Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:23:38 (643981): wrapper (7.7.26015): starting
01:23:38 (643981): wrapper: running run_atlas (--nthreads 3)
[2025-07-26 01:23:38] Arguments: --nthreads 3
[2025-07-26 01:23:38] Threads: 3
[2025-07-26 01:23:38] Checking for CVMFS
[2025-07-26 01:23:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 01:23:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 01:23:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 01:23:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 01:23:38] 2.9.2.0 2944 2403 79760 148757 2 57 36474560 36864000 0 130560 0 1710120 99.988 101020 3364 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-26 01:23:38] CVMFS is ok
[2025-07-26 01:23:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 01:23:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 01:23:38] Further information can be found at the LHC@home message board.
[2025-07-26 01:23:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 01:23:38] Checking for apptainer binary...
[2025-07-26 01:23:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 01:23:38] Running /usr/bin/apptainer --version
[2025-07-26 01:23:39] apptainer version 1.4.1-1.1
[2025-07-26 01:23:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 01:23:39] thA312a
[2025-07-26 01:23:39] apptainer works
[2025-07-26 01:23:39] Set ATHENA_PROC_NUMBER=3
[2025-07-26 01:23:39] Set ATHENA_CORE_NUMBER=3
[2025-07-26 01:23:39] Starting ATLAS job with PandaID=6744952672
[2025-07-26 01:23:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 02:54:42]  *** The last 200 lines of the pilot log: ***
[2025-07-26 02:54:42]  is_tar=False
[2025-07-26 02:54:42]  lfn=log.45743349._016473.job.log.tgz.1
[2025-07-26 02:54:42]  mtime=0
[2025-07-26 02:54:42]  protocol_id=None
[2025-07-26 02:54:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 02:54:42]  replicas=None
[2025-07-26 02:54:42]  scope=mc23_13p6TeV
[2025-07-26 02:54:42]  status=None
[2025-07-26 02:54:42]  status_code=0
[2025-07-26 02:54:42]  storage_token=
[2025-07-26 02:54:42]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6744952672/log.45743349._016473.job.log.tgz.1
[2025-07-26 02:54:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/28/log.45743349._016473.job.log.tgz.1
[2025-07-26 02:54:42]  workdir=None
[2025-07-26 02:54:42] ]
[2025-07-26 02:54:42] 2025-07-26 00:54:04,200 | INFO     | transferring file log.45743349._016473.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6744952672/log.45743349._016473.job.log.tgz.1 to /local/data/boinc/
[2025-07-26 02:54:42] 2025-07-26 00:54:04,200 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6744952672/log.45743349._016473.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0164
[2025-07-26 02:54:42] 2025-07-26 00:54:04,213 | INFO     | adding to output.list: log.45743349._016473.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/28/log.45743349._016473.job.log.tg
[2025-07-26 02:54:42] 2025-07-26 00:54:04,213 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 02:54:42] 2025-07-26 00:54:04,213 | INFO     | summary of transferred files:
[2025-07-26 02:54:42] 2025-07-26 00:54:04,213 | INFO     |  -- lfn=log.45743349._016473.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 02:54:42] 2025-07-26 00:54:04,213 | INFO     | stage-out finished correctly
[2025-07-26 02:54:42] 2025-07-26 00:54:04,243 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 02:54:42] 2025-07-26 00:54:05,817 | INFO     | job 6744952672 has state=finished
[2025-07-26 02:54:42] 2025-07-26 00:54:05,817 | INFO     | preparing for final server update for job 6744952672 in state='finished'
[2025-07-26 02:54:42] 2025-07-26 00:54:05,885 | INFO     | monitor loop #419: job 0:6744952672 is in state 'finished'
[2025-07-26 02:54:42] 2025-07-26 00:54:05,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 02:54:42] 2025-07-26 00:54:06,594 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-26 02:54:42] 2025-07-26 00:54:06,594 | INFO     | this job has now completed (state=finished)
[2025-07-26 02:54:42] 2025-07-26 00:54:06,594 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 02:54:42] 2025-07-26 00:54:06,594 | INFO     | log transfer has been attempted: DONE
[2025-07-26 02:54:42] 2025-07-26 00:54:06,594 | INFO     | job 6744952672 has finished - writing final server update
[2025-07-26 02:54:42] 2025-07-26 00:54:06,594 | INFO     | total number of processed events: 400 (read)
[2025-07-26 02:54:42] 2025-07-26 00:54:06,596 | INFO     | executing command: lscpu
[2025-07-26 02:54:42] 2025-07-26 00:54:06,612 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 02:54:42] 2025-07-26 00:54:08,389 | INFO     | monitor loop #420: job 0:6744952672 is in state 'finished'
[2025-07-26 02:54:42] 2025-07-26 00:54:08,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 02:54:42] 2025-07-26 00:54:10,693 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 02:54:42] 2025-07-26 00:54:10,694 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3765.119666666667
[2025-07-26 02:54:42] 2025-07-26 00:54:10,695 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6744952672/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 02:54:42] 2025-07-26 00:54:10,695 | INFO     | extracted standard info from prmon json
[2025-07-26 02:54:42] 2025-07-26 00:54:10,695 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 02:54:42] 2025-07-26 00:54:10,695 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 02:54:42] 2025-07-26 00:54:10,695 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 02:54:42] 2025-07-26 00:54:10,695 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | fitting pss+swap vs Time
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | sum of square deviations: 170944600.5
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | sum of deviations: -10619359429.5
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | mean x: 1753488619.5
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | mean y: 2499280.5
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | -- intersect: 108932093146.25221
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | intersect: 108932093146.25221
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | chi2: 0.05198278683361608
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | -- intersect: 108932093146.25221
[2025-07-26 02:54:42] 2025-07-26 00:54:10,696 | INFO     | current memory leak: -62.12 B/s (using 82 data points, chi2=0.05)
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | could have reported an average CPU frequency of 3981 MHz (6 samples)
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | ..............................
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | . Timing measurements:
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | . get job = 0 s
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | . initial setup = 1 s
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | . payload setup = 3 s
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | . stage-in = 0 s
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | . payload execution = 5399 s
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | . stage-out = 0 s
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | . log creation = 0 s
[2025-07-26 02:54:42] 2025-07-26 00:54:10,697 | INFO     | ..............................
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | 
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | job summary report
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | --------------------------------------------------
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | PanDA job id: 6744952672
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | task id: 45743349
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | errors: (none)
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | pilot state: finished 
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | transexitcode: 0
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | exeerrorcode: 0
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | exeerrordiag: 
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | exitcode: 0
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | exitmsg: OK
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | cpuconsumptiontime: 15632 s
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | nevents: 400
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | neventsw: 0
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | pid: 654113
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | pgrp: 654113
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | corecount: 3
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | event service: False
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | sizes: {0: 2397476, 3: 2397738, 11: 2397766, 5406: 2424462, 5407: 2433522, 5413: 2433660}
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | --------------------------------------------------
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | 
[2025-07-26 02:54:42] 2025-07-26 00:54:10,728 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,740 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,741 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,741 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,741 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 02:54:42] 2025-07-26 00:54:10,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,741 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 02:54:42] 2025-07-26 00:54:10,741 | INFO     | job 6744952672 has completed (purged errors)
[2025-07-26 02:54:42] 2025-07-26 00:54:10,741 | INFO     | overall cleanup function is called
[2025-07-26 02:54:42] 2025-07-26 00:54:11,748 | INFO     | --- collectZombieJob: --- 10, [654113]
[2025-07-26 02:54:42] 2025-07-26 00:54:11,748 | INFO     | zombie collector waiting for pid 654113
[2025-07-26 02:54:42] 2025-07-26 00:54:11,748 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 02:54:42] 2025-07-26 00:54:11,748 | INFO     | collected zombie processes
[2025-07-26 02:54:42] 2025-07-26 00:54:11,748 | INFO     | will attempt to kill all subprocesses of pid=654113
[2025-07-26 02:54:42] 2025-07-26 00:54:11,787 | INFO     | process IDs to be killed: [654113] (in reverse order)
[2025-07-26 02:54:42] 2025-07-26 00:54:11,810 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 02:54:42] 2025-07-26 00:54:11,811 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 02:54:42] 2025-07-26 00:54:11,812 | INFO     | did not find any defunct processes belonging to 654113
[2025-07-26 02:54:42] 2025-07-26 00:54:11,812 | INFO     | did not find any defunct processes belonging to 654113
[2025-07-26 02:54:42] 2025-07-26 00:54:11,813 | INFO     | ready for new job
[2025-07-26 02:54:42] 2025-07-26 00:54:11,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 02:54:42] 2025-07-26 00:54:11,813 | INFO     | ***************************************
[2025-07-26 02:54:42] 2025-07-26 00:54:11,813 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 02:54:42] 2025-07-26 00:54:11,813 | INFO     | ***************************************
[2025-07-26 02:54:42] 2025-07-26 00:54:11,813 | INFO     | 
[2025-07-26 02:54:42] 2025-07-26 00:54:11,814 | INFO     | architecture information:
[2025-07-26 02:54:42] 2025-07-26 00:54:11,814 | INFO     | executing command: cat /etc/os-release
[2025-07-26 02:54:42] 2025-07-26 00:54:11,822 | INFO     | cat /etc/os-release:
[2025-07-26 02:54:42] NAME="CentOS Linux"
[2025-07-26 02:54:42] VERSION="7 (Core)"
[2025-07-26 02:54:42] ID="centos"
[2025-07-26 02:54:42] ID_LIKE="rhel fedora"
[2025-07-26 02:54:42] VERSION_ID="7"
[2025-07-26 02:54:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 02:54:42] ANSI_COLOR="0;31"
[2025-07-26 02:54:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 02:54:42] HOME_URL="https://www.centos.org/"
[2025-07-26 02:54:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 02:54:42] 
[2025-07-26 02:54:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 02:54:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 02:54:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 02:54:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 02:54:42] 
[2025-07-26 02:54:42] 2025-07-26 00:54:11,823 | INFO     | ***************************************
[2025-07-26 02:54:42] 2025-07-26 00:54:12,326 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-26 02:54:42] 2025-07-26 00:54:12,339 | INFO     | sufficient remaining disk space (263688552448 B)
[2025-07-26 02:54:42] 2025-07-26 00:54:12,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 02:54:42] 2025-07-26 00:54:12,339 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 02:54:42] 2025-07-26 00:54:12,339 | INFO     | update_server=False
[2025-07-26 02:54:42] 2025-07-26 00:54:12,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 02:54:42] 2025-07-26 00:54:12,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 02:54:42] 2025-07-26 00:54:12,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 02:54:42] 2025-07-26 00:54:12,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 02:54:42] 2025-07-26 00:54:12,340 | INFO     | aborting loop
[2025-07-26 02:54:42] 2025-07-26 00:54:12,462 | INFO     | all payload control threads have been joined
[2025-07-26 02:54:42] 2025-07-26 00:54:12,481 | INFO     | all data control threads have been joined
[2025-07-26 02:54:42] 2025-07-26 00:54:13,345 | INFO     | [job] retrieve thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:13,345 | INFO     | [job] queue monitor thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:13,345 | INFO     | [job] job monitor thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:13,468 | INFO     | [payload] control thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:13,487 | INFO     | [data] control thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:13,748 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:13,805 | INFO     | all job control threads have been joined
[2025-07-26 02:54:42] 2025-07-26 00:54:14,120 | INFO     | [data] copytool_in thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:14,345 | INFO     | [data] copytool_out thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:14,372 | INFO     | [payload] validate_post thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:14,572 | INFO     | [job] validate thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:14,616 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:14,656 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:14,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 02:54:42] 2025-07-26 00:54:14,811 | INFO     | [job] control thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:14,849 | INFO     | [payload] failed_post thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:18,791 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:22,395 | INFO     | job.realtimelogging is not enabled
[2025-07-26 02:54:42] 2025-07-26 00:54:23,401 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 02:54:42] 2025-07-26 00:54:23,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140496981415744)>', '<ExcThread(monitor, started 140496357811968)>']
[2025-07-26 02:54:42] 2025-07-26 00:54:29,012 | INFO     | all workflow threads have been joined
[2025-07-26 02:54:42] 2025-07-26 00:54:29,012 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 02:54:42] 2025-07-26 00:54:29,012 | INFO     | traces error code: 0
[2025-07-26 02:54:42] 2025-07-26 00:54:29,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 02:54:42] 2025-07-26 00:54:41,172 | INFO     | 5427s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-26 02:54:42] 2025-07-26 00:54:42,229 | INFO     | PID=647618 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 02:54:42] 2025-07-26 00:54:42,229 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 02:54:42] 2025-07-26 00:54:42,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 02:54:42] 2025-07-26 00:54:42,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 02:54:42] 2025-07-26 00:54:42,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 02:54:42] 2025-07-26 00:54:42,229 | INFO     | [monitor] control thread has ended
[2025-07-26 02:54:42] 2025-07-26 00:54:42,274 [wrapper] ==== pilot stdout END ====
[2025-07-26 02:54:42] 2025-07-26 00:54:42,277 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 02:54:42] 2025-07-26 00:54:42,279 [wrapper] pilotpid: 647618
[2025-07-26 02:54:42] 2025-07-26 00:54:42,281 [wrapper] Pilot exit status: 0
[2025-07-26 02:54:42] 2025-07-26 00:54:42,289 [wrapper] pandaids: 6744952672
[2025-07-26 02:54:42] 2025-07-26 00:54:42,305 [wrapper] cleanup supervisor_pilot  666383 647619
[2025-07-26 02:54:42] 2025-07-26 00:54:42,307 [wrapper] Test setup, not cleaning
[2025-07-26 02:54:42] 2025-07-26 00:54:42,310 [wrapper] apfmon messages muted
[2025-07-26 02:54:42] 2025-07-26 00:54:42,312 [wrapper] ==== wrapper stdout END ====
[2025-07-26 02:54:42] 2025-07-26 00:54:42,314 [wrapper] ==== wrapper stderr END ====
[2025-07-26 02:54:42]  *** Error codes and diagnostics ***
[2025-07-26 02:54:42]     "exeErrorCode": 0,
[2025-07-26 02:54:42]     "exeErrorDiag": "",
[2025-07-26 02:54:42]     "pilotErrorCode": 0,
[2025-07-26 02:54:42]     "pilotErrorDiag": "",
[2025-07-26 02:54:42]  *** Listing of results directory ***
[2025-07-26 02:54:42] total 354568
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc    530466 Jul 25 07:16 pilot3.tar.gz
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc      5112 Jul 25 07:19 queuedata.json
[2025-07-26 02:54:42] -rwx------ 1 boinc boinc     36292 Jul 25 07:20 runpilot2-wrapper.sh
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc       100 Jul 26 01:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 02:54:42] -rwxr-xr-x 1 boinc boinc      7986 Jul 26 01:23 run_atlas
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc       105 Jul 26 01:23 job.xml
[2025-07-26 02:54:42] -rw-r--r-- 2 boinc boinc 146390411 Jul 26 01:23 EVNT.45743347._000925.pool.root.1
[2025-07-26 02:54:42] -rw-r--r-- 2 boinc boinc    542888 Jul 26 01:23 input.tar.gz
[2025-07-26 02:54:42] -rw-r--r-- 2 boinc boinc     15095 Jul 26 01:23 start_atlas.sh
[2025-07-26 02:54:42] drwxrwx--x 2 boinc boinc      4096 Jul 26 01:23 shared
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc         0 Jul 26 01:23 boinc_setup_complete
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc      6449 Jul 26 01:23 init_data.xml
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc         0 Jul 26 01:23 boinc_lockfile
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc      2562 Jul 26 01:23 pandaJob.out
[2025-07-26 02:54:42] -rw------- 1 boinc boinc    980001 Jul 26 01:23 agis_schedconf.cvmfs.json
[2025-07-26 02:54:42] -rw------- 1 boinc boinc   1593052 Jul 26 01:23 agis_ddmendpoints.agis.ALL.json
[2025-07-26 02:54:42] drwx------ 4 boinc boinc      4096 Jul 26 01:23 pilot3
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc       529 Jul 26 02:53 boinc_task_state.xml
[2025-07-26 02:54:42] -rw------- 1 boinc boinc 211308539 Jul 26 02:53 HITS.45743349._016473.pool.root.1
[2025-07-26 02:54:42] -rw------- 1 boinc boinc      1016 Jul 26 02:54 memory_monitor_summary.json
[2025-07-26 02:54:42] -rw------- 1 boinc boinc    230172 Jul 26 02:54 log.45743349._016473.job.log.tgz.1
[2025-07-26 02:54:42] -rw------- 1 boinc boinc        95 Jul 26 02:54 pilot_heartbeat.json
[2025-07-26 02:54:42] -rw------- 1 boinc boinc      7750 Jul 26 02:54 heartbeat.json
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc      8192 Jul 26 02:54 boinc_mmap_file
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc        27 Jul 26 02:54 wrapper_checkpoint.txt
[2025-07-26 02:54:42] -rw------- 1 boinc boinc       861 Jul 26 02:54 pilotlog.txt
[2025-07-26 02:54:42] -rw------- 1 boinc boinc    522339 Jul 26 02:54 log.45743349._016473.job.log.1
[2025-07-26 02:54:42] -rw------- 1 boinc boinc       357 Jul 26 02:54 output.list
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc       620 Jul 26 02:54 runtime_log
[2025-07-26 02:54:42] -rw------- 1 boinc boinc    768000 Jul 26 02:54 result.tar.gz
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc      8739 Jul 26 02:54 runtime_log.err
[2025-07-26 02:54:42] -rw------- 1 boinc boinc       659 Jul 26 02:54 7C8LDmH2Pz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNlOLDmt4hCRo.diag
[2025-07-26 02:54:42] -rw-r--r-- 1 boinc boinc     21536 Jul 26 02:54 stderr.txt
[2025-07-26 02:54:42] HITS file was successfully produced:
[2025-07-26 02:54:42] -rw------- 1 boinc boinc 211308539 Jul 26 02:53 shared/HITS.pool.root.1
[2025-07-26 02:54:42]  *** Contents of shared directory: ***
[2025-07-26 02:54:42] total 350624
[2025-07-26 02:54:42] -rw-r--r-- 2 boinc boinc 146390411 Jul 26 01:23 ATLAS.root_0
[2025-07-26 02:54:42] -rw-r--r-- 2 boinc boinc    542888 Jul 26 01:23 input.tar.gz
[2025-07-26 02:54:42] -rw-r--r-- 2 boinc boinc     15095 Jul 26 01:23 start_atlas.sh
[2025-07-26 02:54:42] -rw------- 1 boinc boinc 211308539 Jul 26 02:53 HITS.pool.root.1
[2025-07-26 02:54:42] -rw------- 1 boinc boinc    768000 Jul 26 02:54 result.tar.gz
02:54:43 (643981): run_atlas exited; CPU time 15648.650767
02:54:43 (643981): called boinc_finish(0)

</stderr_txt>
]]>

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