Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:20:00 (12597): wrapper (7.7.26015): starting
07:20:00 (12597): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 07:20:00] Arguments: --nthreads 12
[2025-07-25 07:20:00] Threads: 12
[2025-07-25 07:20:00] Checking for CVMFS
[2025-07-25 07:20:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 07:20:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 07:20:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 07:20:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 07:20:00] 2.11.2.0 2981 109007 93576 148738 1 59 13933131 20275201 1 130560 0 36400936 99.970 9848028 10822 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 07:20:00] CVMFS is ok
[2025-07-25 07:20:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 07:20:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 07:20:00] Further information can be found at the LHC@home message board.
[2025-07-25 07:20:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 07:20:00] Checking for apptainer binary...
[2025-07-25 07:20:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 07:20:00] Running /usr/bin/apptainer --version
[2025-07-25 07:20:00] apptainer version 1.3.2-1.el7
[2025-07-25 07:20:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 07:20:01] c-205-30.aglt2.org
[2025-07-25 07:20:01] apptainer works
[2025-07-25 07:20:01] Set ATHENA_PROC_NUMBER=12
[2025-07-25 07:20:01] Set ATHENA_CORE_NUMBER=12
[2025-07-25 07:20:01] Starting ATLAS job with PandaID=6744951978
[2025-07-25 07:20:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 08:40:36]  *** The last 200 lines of the pilot log: ***
[2025-07-25 08:40:36]  mtime=0
[2025-07-25 08:40:36]  protocol_id=None
[2025-07-25 08:40:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-25 08:40:36]  replicas=None
[2025-07-25 08:40:36]  scope=mc23_13p6TeV
[2025-07-25 08:40:36]  status=None
[2025-07-25 08:40:36]  status_code=0
[2025-07-25 08:40:36]  storage_token=
[2025-07-25 08:40:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744951978/log.45743349._016194.job.log.tgz.1
[2025-07-25 08:40:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/4d/log.45743349._016194.job.log.tgz.1
[2025-07-25 08:40:36]  workdir=None
[2025-07-25 08:40:36] ]
[2025-07-25 08:40:36] 2025-07-25 12:39:54,600 | INFO     | transferring file log.45743349._016194.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744951978/log.45743349._016194.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 08:40:36] 2025-07-25 12:39:54,601 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744951978/log.45743349._016194.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._016194.job
[2025-07-25 08:40:36] 2025-07-25 12:39:54,623 | INFO     | adding to output.list: log.45743349._016194.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/4d/log.45743349._016194.job.log.tg
[2025-07-25 08:40:36] 2025-07-25 12:39:54,623 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 08:40:36] 2025-07-25 12:39:54,624 | INFO     | summary of transferred files:
[2025-07-25 08:40:36] 2025-07-25 12:39:54,624 | INFO     |  -- lfn=log.45743349._016194.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 08:40:36] 2025-07-25 12:39:54,624 | INFO     | stage-out finished correctly
[2025-07-25 08:40:36] 2025-07-25 12:39:54,641 | INFO     | monitor loop #358: job 0:6744951978 is in state 'finished'
[2025-07-25 08:40:36] 2025-07-25 12:39:54,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:40:36] 2025-07-25 12:39:57,145 | INFO     | monitor loop #359: job 0:6744951978 is in state 'finished'
[2025-07-25 08:40:36] 2025-07-25 12:39:57,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:40:36] 2025-07-25 12:39:57,612 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 08:40:36] 2025-07-25 12:39:58,167 | INFO     | job 6744951978 has state=finished
[2025-07-25 08:40:36] 2025-07-25 12:39:58,167 | INFO     | preparing for final server update for job 6744951978 in state='finished'
[2025-07-25 08:40:36] 2025-07-25 12:39:58,230 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-25 08:40:36] 2025-07-25 12:39:58,230 | INFO     | this job has now completed (state=finished)
[2025-07-25 08:40:36] 2025-07-25 12:39:58,231 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 08:40:36] 2025-07-25 12:39:58,231 | INFO     | log transfer has been attempted: DONE
[2025-07-25 08:40:36] 2025-07-25 12:39:58,231 | INFO     | job 6744951978 has finished - writing final server update
[2025-07-25 08:40:36] 2025-07-25 12:39:58,231 | INFO     | total number of processed events: 400 (read)
[2025-07-25 08:40:36] 2025-07-25 12:39:58,232 | INFO     | executing command: lscpu
[2025-07-25 08:40:36] 2025-07-25 12:39:58,256 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 08:40:36] 2025-07-25 12:39:59,648 | INFO     | monitor loop #360: job 0:6744951978 is in state 'finished'
[2025-07-25 08:40:36] 2025-07-25 12:39:59,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:40:36] 2025-07-25 12:40:02,158 | INFO     | monitor loop #361: job 0:6744951978 is in state 'finished'
[2025-07-25 08:40:36] 2025-07-25 12:40:02,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:40:36] 2025-07-25 12:40:03,096 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-25 08:40:36] 2025-07-25 12:40:03,100 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-25 08:40:36] 2025-07-25 12:40:03,102 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744951978/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 08:40:36] 2025-07-25 12:40:03,103 | INFO     | extracted standard info from prmon json
[2025-07-25 08:40:36] 2025-07-25 12:40:03,104 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 08:40:36] 2025-07-25 12:40:03,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 08:40:36] 2025-07-25 12:40:03,104 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 08:40:36] 2025-07-25 12:40:03,104 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 08:40:36] 2025-07-25 12:40:03,107 | INFO     | fitting pss+swap vs Time
[2025-07-25 08:40:36] 2025-07-25 12:40:03,107 | INFO     | sum of square deviations: 110960220.0
[2025-07-25 08:40:36] 2025-07-25 12:40:03,108 | INFO     | sum of deviations: -4842356656.000001
[2025-07-25 08:40:36] 2025-07-25 12:40:03,108 | INFO     | mean x: 1753444885.0
[2025-07-25 08:40:36] 2025-07-25 12:40:03,108 | INFO     | mean y: 2720365.563380282
[2025-07-25 08:40:36] 2025-07-25 12:40:03,108 | INFO     | -- intersect: 76523887228.86725
[2025-07-25 08:40:36] 2025-07-25 12:40:03,109 | INFO     | intersect: 76523887228.86725
[2025-07-25 08:40:36] 2025-07-25 12:40:03,109 | INFO     | chi2: 0.060731534912029136
[2025-07-25 08:40:36] 2025-07-25 12:40:03,109 | INFO     | -- intersect: 76523887228.86725
[2025-07-25 08:40:36] 2025-07-25 12:40:03,109 | INFO     | current memory leak: -43.64 B/s (using 71 data points, chi2=0.06)
[2025-07-25 08:40:36] 2025-07-25 12:40:03,110 | INFO     | could have reported an average CPU frequency of 2036 MHz (6 samples)
[2025-07-25 08:40:36] 2025-07-25 12:40:03,110 | INFO     | ..............................
[2025-07-25 08:40:36] 2025-07-25 12:40:03,110 | INFO     | . Timing measurements:
[2025-07-25 08:40:36] 2025-07-25 12:40:03,110 | INFO     | . get job = 0 s
[2025-07-25 08:40:36] 2025-07-25 12:40:03,110 | INFO     | . initial setup = 2 s
[2025-07-25 08:40:36] 2025-07-25 12:40:03,110 | INFO     | . payload setup = 9 s
[2025-07-25 08:40:36] 2025-07-25 12:40:03,110 | INFO     | . stage-in = 0 s
[2025-07-25 08:40:36] 2025-07-25 12:40:03,110 | INFO     | . payload execution = 4750 s
[2025-07-25 08:40:36] 2025-07-25 12:40:03,111 | INFO     | . stage-out = 0 s
[2025-07-25 08:40:36] 2025-07-25 12:40:03,111 | INFO     | . log creation = 0 s
[2025-07-25 08:40:36] 2025-07-25 12:40:03,111 | INFO     | ..............................
[2025-07-25 08:40:36] 2025-07-25 12:40:03,195 | INFO     | 
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | job summary report
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | --------------------------------------------------
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | PanDA job id: 6744951978
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | task id: 45743349
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | errors: (none)
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | pilot state: finished 
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | transexitcode: 0
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | exeerrorcode: 0
[2025-07-25 08:40:36] 2025-07-25 12:40:03,196 | INFO     | exeerrordiag: 
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | exitcode: 0
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | exitmsg: OK
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | cpuconsumptiontime: 52795 s
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | nevents: 400
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | neventsw: 0
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | pid: 23660
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | pgrp: 23660
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | corecount: 12
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | event service: False
[2025-07-25 08:40:36] 2025-07-25 12:40:03,197 | INFO     | sizes: {0: 2397473, 5: 2397735, 11: 2397791, 4763: 2424012, 4764: 2433010, 4767: 2433066, 4772: 2433388}
[2025-07-25 08:40:36] 2025-07-25 12:40:03,198 | INFO     | --------------------------------------------------
[2025-07-25 08:40:36] 2025-07-25 12:40:03,198 | INFO     | 
[2025-07-25 08:40:36] 2025-07-25 12:40:03,198 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 08:40:36] 2025-07-25 12:40:03,220 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,220 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,221 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,221 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,221 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,221 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,221 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,221 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,222 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,222 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,222 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,222 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,222 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,222 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,223 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,223 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 08:40:36] 2025-07-25 12:40:03,223 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,223 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 08:40:36] 2025-07-25 12:40:03,224 | INFO     | job 6744951978 has completed (purged errors)
[2025-07-25 08:40:36] 2025-07-25 12:40:03,224 | INFO     | overall cleanup function is called
[2025-07-25 08:40:36] 2025-07-25 12:40:04,232 | INFO     | --- collectZombieJob: --- 10, [23660]
[2025-07-25 08:40:36] 2025-07-25 12:40:04,232 | INFO     | zombie collector waiting for pid 23660
[2025-07-25 08:40:36] 2025-07-25 12:40:04,232 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 08:40:36] 2025-07-25 12:40:04,233 | INFO     | collected zombie processes
[2025-07-25 08:40:36] 2025-07-25 12:40:04,233 | INFO     | will attempt to kill all subprocesses of pid=23660
[2025-07-25 08:40:36] 2025-07-25 12:40:04,322 | INFO     | process IDs to be killed: [23660] (in reverse order)
[2025-07-25 08:40:36] 2025-07-25 12:40:04,511 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 08:40:36] 2025-07-25 12:40:04,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 08:40:36] 2025-07-25 12:40:04,515 | INFO     | did not find any defunct processes belonging to 23660
[2025-07-25 08:40:36] 2025-07-25 12:40:04,519 | INFO     | did not find any defunct processes belonging to 23660
[2025-07-25 08:40:36] 2025-07-25 12:40:04,519 | INFO     | ready for new job
[2025-07-25 08:40:36] 2025-07-25 12:40:04,519 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 08:40:36] 2025-07-25 12:40:04,520 | INFO     | ***************************************
[2025-07-25 08:40:36] 2025-07-25 12:40:04,521 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 08:40:36] 2025-07-25 12:40:04,521 | INFO     | ***************************************
[2025-07-25 08:40:36] 2025-07-25 12:40:04,521 | INFO     | 
[2025-07-25 08:40:36] 2025-07-25 12:40:04,521 | INFO     | architecture information:
[2025-07-25 08:40:36] 2025-07-25 12:40:04,522 | INFO     | executing command: cat /etc/os-release
[2025-07-25 08:40:36] 2025-07-25 12:40:04,536 | INFO     | cat /etc/os-release:
[2025-07-25 08:40:36] NAME="CentOS Linux"
[2025-07-25 08:40:36] VERSION="7 (Core)"
[2025-07-25 08:40:36] ID="centos"
[2025-07-25 08:40:36] ID_LIKE="rhel fedora"
[2025-07-25 08:40:36] VERSION_ID="7"
[2025-07-25 08:40:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 08:40:36] ANSI_COLOR="0;31"
[2025-07-25 08:40:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 08:40:36] HOME_URL="https://www.centos.org/"
[2025-07-25 08:40:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 08:40:36] 
[2025-07-25 08:40:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 08:40:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 08:40:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 08:40:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 08:40:36] 
[2025-07-25 08:40:36] 2025-07-25 12:40:04,537 | INFO     | ***************************************
[2025-07-25 08:40:36] 2025-07-25 12:40:05,039 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 08:40:36] 2025-07-25 12:40:05,055 | INFO     | sufficient remaining disk space (29521608704 B)
[2025-07-25 08:40:36] 2025-07-25 12:40:05,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 08:40:36] 2025-07-25 12:40:05,056 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 08:40:36] 2025-07-25 12:40:05,056 | INFO     | update_server=False
[2025-07-25 08:40:36] 2025-07-25 12:40:05,056 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 08:40:36] 2025-07-25 12:40:05,056 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:40:36] 2025-07-25 12:40:05,224 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 08:40:36] 2025-07-25 12:40:05,284 | INFO     | all payload control threads have been joined
[2025-07-25 08:40:36] 2025-07-25 12:40:05,671 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:40:36] 2025-07-25 12:40:05,672 | INFO     | aborting loop
[2025-07-25 08:40:36] 2025-07-25 12:40:05,893 | INFO     | all data control threads have been joined
[2025-07-25 08:40:36] 2025-07-25 12:40:06,062 | INFO     | [job] retrieve thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:06,062 | INFO     | [job] queue monitor thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:06,206 | INFO     | all job control threads have been joined
[2025-07-25 08:40:36] 2025-07-25 12:40:06,286 | INFO     | [payload] control thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:06,651 | INFO     | [job] validate thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:06,677 | INFO     | [job] job monitor thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:06,781 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:06,895 | INFO     | [payload] failed_post thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:06,898 | INFO     | [data] control thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:07,211 | INFO     | [job] control thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:07,229 | INFO     | [data] copytool_out thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:07,260 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:07,284 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:07,292 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:07,494 | INFO     | [data] copytool_in thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:07,659 | INFO     | [payload] validate_post thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:08,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 08:40:36] 2025-07-25 12:40:12,210 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 08:40:36] 2025-07-25 12:40:12,288 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140670119290688)>', '<ExcThread(monitor, started 140669683222272)>']
[2025-07-25 08:40:36] 2025-07-25 12:40:17,313 | INFO     | all workflow threads have been joined
[2025-07-25 08:40:36] 2025-07-25 12:40:17,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 08:40:36] 2025-07-25 12:40:17,322 | INFO     | traces error code: 0
[2025-07-25 08:40:36] 2025-07-25 12:40:17,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 08:40:36] 2025-07-25 12:40:35,948 | INFO     | PID=17204 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-25 08:40:36] 2025-07-25 12:40:35,949 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 08:40:36] 2025-07-25 12:40:35,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 08:40:36] 2025-07-25 12:40:35,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 08:40:36] 2025-07-25 12:40:35,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 08:40:36] 2025-07-25 12:40:35,949 | INFO     | [monitor] control thread has ended
[2025-07-25 08:40:36] 2025-07-25 12:40:36,051 [wrapper] ==== pilot stdout END ====
[2025-07-25 08:40:36] 2025-07-25 12:40:36,055 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 08:40:36] 2025-07-25 12:40:36,058 [wrapper] pilotpid: 17204
[2025-07-25 08:40:36] 2025-07-25 12:40:36,062 [wrapper] Pilot exit status: 0
[2025-07-25 08:40:36] 2025-07-25 12:40:36,077 [wrapper] pandaids: 6744951978
[2025-07-25 08:40:36] 2025-07-25 12:40:36,119 [wrapper] cleanup supervisor_pilot  7996 17205
[2025-07-25 08:40:36] 2025-07-25 12:40:36,122 [wrapper] Test setup, not cleaning
[2025-07-25 08:40:36] 2025-07-25 12:40:36,126 [wrapper] apfmon messages muted
[2025-07-25 08:40:36] 2025-07-25 12:40:36,130 [wrapper] ==== wrapper stdout END ====
[2025-07-25 08:40:36] 2025-07-25 12:40:36,134 [wrapper] ==== wrapper stderr END ====
[2025-07-25 08:40:36]  *** Error codes and diagnostics ***
[2025-07-25 08:40:36]     "exeErrorCode": 0,
[2025-07-25 08:40:36]     "exeErrorDiag": "",
[2025-07-25 08:40:36]     "pilotErrorCode": 0,
[2025-07-25 08:40:36]     "pilotErrorDiag": "",
[2025-07-25 08:40:36]  *** Listing of results directory ***
[2025-07-25 08:40:36] total 344972
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas    530466 Jul 25 00:28 pilot3.tar.gz
[2025-07-25 08:40:36] -rwx------ 1 boincer umatlas     36292 Jul 25 00:42 runpilot2-wrapper.sh
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 00:42 queuedata.json
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas       100 Jul 25 07:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 08:40:36] -rwxr-xr-x 1 boincer umatlas      7986 Jul 25 07:19 run_atlas
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas       105 Jul 25 07:19 job.xml
[2025-07-25 08:40:36] -rw-r--r-- 2 boincer umatlas 143605598 Jul 25 07:19 EVNT.45743347._000907.pool.root.1
[2025-07-25 08:40:36] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 07:20 start_atlas.sh
[2025-07-25 08:40:36] drwxrwx--x 2 boincer umatlas      4096 Jul 25 07:20 shared
[2025-07-25 08:40:36] -rw-r--r-- 2 boincer umatlas    542891 Jul 25 07:20 input.tar.gz
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas         0 Jul 25 07:20 boinc_lockfile
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas      2562 Jul 25 07:20 pandaJob.out
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas    979717 Jul 25 07:20 agis_schedconf.cvmfs.json
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas   1593052 Jul 25 07:20 agis_ddmendpoints.agis.ALL.json
[2025-07-25 08:40:36] drwx------ 4 boincer umatlas      4096 Jul 25 07:20 pilot3
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas      5868 Jul 25 08:36 init_data.xml
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas 204141685 Jul 25 08:39 HITS.45743349._016194.pool.root.1
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas       530 Jul 25 08:39 boinc_task_state.xml
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas      1048 Jul 25 08:39 memory_monitor_summary.json
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas    360044 Jul 25 08:39 log.45743349._016194.job.log.tgz.1
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas      7850 Jul 25 08:40 heartbeat.json
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas        27 Jul 25 08:40 wrapper_checkpoint.txt
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas      8192 Jul 25 08:40 boinc_mmap_file
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas       745 Jul 25 08:40 pilotlog.txt
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas        95 Jul 25 08:40 pilot_heartbeat.json
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas    458352 Jul 25 08:40 log.45743349._016194.job.log.1
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas       357 Jul 25 08:40 output.list
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas       620 Jul 25 08:40 runtime_log
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas    839680 Jul 25 08:40 result.tar.gz
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas      8662 Jul 25 08:40 runtime_log.err
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas       659 Jul 25 08:40 hb4NDmKRPz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm5TyKDm3JUtSo.diag
[2025-07-25 08:40:36] -rw-r--r-- 1 boincer umatlas     21739 Jul 25 08:40 stderr.txt
[2025-07-25 08:40:36] HITS file was successfully produced:
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas 204141685 Jul 25 08:39 shared/HITS.pool.root.1
[2025-07-25 08:40:36]  *** Contents of shared directory: ***
[2025-07-25 08:40:36] total 340968
[2025-07-25 08:40:36] -rw-r--r-- 2 boincer umatlas 143605598 Jul 25 07:19 ATLAS.root_0
[2025-07-25 08:40:36] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 07:20 start_atlas.sh
[2025-07-25 08:40:36] -rw-r--r-- 2 boincer umatlas    542891 Jul 25 07:20 input.tar.gz
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas 204141685 Jul 25 08:39 HITS.pool.root.1
[2025-07-25 08:40:36] -rw------- 1 boincer umatlas    839680 Jul 25 08:40 result.tar.gz
08:40:38 (12597): run_atlas exited; CPU time 52768.294149
08:40:38 (12597): called boinc_finish(0)

</stderr_txt>
]]>

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