Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 14:24:25 (4596): Detected: vboxwrapper 26206
2025-07-25 14:24:25 (4596): Detected: BOINC client v8.2.4
2025-07-25 14:24:28 (4596): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-07-25 14:24:31 (4596): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 14:24:34 (4596): Create VM. (boinc_c5f29bc33d956f37, slot#0)
2025-07-25 14:24:36 (4596): Setting Memory Size for VM. (4200MB)
2025-07-25 14:24:37 (4596): Setting CPU Count for VM. (2)
2025-07-25 14:24:38 (4596): Setting Chipset Options for VM.
2025-07-25 14:24:38 (4596): Setting Graphics Controller Options for VM.
2025-07-25 14:24:39 (4596): Setting Boot Options for VM.
2025-07-25 14:24:40 (4596): Setting Network Configuration for NAT.
2025-07-25 14:24:40 (4596): Enabling VM Network Access.
2025-07-25 14:24:41 (4596): Disabling USB Support for VM.
2025-07-25 14:24:42 (4596): Disabling COM Port Support for VM.
2025-07-25 14:24:43 (4596): Disabling LPT Port Support for VM.
2025-07-25 14:24:43 (4596): Disabling Audio Support for VM.
2025-07-25 14:24:44 (4596): Disabling Clipboard Support for VM.
2025-07-25 14:24:45 (4596): Disabling Drag and Drop Support for VM.
2025-07-25 14:24:46 (4596): Adding storage controller(s) to VM.
2025-07-25 14:24:46 (4596): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 14:24:53 (4596): Adding VirtualBox Guest Additions to VM.
2025-07-25 14:24:54 (4596): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 14:24:54 (4596): forwarding host port 60014 to guest port 80
2025-07-25 14:24:55 (4596): Enabling remote desktop for VM.
2025-07-25 14:24:55 (4596): Required extension pack not installed, remote desktop not enabled.
2025-07-25 14:24:55 (4596): Enabling shared directory for VM.
2025-07-25 14:24:57 (4596): Starting VM using VBoxManage interface. (boinc_c5f29bc33d956f37, slot#0)
2025-07-25 14:25:43 (4596): Successfully started VM. (PID = '6516')
2025-07-25 14:25:43 (4596): Reporting VM Process ID to BOINC.
2025-07-25 14:25:43 (4596): Guest Log: BIOS: VirtualBox 7.1.10
2025-07-25 14:25:43 (4596): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 14:25:43 (4596): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 14:25:43 (4596): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 14:25:43 (4596): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 14:25:43 (4596): Detected: Web Application Enabled (http://localhost:60014)
2025-07-25 14:25:43 (4596): Preference change detected
2025-07-25 14:25:43 (4596): Setting CPU throttle for VM. (100%)
2025-07-25 14:25:44 (4596): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 14:25:45 (4596): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 14:25:45 (4596): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 14:25:53 (4596): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 14:25:53 (4596): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 14:25:53 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 14:25:54 (4596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 14:26:21 (4596): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 14:26:21 (4596): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 14:27:12 (4596): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 14:27:12 (4596): Guest Log: 00:00:00.000880 main     Log opened 2025-07-25T14:27:10.103975000Z
2025-07-25 14:27:12 (4596): Guest Log: 00:00:00.001760 main     OS Product: Linux
2025-07-25 14:27:12 (4596): Guest Log: 00:00:00.002147 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 14:27:12 (4596): Guest Log: 00:00:00.002304 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 14:27:12 (4596): Guest Log: 00:00:00.002518 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 14:27:12 (4596): Guest Log: 00:00:00.002523 main     Process ID: 1271
2025-07-25 14:27:12 (4596): Guest Log: 00:00:00.002526 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 14:27:12 (4596): Guest Log: 00:00:00.008805 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 14:27:13 (4596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 14:27:13 (4596): Guest Log: [INFO] Mounting shared directory
2025-07-25 14:27:13 (4596): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 14:27:22 (4596): Guest Log: 00:00:10.033137 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 715 371 000ns (GuestNow=1 753 442 841 412 389 000 ns GuestLast=1 753 453 630 127 760 000 ns fSetTimeLastLoop=true )
2025-07-25 14:27:22 (4596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 14:27:22 (4596): Guest Log: [INFO] Detected branch: prod
2025-07-25 14:27:23 (4596): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 14:27:23 (4596): Guest Log: Copying input files
2025-07-25 14:27:31 (4596): Guest Log: Copied input files into RunAtlas.
2025-07-25 14:27:32 (4596): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 14:27:32 (4596): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 14:27:32 (4596): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 14:27:32 (4596): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 14:27:43 (4596): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 14:27:44 (4596): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 14:27:44 (4596): Guest Log: 2.6.3.0 1548 0 32164 148738 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 14:27:51 (4596): Guest Log: copied the webapp to /var/www
2025-07-25 14:27:51 (4596): Guest Log: ATHENA_PROC_NUMBER=2
2025-07-25 14:27:51 (4596): Guest Log: ATHENA_CORE_NUMBER=2
2025-07-25 14:27:56 (4596): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 14:27:56 (4596): Guest Log:  *** Starting ATLAS job. (PandaID=6744945231 taskID=45743349) ***
2025-07-25 14:50:39 (4596): Guest Log:  *** Job finished ***
2025-07-25 14:50:39 (4596): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 14:50:39 (4596): Guest Log: 2025-07-25 11:49:42,394 | INFO     | all workflow threads have been joined
2025-07-25 14:50:39 (4596): Guest Log: 2025-07-25 11:49:42,395 | INFO     | end of generic workflow (traces error code: 0)
2025-07-25 14:50:39 (4596): Guest Log: 2025-07-25 11:49:42,397 | INFO     | traces error code: 0
2025-07-25 14:50:39 (4596): Guest Log: 2025-07-25 11:49:42,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 14:50:39 (4596): Guest Log: 2025-07-25 11:50:03,054 | INFO     | PID=5856 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-25 14:50:39 (4596): Guest Log: 2025-07-25 11:50:03,060 | INFO     | found 0 job(s) in 20 queues
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:03,063 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:03,064 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:03,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:03,068 | INFO     | [monitor] control thread has ended
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:03,768 [wrapper] ==== pilot stdout END ====
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:03,818 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:03,862 [wrapper] pilotpid: 5856
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:03,902 [wrapper] Pilot exit status: 0
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:04,322 [wrapper] pandaids: 6744945231
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:04,641 [wrapper] cleanup supervisor_pilot 28924 5857
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:04,680 [wrapper] Test setup, not cleaning
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:04,726 [wrapper] apfmon messages muted
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:04,770 [wrapper] ==== wrapper stdout END ====
2025-07-25 14:50:40 (4596): Guest Log: 2025-07-25 11:50:04,813 [wrapper] ==== wrapper stderr END ====
2025-07-25 14:50:40 (4596): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 14:50:40 (4596): Guest Log:     "exeErrorCode": 65,
2025-07-25 14:50:40 (4596): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-25 14:50:40 (4596): Guest Log:     "pilotErrorCode": 1305,
2025-07-25 14:50:40 (4596): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-25 14:50:40 (4596): Guest Log:  *** Listing of results directory ***
2025-07-25 14:50:40 (4596): Guest Log: total 4356
2025-07-25 14:50:40 (4596): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 25 00:40 pilot3.tar.gz
2025-07-25 14:50:40 (4596): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 25 01:07 runpilot2-wrapper.sh
2025-07-25 14:50:40 (4596): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 25 01:07 queuedata.json
2025-07-25 14:50:40 (4596): Guest Log: -rwxr-xr-x. 1 atlas atlas    8196 Jul 25 11:27 init_data.xml
2025-07-25 14:50:40 (4596): Guest Log: -rwxr-xr-x. 1 atlas atlas  542878 Jul 25 11:27 input.tar.gz
2025-07-25 14:50:40 (4596): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 25 11:27 start_atlas.sh
2025-07-25 14:50:40 (4596): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 25 11:27 EVNT.45743347._000768.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 14:50:40 (4596): Guest Log: -rw-r--r--. 1 atlas atlas    2558 Jul 25 11:27 pandaJob.out
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas  979717 Jul 25 11:30 agis_schedconf.cvmfs.json
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas 1593052 Jul 25 11:30 agis_ddmendpoints.agis.ALL.json
2025-07-25 14:50:40 (4596): Guest Log: drwx------. 4 atlas atlas    4096 Jul 25 11:30 pilot3
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas   58486 Jul 25 11:46 log.45743349._013996.job.log.tgz.1
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas      95 Jul 25 11:49 pilot_heartbeat.json
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas    8161 Jul 25 11:49 heartbeat.json
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas     744 Jul 25 11:50 pilotlog.txt
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas  273415 Jul 25 11:50 log.45743349._013996.job.log.1
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas     188 Jul 25 11:50 output.list
2025-07-25 14:50:40 (4596): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 25 11:50 runtime_log
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas  348160 Jul 25 11:50 result.tar.gz
2025-07-25 14:50:40 (4596): Guest Log: -rw-r--r--. 1 atlas atlas    8440 Jul 25 11:50 runtime_log.err
2025-07-25 14:50:40 (4596): Guest Log: -rw-------. 1 atlas atlas     650 Jul 25 11:50 IoeNDmk5Lz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmwEyKDmd1hRmn.diag
2025-07-25 14:50:40 (4596): Guest Log: Looking for outputfile HITS.45743349._013996.pool.root.1
2025-07-25 14:50:40 (4596): Guest Log: No HITS file was produced
2025-07-25 14:50:40 (4596): Guest Log: Successfully finished the ATLAS job!
2025-07-25 14:50:40 (4596): Guest Log: Copying the results back to the shared directory!
2025-07-25 14:50:40 (4596): Guest Log:  *** Contents of shared directory: ***
2025-07-25 14:50:40 (4596): Guest Log: total 143252
2025-07-25 14:50:40 (4596): Guest Log: -rwxrwxrwx. 1 root root 145766343 Jul 25 11:24 ATLAS.root_0
2025-07-25 14:50:40 (4596): Guest Log: -rwxrwxrwx. 1 root root      8196 Jul 25 11:24 init_data.xml
2025-07-25 14:50:40 (4596): Guest Log: -rwxrwxrwx. 1 root root    542878 Jul 25 11:23 input.tar.gz
2025-07-25 14:50:40 (4596): Guest Log: -rwxrwxrwx. 1 root root    348160 Jul 25 11:50 result.tar.gz
2025-07-25 14:50:40 (4596): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 11:23 start_atlas.sh
2025-07-25 14:50:40 (4596): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 14:50:40 (4596): Guest Log: 00:23:13.810063 control  Guest control service stopped
2025-07-25 14:50:40 (4596): Guest Log: 00:23:14.488265 control  Guest control worker returned with rc=VINF_SUCCESS
2025-07-25 14:50:40 (4596): Guest Log: 00:23:14.488875 main     Session 0 is about to close ...
2025-07-25 14:50:40 (4596): Guest Log: 00:23:14.489367 main     Stopping all guest processes ...
2025-07-25 14:50:40 (4596): Guest Log: 00:23:14.489560 main     Closing all guest files ...
2025-07-25 14:50:40 (4596): Guest Log: 00:23:15.196723 main     Ended.
2025-07-25 14:50:40 (4596): VM Completion File Detected.
2025-07-25 14:50:40 (4596): Powering off VM.
2025-07-25 14:51:34 (4596): Error in poweroff VM for VM: -108
Command:
VBoxManage -q controlvm "boinc_c5f29bc33d956f37" poweroff
Output:
VBoxManage.exe: error: Machine 'boinc_c5f29bc33d956f37' is not currently running.

2025-07-25 14:51:34 (4596): VM did not power off when requested.
2025-07-25 14:51:34 (4596): VM was NOT successfully terminated.
2025-07-25 14:51:34 (4596): Deregistering VM. (boinc_c5f29bc33d956f37, slot#0)
2025-07-25 14:51:43 (4596): Removing network bandwidth throttle group from VM.
2025-07-25 14:51:48 (4596): Removing VM from VirtualBox.
14:51:59 (4596): called boinc_finish(0)

</stderr_txt>
]]>

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