Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:16:13 (1575484): wrapper (7.7.26015): starting
07:16:13 (1575484): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 07:16:13] Arguments: --nthreads 8
[2025-07-25 07:16:13] Threads: 8
[2025-07-25 07:16:13] Checking for CVMFS
[2025-07-25 07:16:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 07:16:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 07:16:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 07:16:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 07:16:13] 2.13.1.0 285388 5423 91644 148738 0 188 10378884 40960001 12923 16776704 0 65912956 99.998 229676 28959 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 07:16:13] CVMFS is ok
[2025-07-25 07:16:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 07:16:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 07:16:13] Further information can be found at the LHC@home message board.
[2025-07-25 07:16:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 07:16:13] Checking for apptainer binary...
[2025-07-25 07:16:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 07:16:13] Running /usr/bin/apptainer --version
[2025-07-25 07:16:13] apptainer version 1.4.1-1.el9
[2025-07-25 07:16:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 07:16:13] c-208-36.aglt2.org
[2025-07-25 07:16:13] apptainer works
[2025-07-25 07:16:13] Set ATHENA_PROC_NUMBER=8
[2025-07-25 07:16:13] Set ATHENA_CORE_NUMBER=8
[2025-07-25 07:16:13] Starting ATLAS job with PandaID=6744951980
[2025-07-25 07:16:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 08:11:13]  *** The last 200 lines of the pilot log: ***
[2025-07-25 08:11:13]  lfn=log.45743349._016196.job.log.tgz.1
[2025-07-25 08:11:13]  mtime=0
[2025-07-25 08:11:13]  protocol_id=None
[2025-07-25 08:11:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-25 08:11:13]  replicas=None
[2025-07-25 08:11:13]  scope=mc23_13p6TeV
[2025-07-25 08:11:13]  status=None
[2025-07-25 08:11:13]  status_code=0
[2025-07-25 08:11:13]  storage_token=
[2025-07-25 08:11:13]  surl=/tmp/boinchome/slots/11/PanDA_Pilot-6744951980/log.45743349._016196.job.log.tgz.1
[2025-07-25 08:11:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/ac/log.45743349._016196.job.log.tgz.1
[2025-07-25 08:11:13]  workdir=None
[2025-07-25 08:11:13] ]
[2025-07-25 08:11:13] 2025-07-25 12:10:33,805 | INFO     | transferring file log.45743349._016196.job.log.tgz.1 from /tmp/boinchome/slots/11/PanDA_Pilot-6744951980/log.45743349._016196.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-25 08:11:13] 2025-07-25 12:10:33,806 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/11/PanDA_Pilot-6744951980/log.45743349._016196.job.log.tgz.1 /tmp/boinchome/slots/11/log.45743349._016196.j
[2025-07-25 08:11:13] 2025-07-25 12:10:33,826 | INFO     | adding to output.list: log.45743349._016196.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/ac/log.45743349._016196.job.log.tg
[2025-07-25 08:11:13] 2025-07-25 12:10:33,827 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 08:11:13] 2025-07-25 12:10:33,827 | INFO     | summary of transferred files:
[2025-07-25 08:11:13] 2025-07-25 12:10:33,827 | INFO     |  -- lfn=log.45743349._016196.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 08:11:13] 2025-07-25 12:10:33,827 | INFO     | stage-out finished correctly
[2025-07-25 08:11:13] 2025-07-25 12:10:35,717 | INFO     | monitor loop #241: job 0:6744951980 is in state 'finished'
[2025-07-25 08:11:13] 2025-07-25 12:10:35,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:11:13] 2025-07-25 12:10:36,211 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 08:11:13] 2025-07-25 12:10:37,550 | INFO     | job 6744951980 has state=finished
[2025-07-25 08:11:13] 2025-07-25 12:10:37,550 | INFO     | preparing for final server update for job 6744951980 in state='finished'
[2025-07-25 08:11:13] 2025-07-25 12:10:37,551 | INFO     | this job has now completed (state=finished)
[2025-07-25 08:11:13] 2025-07-25 12:10:37,551 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 08:11:13] 2025-07-25 12:10:37,551 | INFO     | log transfer has been attempted: DONE
[2025-07-25 08:11:13] 2025-07-25 12:10:37,551 | INFO     | job 6744951980 has finished - writing final server update
[2025-07-25 08:11:13] 2025-07-25 12:10:37,551 | INFO     | total number of processed events: 400 (read)
[2025-07-25 08:11:13] 2025-07-25 12:10:37,552 | INFO     | executing command: lscpu
[2025-07-25 08:11:13] 2025-07-25 12:10:37,611 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 08:11:13] 2025-07-25 12:10:38,222 | INFO     | monitor loop #242: job 0:6744951980 is in state 'finished'
[2025-07-25 08:11:13] 2025-07-25 12:10:38,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:11:13] 2025-07-25 12:10:40,726 | INFO     | monitor loop #243: job 0:6744951980 is in state 'finished'
[2025-07-25 08:11:13] 2025-07-25 12:10:40,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:11:13] 2025-07-25 12:10:41,274 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 08:11:13] 2025-07-25 12:10:41,279 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3778.6201484374997
[2025-07-25 08:11:13] 2025-07-25 12:10:41,292 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6744951980/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 08:11:13] 2025-07-25 12:10:41,293 | INFO     | extracted standard info from prmon json
[2025-07-25 08:11:13] 2025-07-25 12:10:41,293 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 08:11:13] 2025-07-25 12:10:41,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 08:11:13] 2025-07-25 12:10:41,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 08:11:13] 2025-07-25 12:10:41,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 08:11:13] 2025-07-25 12:10:41,294 | INFO     | fitting pss+swap vs Time
[2025-07-25 08:11:13] 2025-07-25 12:10:41,294 | INFO     | sum of square deviations: 30168007.5
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | sum of deviations: 21674519.999999996
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | mean x: 1753443885.5
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | mean y: 2522382.304347826
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | -- intersect: -1257257686.536707
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | intersect: -1257257686.536707
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | chi2: 0.00030683153056164673
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | -- intersect: -1257257686.536707
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | current memory leak: 0.72 B/s (using 46 data points, chi2=0.00)
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | could have reported an average CPU frequency of 3783 MHz (5 samples)
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | ..............................
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | . Timing measurements:
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | . get job = 0 s
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | . initial setup = 2 s
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | . payload setup = 5 s
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | . stage-in = 0 s
[2025-07-25 08:11:13] 2025-07-25 12:10:41,295 | INFO     | . payload execution = 3226 s
[2025-07-25 08:11:13] 2025-07-25 12:10:41,296 | INFO     | . stage-out = 0 s
[2025-07-25 08:11:13] 2025-07-25 12:10:41,296 | INFO     | . log creation = 0 s
[2025-07-25 08:11:13] 2025-07-25 12:10:41,296 | INFO     | ..............................
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | 
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | job summary report
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | --------------------------------------------------
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | PanDA job id: 6744951980
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | task id: 45743349
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | errors: (none)
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | pilot state: finished 
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | transexitcode: 0
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | exeerrorcode: 0
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | exeerrordiag: 
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | exitcode: 0
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | exitmsg: OK
[2025-07-25 08:11:13] 2025-07-25 12:10:41,810 | INFO     | cpuconsumptiontime: 24263 s
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | nevents: 400
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | neventsw: 0
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | pid: 1586521
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | pgrp: 1586521
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | corecount: 8
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | event service: False
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | sizes: {0: 2397474, 4: 2397736, 11: 2397764, 3235: 2423288, 3236: 2432288, 3238: 2432344, 3243: 2432698}
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | --------------------------------------------------
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | 
[2025-07-25 08:11:13] 2025-07-25 12:10:41,811 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2025-07-25 08:11:13] 2025-07-25 12:10:41,829 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,829 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,829 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,829 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,829 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,829 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,829 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 08:11:13] 2025-07-25 12:10:41,830 | INFO     | job 6744951980 has completed (purged errors)
[2025-07-25 08:11:13] 2025-07-25 12:10:41,831 | INFO     | overall cleanup function is called
[2025-07-25 08:11:13] 2025-07-25 12:10:42,838 | INFO     | --- collectZombieJob: --- 10, [1586521]
[2025-07-25 08:11:13] 2025-07-25 12:10:42,838 | INFO     | zombie collector waiting for pid 1586521
[2025-07-25 08:11:13] 2025-07-25 12:10:42,838 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 08:11:13] 2025-07-25 12:10:42,838 | INFO     | collected zombie processes
[2025-07-25 08:11:13] 2025-07-25 12:10:42,838 | INFO     | will attempt to kill all subprocesses of pid=1586521
[2025-07-25 08:11:13] 2025-07-25 12:10:43,186 | INFO     | process IDs to be killed: [1586521] (in reverse order)
[2025-07-25 08:11:13] 2025-07-25 12:10:43,304 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 08:11:13] 2025-07-25 12:10:43,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 08:11:13] 2025-07-25 12:10:43,320 | INFO     | did not find any defunct processes belonging to 1586521
[2025-07-25 08:11:13] 2025-07-25 12:10:43,332 | INFO     | did not find any defunct processes belonging to 1586521
[2025-07-25 08:11:13] 2025-07-25 12:10:43,332 | INFO     | ready for new job
[2025-07-25 08:11:13] 2025-07-25 12:10:43,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 08:11:13] 2025-07-25 12:10:43,333 | INFO     | ***************************************
[2025-07-25 08:11:13] 2025-07-25 12:10:43,334 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 08:11:13] 2025-07-25 12:10:43,334 | INFO     | ***************************************
[2025-07-25 08:11:13] 2025-07-25 12:10:43,334 | INFO     | 
[2025-07-25 08:11:13] 2025-07-25 12:10:43,338 | INFO     | architecture information:
[2025-07-25 08:11:13] 2025-07-25 12:10:43,339 | INFO     | executing command: cat /etc/os-release
[2025-07-25 08:11:13] 2025-07-25 12:10:43,354 | INFO     | cat /etc/os-release:
[2025-07-25 08:11:13] NAME="CentOS Linux"
[2025-07-25 08:11:13] VERSION="7 (Core)"
[2025-07-25 08:11:13] ID="centos"
[2025-07-25 08:11:13] ID_LIKE="rhel fedora"
[2025-07-25 08:11:13] VERSION_ID="7"
[2025-07-25 08:11:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 08:11:13] ANSI_COLOR="0;31"
[2025-07-25 08:11:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 08:11:13] HOME_URL="https://www.centos.org/"
[2025-07-25 08:11:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 08:11:13] 
[2025-07-25 08:11:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 08:11:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 08:11:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 08:11:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 08:11:13] 
[2025-07-25 08:11:13] 2025-07-25 12:10:43,354 | INFO     | ***************************************
[2025-07-25 08:11:13] 2025-07-25 12:10:43,857 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2025-07-25 08:11:13] 2025-07-25 12:10:43,874 | INFO     | sufficient remaining disk space (166095486976 B)
[2025-07-25 08:11:13] 2025-07-25 12:10:43,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 08:11:13] 2025-07-25 12:10:43,874 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 08:11:13] 2025-07-25 12:10:43,874 | INFO     | update_server=False
[2025-07-25 08:11:13] 2025-07-25 12:10:43,874 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 08:11:13] 2025-07-25 12:10:43,980 | INFO     | all data control threads have been joined
[2025-07-25 08:11:13] 2025-07-25 12:10:44,233 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:11:13] 2025-07-25 12:10:44,233 | INFO     | aborting loop
[2025-07-25 08:11:13] 2025-07-25 12:10:44,340 | INFO     | all payload control threads have been joined
[2025-07-25 08:11:13] 2025-07-25 12:10:44,395 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 08:11:13] 2025-07-25 12:10:44,880 | INFO     | [job] retrieve thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:44,955 | INFO     | all job control threads have been joined
[2025-07-25 08:11:13] 2025-07-25 12:10:44,983 | INFO     | [data] control thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:45,237 | INFO     | [job] job monitor thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:45,346 | INFO     | [payload] control thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:45,552 | INFO     | [data] copytool_in thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:45,558 | INFO     | [payload] validate_post thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:45,566 | INFO     | [payload] failed_post thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:45,958 | INFO     | [job] validate thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:45,959 | INFO     | [job] control thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:46,052 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:46,194 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:46,316 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:46,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:11:13] 2025-07-25 12:10:46,396 | INFO     | [data] copytool_out thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:46,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 08:11:13] 2025-07-25 12:10:47,371 | INFO     | [job] queue monitor thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:50,782 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:54,649 | INFO     | job.realtimelogging is not enabled
[2025-07-25 08:11:13] 2025-07-25 12:10:55,653 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 08:11:13] 2025-07-25 12:10:56,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140616522884928)>', '<ExcThread(monitor, started 140615819982592)>']
[2025-07-25 08:11:13] 2025-07-25 12:11:02,010 | INFO     | all workflow threads have been joined
[2025-07-25 08:11:13] 2025-07-25 12:11:02,010 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 08:11:13] 2025-07-25 12:11:02,011 | INFO     | traces error code: 0
[2025-07-25 08:11:13] 2025-07-25 12:11:02,011 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 08:11:13] 2025-07-25 12:11:13,345 | INFO     | PID=1579091 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 08:11:13] 2025-07-25 12:11:13,345 | INFO     | .. there are 16 such processes running
[2025-07-25 08:11:13] 2025-07-25 12:11:13,345 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 08:11:13] 2025-07-25 12:11:13,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 08:11:13] 2025-07-25 12:11:13,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 08:11:13] 2025-07-25 12:11:13,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 08:11:13] 2025-07-25 12:11:13,346 | INFO     | [monitor] control thread has ended
[2025-07-25 08:11:13] 2025-07-25 12:11:13,434 [wrapper] ==== pilot stdout END ====
[2025-07-25 08:11:13] 2025-07-25 12:11:13,437 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 08:11:13] 2025-07-25 12:11:13,440 [wrapper] pilotpid: 1579091
[2025-07-25 08:11:13] 2025-07-25 12:11:13,442 [wrapper] Pilot exit status: 0
[2025-07-25 08:11:13] 2025-07-25 12:11:13,455 [wrapper] pandaids: 6744951980
[2025-07-25 08:11:13] 2025-07-25 12:11:13,541 [wrapper] cleanup supervisor_pilot 1871101 1579092
[2025-07-25 08:11:13] 2025-07-25 12:11:13,544 [wrapper] Test setup, not cleaning
[2025-07-25 08:11:13] 2025-07-25 12:11:13,546 [wrapper] apfmon messages muted
[2025-07-25 08:11:13] 2025-07-25 12:11:13,549 [wrapper] ==== wrapper stdout END ====
[2025-07-25 08:11:13] 2025-07-25 12:11:13,551 [wrapper] ==== wrapper stderr END ====
[2025-07-25 08:11:13]  *** Error codes and diagnostics ***
[2025-07-25 08:11:13]     "exeErrorCode": 0,
[2025-07-25 08:11:13]     "exeErrorDiag": "",
[2025-07-25 08:11:13]     "pilotErrorCode": 0,
[2025-07-25 08:11:13]     "pilotErrorDiag": "",
[2025-07-25 08:11:13]  *** Listing of results directory ***
[2025-07-25 08:11:13] total 348216
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 00:28 pilot3.tar.gz
[2025-07-25 08:11:13] -rwx------. 1 boincer umatlas     36292 Jul 25 00:42 runpilot2-wrapper.sh
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 00:42 queuedata.json
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas       100 Jul 25 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 08:11:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 07:16 run_atlas
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas       105 Jul 25 07:16 job.xml
[2025-07-25 08:11:13] -rw-r--r--. 2 boincer umatlas 143605598 Jul 25 07:16 EVNT.45743347._000907.pool.root.1
[2025-07-25 08:11:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 07:16 start_atlas.sh
[2025-07-25 08:11:13] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 07:16 shared
[2025-07-25 08:11:13] -rw-r--r--. 2 boincer umatlas    542895 Jul 25 07:16 input.tar.gz
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas         0 Jul 25 07:16 boinc_lockfile
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 07:16 pandaJob.out
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas    979717 Jul 25 07:16 agis_schedconf.cvmfs.json
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas   1593052 Jul 25 07:16 agis_ddmendpoints.agis.ALL.json
[2025-07-25 08:11:13] drwx------. 4 boincer umatlas      4096 Jul 25 07:16 pilot3
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas       529 Jul 25 08:10 boinc_task_state.xml
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas 207842802 Jul 25 08:10 HITS.45743349._016196.pool.root.1
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas      1028 Jul 25 08:10 memory_monitor_summary.json
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas        95 Jul 25 08:10 pilot_heartbeat.json
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas    287561 Jul 25 08:10 log.45743349._016196.job.log.tgz.1
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas      7762 Jul 25 08:10 heartbeat.json
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas      7174 Jul 25 08:11 init_data.xml
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 08:11 boinc_mmap_file
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas        27 Jul 25 08:11 wrapper_checkpoint.txt
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas       823 Jul 25 08:11 pilotlog.txt
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas    337272 Jul 25 08:11 log.45743349._016196.job.log.1
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas       357 Jul 25 08:11 output.list
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas       620 Jul 25 08:11 runtime_log
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas    645120 Jul 25 08:11 result.tar.gz
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas       651 Jul 25 08:11 TV7NDmKRPz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm7TyKDmRxPsNn.diag
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas      8674 Jul 25 08:11 runtime_log.err
[2025-07-25 08:11:13] -rw-r--r--. 1 boincer umatlas     21663 Jul 25 08:11 stderr.txt
[2025-07-25 08:11:13] HITS file was successfully produced:
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas 207842802 Jul 25 08:10 shared/HITS.pool.root.1
[2025-07-25 08:11:13]  *** Contents of shared directory: ***
[2025-07-25 08:11:13] total 344396
[2025-07-25 08:11:13] -rw-r--r--. 2 boincer umatlas 143605598 Jul 25 07:16 ATLAS.root_0
[2025-07-25 08:11:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 07:16 start_atlas.sh
[2025-07-25 08:11:13] -rw-r--r--. 2 boincer umatlas    542895 Jul 25 07:16 input.tar.gz
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas 207842802 Jul 25 08:10 HITS.pool.root.1
[2025-07-25 08:11:13] -rw-------. 1 boincer umatlas    645120 Jul 25 08:11 result.tar.gz
08:11:15 (1575484): run_atlas exited; CPU time 24345.238939
08:11:15 (1575484): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN