | job summary report
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | --------------------------------------------------
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | PanDA job id: 6744978167
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | task id: 45743349
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-25 04:46:28,450 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | pilot state: failed 
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | transexitcode: 65
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | exeerrorcode: 65
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | exitcode: 65
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | cpuconsumptiontime: 15 s
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | nevents: 0
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | neventsw: 0
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | pid: 756174
[2025-07-25 04:49:09] 2025-07-25 11:48:37,034 | INFO     | pgrp: 756174
[2025-07-25 04:49:09] 2025-07-25 11:48:37,035 | INFO     | corecount: 12
[2025-07-25 04:49:09] 2025-07-25 11:48:37,035 | INFO     | event service: False
[2025-07-25 04:49:09] 2025-07-25 11:48:37,035 | INFO     | sizes: {0: 2397470, 1: 2397470, 4: 2397760, 11: 2397788, 23: 2425269, 24: 2425269, 144: 2425563}
[2025-07-25 04:49:09] 2025-07-25 11:48:37,035 | INFO     | --------------------------------------------------
[2025-07-25 04:49:09] 2025-07-25 11:48:37,035 | INFO     | 
[2025-07-25 04:49:09] 2025-07-25 11:48:37,035 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-25 04:49:09] 2025-07-25 11:48:37,048 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,050 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,050 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 04:49:09] 2025-07-25 11:48:37,050 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,050 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 04:49:09] 2025-07-25 11:48:37,050 | INFO     | job 6744978167 has completed (purged errors)
[2025-07-25 04:49:09] 2025-07-25 11:48:37,050 | INFO     | overall cleanup function is called
[2025-07-25 04:49:09] 2025-07-25 11:48:38,056 | INFO     | --- collectZombieJob: --- 10, [756174]
[2025-07-25 04:49:09] 2025-07-25 11:48:38,056 | INFO     | zombie collector waiting for pid 756174
[2025-07-25 04:49:09] 2025-07-25 11:48:38,056 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 04:49:09] 2025-07-25 11:48:38,056 | INFO     | collected zombie processes
[2025-07-25 04:49:09] 2025-07-25 11:48:38,056 | INFO     | will attempt to kill all subprocesses of pid=756174
[2025-07-25 04:49:09] 2025-07-25 11:48:38,189 | INFO     | process IDs to be killed: [756174] (in reverse order)
[2025-07-25 04:49:09] 2025-07-25 11:48:38,237 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 04:49:09] 2025-07-25 11:48:38,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 04:49:09] 2025-07-25 11:48:38,242 | INFO     | did not find any defunct processes belonging to 756174
[2025-07-25 04:49:09] 2025-07-25 11:48:38,247 | INFO     | did not find any defunct processes belonging to 756174
[2025-07-25 04:49:09] 2025-07-25 11:48:38,248 | INFO     | ready for new job
[2025-07-25 04:49:09] 2025-07-25 11:48:38,248 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 04:49:09] 2025-07-25 11:48:38,250 | INFO     | ***************************************
[2025-07-25 04:49:09] 2025-07-25 11:48:38,250 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 04:49:09] 2025-07-25 11:48:38,250 | INFO     | ***************************************
[2025-07-25 04:49:09] 2025-07-25 11:48:38,250 | INFO     | 
[2025-07-25 04:49:09] 2025-07-25 11:48:38,252 | INFO     | architecture information:
[2025-07-25 04:49:09] 2025-07-25 11:48:38,252 | INFO     | executing command: cat /etc/os-release
[2025-07-25 04:49:09] 2025-07-25 11:48:38,263 | INFO     | cat /etc/os-release:
[2025-07-25 04:49:09] NAME="CentOS Linux"
[2025-07-25 04:49:09] VERSION="7 (Core)"
[2025-07-25 04:49:09] ID="centos"
[2025-07-25 04:49:09] ID_LIKE="rhel fedora"
[2025-07-25 04:49:09] VERSION_ID="7"
[2025-07-25 04:49:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 04:49:09] ANSI_COLOR="0;31"
[2025-07-25 04:49:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 04:49:09] HOME_URL="https://www.centos.org/"
[2025-07-25 04:49:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 04:49:09] 
[2025-07-25 04:49:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 04:49:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 04:49:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 04:49:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 04:49:09] 
[2025-07-25 04:49:09] 2025-07-25 11:48:38,263 | INFO     | ***************************************
[2025-07-25 04:49:09] 2025-07-25 11:48:38,766 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-25 04:49:09] 2025-07-25 11:48:38,778 | INFO     | sufficient remaining disk space (1824575717376 B)
[2025-07-25 04:49:09] 2025-07-25 11:48:38,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 04:49:09] 2025-07-25 11:48:38,778 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 04:49:09] 2025-07-25 11:48:38,779 | INFO     | update_server=False
[2025-07-25 04:49:09] 2025-07-25 11:48:38,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 04:49:09] 2025-07-25 11:48:38,988 | INFO     | all data control threads have been joined
[2025-07-25 04:49:09] 2025-07-25 11:48:39,272 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 04:49:09] 2025-07-25 11:48:39,273 | INFO     | aborting loop
[2025-07-25 04:49:09] 2025-07-25 11:48:39,422 | INFO     | all job control threads have been joined
[2025-07-25 04:49:09] 2025-07-25 11:48:39,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 04:49:09] 2025-07-25 11:48:39,784 | INFO     | [job] retrieve thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:39,854 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:39,931 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:39,941 | INFO     | [payload] validate_post thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:39,963 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:39,993 | INFO     | [data] control thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:40,015 | INFO     | [data] copytool_in thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:40,166 | INFO     | all payload control threads have been joined
[2025-07-25 04:49:09] 2025-07-25 11:48:40,277 | INFO     | [job] job monitor thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:40,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 04:49:09] 2025-07-25 11:48:40,427 | INFO     | [job] control thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:40,499 | INFO     | [payload] failed_post thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:41,100 | INFO     | [job] validate thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:41,171 | INFO     | [payload] control thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:41,246 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:41,434 | INFO     | [data] copytool_out thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:41,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 04:49:09] 2025-07-25 11:48:42,751 | INFO     | [job] queue monitor thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:44,296 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 04:49:09] 2025-07-25 11:48:45,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140074016556864)>', '<ExcThread(monitor, started 140073605506816)>']
[2025-07-25 04:49:09] 2025-07-25 11:48:50,806 | INFO     | all workflow threads have been joined
[2025-07-25 04:49:09] 2025-07-25 11:48:50,806 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 04:49:09] 2025-07-25 11:48:50,806 | INFO     | traces error code: 0
[2025-07-25 04:49:09] 2025-07-25 11:48:50,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 04:49:09] 2025-07-25 11:49:09,365 | INFO     | PID=749860 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 04:49:09] 2025-07-25 11:49:09,366 | INFO     | .. there are 11 such processes running
[2025-07-25 04:49:09] 2025-07-25 11:49:09,367 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 04:49:09] 2025-07-25 11:49:09,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 04:49:09] 2025-07-25 11:49:09,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 04:49:09] 2025-07-25 11:49:09,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 04:49:09] 2025-07-25 11:49:09,367 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 04:49:09] 2025-07-25 11:49:09,367 | INFO     | [monitor] control thread has ended
[2025-07-25 04:49:09] 2025-07-25 11:49:09,493 [wrapper] ==== pilot stdout END ====
[2025-07-25 04:49:09] 2025-07-25 11:49:09,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 04:49:09] 2025-07-25 11:49:09,496 [wrapper] pilotpid: 749860
[2025-07-25 04:49:09] 2025-07-25 11:49:09,498 [wrapper] Pilot exit status: 0
[2025-07-25 04:49:09] 2025-07-25 11:49:09,504 [wrapper] pandaids: 6744978167
[2025-07-25 04:49:09] 2025-07-25 11:49:09,535 [wrapper] cleanup supervisor_pilot  749866 749861
[2025-07-25 04:49:09] 2025-07-25 11:49:09,537 [wrapper] Test setup, not cleaning
[2025-07-25 04:49:09] 2025-07-25 11:49:09,538 [wrapper] apfmon messages muted
[2025-07-25 04:49:09] 2025-07-25 11:49:09,540 [wrapper] ==== wrapper stdout END ====
[2025-07-25 04:49:09] 2025-07-25 11:49:09,542 [wrapper] ==== wrapper stderr END ====
[2025-07-25 04:49:09]  *** Error codes and diagnostics ***
[2025-07-25 04:49:09]     "exeErrorCode": 65,
[2025-07-25 04:49:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-25 04:49:09]     "pilotErrorCode": 1305,
[2025-07-25 04:49:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-25 04:49:09]  *** Listing of results directory ***
[2025-07-25 04:49:09] total 229120
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc    530466 Jul 25 01:34 pilot3.tar.gz
[2025-07-25 04:49:09] -rwx------. 1 boinc boinc     36292 Jul 25 01:46 runpilot2-wrapper.sh
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc      5112 Jul 25 01:46 queuedata.json
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc       100 Jul 25 04:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 04:49:09] -rwxr-xr-x. 1 boinc boinc      7986 Jul 25 04:45 run_atlas
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc       105 Jul 25 04:45 job.xml
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc      6596 Jul 25 04:45 init_data.xml
[2025-07-25 04:49:09] -rw-r--r--. 2 boinc boinc 230554732 Jul 25 04:45 EVNT.45743347._000969.pool.root.1
[2025-07-25 04:49:09] -rw-r--r--. 2 boinc boinc     15095 Jul 25 04:45 start_atlas.sh
[2025-07-25 04:49:09] drwxrwx--x. 2 boinc boinc      4096 Jul 25 04:45 shared
[2025-07-25 04:49:09] -rw-r--r--. 2 boinc boinc    542890 Jul 25 04:45 input.tar.gz
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc         0 Jul 25 04:45 boinc_lockfile
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc      2562 Jul 25 04:45 pandaJob.out
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc    979317 Jul 25 04:45 agis_schedconf.cvmfs.json
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc   1593052 Jul 25 04:45 agis_ddmendpoints.agis.ALL.json
[2025-07-25 04:49:09] drwx------. 4 boinc boinc      4096 Jul 25 04:45 pilot3
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc       521 Jul 25 04:46 boinc_task_state.xml
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc       967 Jul 25 04:46 memory_monitor_summary.json
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc     20417 Jul 25 04:46 log.45743349._018670.job.log.tgz.1
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc      8405 Jul 25 04:48 heartbeat.json
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc        22 Jul 25 04:49 wrapper_checkpoint.txt
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc      8192 Jul 25 04:49 boinc_mmap_file
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc        95 Jul 25 04:49 pilot_heartbeat.json
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc       892 Jul 25 04:49 pilotlog.txt
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc     74875 Jul 25 04:49 log.45743349._018670.job.log.1
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc       188 Jul 25 04:49 output.list
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc       620 Jul 25 04:49 runtime_log
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc    112640 Jul 25 04:49 result.tar.gz
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc      8485 Jul 25 04:49 runtime_log.err
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc       645 Jul 25 04:49 G85NDmOFTz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmyiyKDmFJShWn.diag
[2025-07-25 04:49:09] -rw-r--r--. 1 boinc boinc     21618 Jul 25 04:49 stderr.txt
[2025-07-25 04:49:09] No HITS result produced
[2025-07-25 04:49:09]  *** Contents of shared directory: ***
[2025-07-25 04:49:09] total 225816
[2025-07-25 04:49:09] -rw-r--r--. 2 boinc boinc 230554732 Jul 25 04:45 ATLAS.root_0
[2025-07-25 04:49:09] -rw-r--r--. 2 boinc boinc     15095 Jul 25 04:45 start_atlas.sh
[2025-07-25 04:49:09] -rw-r--r--. 2 boinc boinc    542890 Jul 25 04:45 input.tar.gz
[2025-07-25 04:49:09] -rw-------. 1 boinc boinc    112640 Jul 25 04:49 result.tar.gz
04:49:10 (746291): run_atlas exited; CPU time 18.213749
04:49:10 (746291): called boinc_finish(0)

</stderr_txt>
]]>

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