Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:57:11 (3778815): wrapper (7.7.26015): starting
07:57:11 (3778815): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 07:57:11] Arguments: --nthreads 8
[2025-07-25 07:57:11] Threads: 8
[2025-07-25 07:57:11] Checking for CVMFS
[2025-07-25 07:57:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 07:57:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 07:57:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 07:57:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 07:57:11] 2.13.0.0 107782 24321 223972 148740 3 638 29222084 32503809 31066 16776704 0 238016612 99.501 325708678 29199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 07:57:11] CVMFS is ok
[2025-07-25 07:57:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 07:57:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 07:57:11] Further information can be found at the LHC@home message board.
[2025-07-25 07:57:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 07:57:11] Checking for apptainer binary...
[2025-07-25 07:57:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 07:57:11] Running /usr/bin/apptainer --version
[2025-07-25 07:57:11] apptainer version 1.4.1-1.el9
[2025-07-25 07:57:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 07:57:11] c8-7-2.aglt2.org
[2025-07-25 07:57:11] apptainer works
[2025-07-25 07:57:11] Set ATHENA_PROC_NUMBER=8
[2025-07-25 07:57:11] Set ATHENA_CORE_NUMBER=8
[2025-07-25 07:57:11] Starting ATLAS job with PandaID=6744951958
[2025-07-25 07:57:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 09:18:37]  *** The last 200 lines of the pilot log: ***
[2025-07-25 09:18:37]  status_code=0
[2025-07-25 09:18:37]  storage_token=
[2025-07-25 09:18:37]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6744951958/log.45743349._016174.job.log.tgz.1
[2025-07-25 09:18:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/08/log.45743349._016174.job.log.tgz.1
[2025-07-25 09:18:37]  workdir=None
[2025-07-25 09:18:37] ]
[2025-07-25 09:18:37] 2025-07-25 13:17:50,570 | INFO     | transferring file log.45743349._016174.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6744951958/log.45743349._016174.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 09:18:37] 2025-07-25 13:17:50,570 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6744951958/log.45743349._016174.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._016174.job
[2025-07-25 09:18:37] 2025-07-25 13:17:50,638 | INFO     | adding to output.list: log.45743349._016174.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/08/log.45743349._016174.job.log.tg
[2025-07-25 09:18:37] 2025-07-25 13:17:50,638 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 09:18:37] 2025-07-25 13:17:50,638 | INFO     | summary of transferred files:
[2025-07-25 09:18:37] 2025-07-25 13:17:50,638 | INFO     |  -- lfn=log.45743349._016174.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 09:18:37] 2025-07-25 13:17:50,639 | INFO     | stage-out finished correctly
[2025-07-25 09:18:37] 2025-07-25 13:17:51,656 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 09:18:37] 2025-07-25 13:17:51,757 | INFO     | monitor loop #330: job 0:6744951958 is in state 'finished'
[2025-07-25 09:18:37] 2025-07-25 13:17:51,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 09:18:37] 2025-07-25 13:17:51,789 | INFO     | PID=3786888 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-25 09:18:37] 2025-07-25 13:17:51,789 | INFO     | .. there are 47 such processes running
[2025-07-25 09:18:37] 2025-07-25 13:17:51,888 | INFO     | job 6744951958 has state=finished
[2025-07-25 09:18:37] 2025-07-25 13:17:51,888 | INFO     | preparing for final server update for job 6744951958 in state='finished'
[2025-07-25 09:18:37] 2025-07-25 13:17:51,888 | INFO     | this job has now completed (state=finished)
[2025-07-25 09:18:37] 2025-07-25 13:17:51,889 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 09:18:37] 2025-07-25 13:17:51,889 | INFO     | log transfer has been attempted: DONE
[2025-07-25 09:18:37] 2025-07-25 13:17:51,889 | INFO     | job 6744951958 has finished - writing final server update
[2025-07-25 09:18:37] 2025-07-25 13:17:51,889 | INFO     | total number of processed events: 400 (read)
[2025-07-25 09:18:37] 2025-07-25 13:17:51,905 | INFO     | executing command: lscpu
[2025-07-25 09:18:37] 2025-07-25 13:17:52,042 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 09:18:37] 2025-07-25 13:17:54,265 | INFO     | monitor loop #331: job 0:6744951958 is in state 'finished'
[2025-07-25 09:18:37] 2025-07-25 13:17:54,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 09:18:37] 2025-07-25 13:17:56,772 | INFO     | monitor loop #332: job 0:6744951958 is in state 'finished'
[2025-07-25 09:18:37] 2025-07-25 13:17:56,772 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 09:18:37] 2025-07-25 13:17:58,821 | INFO     | 4836s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-25 09:18:37] 2025-07-25 13:17:59,282 | INFO     | monitor loop #333: job 0:6744951958 is in state 'finished'
[2025-07-25 09:18:37] 2025-07-25 13:17:59,282 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 09:18:37] 2025-07-25 13:18:01,786 | INFO     | monitor loop #334: job 0:6744951958 is in state 'finished'
[2025-07-25 09:18:37] 2025-07-25 13:18:01,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 09:18:37] 2025-07-25 13:18:03,516 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 09:18:37] 2025-07-25 13:18:03,525 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3745.327835937498
[2025-07-25 09:18:37] 2025-07-25 13:18:03,539 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6744951958/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 09:18:37] 2025-07-25 13:18:03,540 | INFO     | extracted standard info from prmon json
[2025-07-25 09:18:37] 2025-07-25 13:18:03,540 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 09:18:37] 2025-07-25 13:18:03,540 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 09:18:37] 2025-07-25 13:18:03,541 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 09:18:37] 2025-07-25 13:18:03,541 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | fitting pss+swap vs Time
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | sum of square deviations: 115715658.0
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | sum of deviations: -6130864993.499999
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | mean x: 1753447144.5
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | mean y: 2215635.013888889
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | -- intersect: 92903625020.48862
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | intersect: 92903625020.48862
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | chi2: 0.13519187393475596
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | -- intersect: 92903625020.48862
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | current memory leak: -52.98 B/s (using 72 data points, chi2=0.14)
[2025-07-25 09:18:37] 2025-07-25 13:18:03,542 | INFO     | could have reported an average CPU frequency of 3744 MHz (6 samples)
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | ..............................
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | . Timing measurements:
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | . get job = 0 s
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | . initial setup = 2 s
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | . payload setup = 7 s
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | . stage-in = 0 s
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | . payload execution = 4797 s
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | . stage-out = 0 s
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | . log creation = 0 s
[2025-07-25 09:18:37] 2025-07-25 13:18:03,543 | INFO     | ..............................
[2025-07-25 09:18:37] 2025-07-25 13:18:03,589 | INFO     | 
[2025-07-25 09:18:37] 2025-07-25 13:18:03,589 | INFO     | job summary report
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | --------------------------------------------------
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | PanDA job id: 6744951958
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | task id: 45743349
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | errors: (none)
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | pilot state: finished 
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | transexitcode: 0
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | exeerrorcode: 0
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | exeerrordiag: 
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | exitcode: 0
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | exitmsg: OK
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | cpuconsumptiontime: 28524 s
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | nevents: 400
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | neventsw: 0
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | pid: 3793890
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | pgrp: 3793890
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | corecount: 8
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | event service: False
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | sizes: {0: 2397471, 6: 2397733, 11: 2397761, 4808: 2424057, 4810: 2433055, 4811: 2433111, 4823: 2433433}
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | --------------------------------------------------
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | 
[2025-07-25 09:18:37] 2025-07-25 13:18:03,590 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-25 09:18:37] 2025-07-25 13:18:03,658 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | job 6744951958 has completed (purged errors)
[2025-07-25 09:18:37] 2025-07-25 13:18:03,659 | INFO     | overall cleanup function is called
[2025-07-25 09:18:37] 2025-07-25 13:18:04,676 | INFO     | --- collectZombieJob: --- 10, [3793890]
[2025-07-25 09:18:37] 2025-07-25 13:18:04,676 | INFO     | zombie collector waiting for pid 3793890
[2025-07-25 09:18:37] 2025-07-25 13:18:04,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 09:18:37] 2025-07-25 13:18:04,676 | INFO     | collected zombie processes
[2025-07-25 09:18:37] 2025-07-25 13:18:04,677 | INFO     | will attempt to kill all subprocesses of pid=3793890
[2025-07-25 09:18:37] 2025-07-25 13:18:05,129 | INFO     | process IDs to be killed: [3793890] (in reverse order)
[2025-07-25 09:18:37] 2025-07-25 13:18:05,311 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 09:18:37] 2025-07-25 13:18:05,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 09:18:37] 2025-07-25 13:18:05,354 | INFO     | did not find any defunct processes belonging to 3793890
[2025-07-25 09:18:37] 2025-07-25 13:18:05,392 | INFO     | did not find any defunct processes belonging to 3793890
[2025-07-25 09:18:37] 2025-07-25 13:18:05,393 | INFO     | ready for new job
[2025-07-25 09:18:37] 2025-07-25 13:18:05,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 09:18:37] 2025-07-25 13:18:05,395 | INFO     | ***************************************
[2025-07-25 09:18:37] 2025-07-25 13:18:05,395 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 09:18:37] 2025-07-25 13:18:05,395 | INFO     | ***************************************
[2025-07-25 09:18:37] 2025-07-25 13:18:05,395 | INFO     | 
[2025-07-25 09:18:37] 2025-07-25 13:18:05,400 | INFO     | architecture information:
[2025-07-25 09:18:37] 2025-07-25 13:18:05,400 | INFO     | executing command: cat /etc/os-release
[2025-07-25 09:18:37] 2025-07-25 13:18:05,443 | INFO     | cat /etc/os-release:
[2025-07-25 09:18:37] NAME="CentOS Linux"
[2025-07-25 09:18:37] VERSION="7 (Core)"
[2025-07-25 09:18:37] ID="centos"
[2025-07-25 09:18:37] ID_LIKE="rhel fedora"
[2025-07-25 09:18:37] VERSION_ID="7"
[2025-07-25 09:18:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 09:18:37] ANSI_COLOR="0;31"
[2025-07-25 09:18:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 09:18:37] HOME_URL="https://www.centos.org/"
[2025-07-25 09:18:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 09:18:37] 
[2025-07-25 09:18:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 09:18:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 09:18:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 09:18:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 09:18:37] 
[2025-07-25 09:18:37] 2025-07-25 13:18:05,444 | INFO     | ***************************************
[2025-07-25 09:18:37] 2025-07-25 13:18:05,947 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-25 09:18:37] 2025-07-25 13:18:05,962 | INFO     | sufficient remaining disk space (94989451264 B)
[2025-07-25 09:18:37] 2025-07-25 13:18:05,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 09:18:37] 2025-07-25 13:18:05,962 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 09:18:37] 2025-07-25 13:18:05,962 | INFO     | update_server=False
[2025-07-25 09:18:37] 2025-07-25 13:18:05,962 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 09:18:37] 2025-07-25 13:18:05,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 09:18:37] 2025-07-25 13:18:05,964 | INFO     | aborting loop
[2025-07-25 09:18:37] 2025-07-25 13:18:06,240 | INFO     | all data control threads have been joined
[2025-07-25 09:18:37] 2025-07-25 13:18:06,247 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 09:18:37] 2025-07-25 13:18:06,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 09:18:37] 2025-07-25 13:18:06,926 | INFO     | all job control threads have been joined
[2025-07-25 09:18:37] 2025-07-25 13:18:06,967 | INFO     | [job] retrieve thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:06,968 | INFO     | [job] job monitor thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:07,067 | INFO     | [payload] failed_post thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:07,246 | INFO     | [data] control thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:07,248 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:07,304 | INFO     | all payload control threads have been joined
[2025-07-25 09:18:37] 2025-07-25 13:18:07,764 | INFO     | [payload] validate_post thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:07,931 | INFO     | [job] control thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:07,940 | INFO     | [data] copytool_in thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:07,976 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:08,104 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:08,253 | INFO     | [data] copytool_out thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:08,310 | INFO     | [payload] control thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:08,440 | INFO     | [job] validate thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:08,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 09:18:37] 2025-07-25 13:18:09,608 | INFO     | [job] queue monitor thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:10,797 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:16,479 | INFO     | job.realtimelogging is not enabled
[2025-07-25 09:18:37] 2025-07-25 13:18:17,484 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 09:18:37] 2025-07-25 13:18:18,308 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140101529667392)>', '<ExcThread(monitor, started 140100826560256)>']
[2025-07-25 09:18:37] 2025-07-25 13:18:23,334 | INFO     | all workflow threads have been joined
[2025-07-25 09:18:37] 2025-07-25 13:18:23,334 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 09:18:37] 2025-07-25 13:18:23,335 | INFO     | traces error code: 0
[2025-07-25 09:18:37] 2025-07-25 13:18:23,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 09:18:37] 2025-07-25 13:18:36,442 | INFO     | PID=3786888 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 09:18:37] 2025-07-25 13:18:36,442 | INFO     | .. there are 46 such processes running
[2025-07-25 09:18:37] 2025-07-25 13:18:36,443 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 09:18:37] 2025-07-25 13:18:36,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 09:18:37] 2025-07-25 13:18:36,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 09:18:37] 2025-07-25 13:18:36,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 09:18:37] 2025-07-25 13:18:36,443 | INFO     | [monitor] control thread has ended
[2025-07-25 09:18:37] 2025-07-25 13:18:36,574 [wrapper] ==== pilot stdout END ====
[2025-07-25 09:18:37] 2025-07-25 13:18:36,577 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 09:18:37] 2025-07-25 13:18:36,580 [wrapper] pilotpid: 3786888
[2025-07-25 09:18:37] 2025-07-25 13:18:36,584 [wrapper] Pilot exit status: 0
[2025-07-25 09:18:37] 2025-07-25 13:18:36,613 [wrapper] pandaids: 6744951958
[2025-07-25 09:18:37] 2025-07-25 13:18:36,749 [wrapper] cleanup supervisor_pilot  401803 3786889
[2025-07-25 09:18:37] 2025-07-25 13:18:36,761 [wrapper] Test setup, not cleaning
[2025-07-25 09:18:37] 2025-07-25 13:18:36,772 [wrapper] apfmon messages muted
[2025-07-25 09:18:37] 2025-07-25 13:18:36,775 [wrapper] ==== wrapper stdout END ====
[2025-07-25 09:18:37] 2025-07-25 13:18:36,787 [wrapper] ==== wrapper stderr END ====
[2025-07-25 09:18:37]  *** Error codes and diagnostics ***
[2025-07-25 09:18:37]     "exeErrorCode": 0,
[2025-07-25 09:18:37]     "exeErrorDiag": "",
[2025-07-25 09:18:37]     "pilotErrorCode": 0,
[2025-07-25 09:18:37]     "pilotErrorDiag": "",
[2025-07-25 09:18:37]  *** Listing of results directory ***
[2025-07-25 09:18:37] total 346132
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 00:28 pilot3.tar.gz
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 00:41 queuedata.json
[2025-07-25 09:18:37] -rwx------. 1 boincer umatlas     36292 Jul 25 00:42 runpilot2-wrapper.sh
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas       100 Jul 25 07:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 09:18:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 07:57 run_atlas
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas       105 Jul 25 07:57 job.xml
[2025-07-25 09:18:37] -rw-r--r--. 2 boincer umatlas 142263761 Jul 25 07:57 EVNT.45743347._000906.pool.root.1
[2025-07-25 09:18:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 07:57 start_atlas.sh
[2025-07-25 09:18:37] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 07:57 shared
[2025-07-25 09:18:37] -rw-r--r--. 2 boincer umatlas    542888 Jul 25 07:57 input.tar.gz
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas         0 Jul 25 07:57 boinc_lockfile
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas      2561 Jul 25 07:57 pandaJob.out
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas    979317 Jul 25 07:57 agis_schedconf.cvmfs.json
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas   1593052 Jul 25 07:57 agis_ddmendpoints.agis.ALL.json
[2025-07-25 09:18:37] drwx------. 4 boincer umatlas      4096 Jul 25 07:57 pilot3
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas      7159 Jul 25 09:10 init_data.xml
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas 206778675 Jul 25 09:17 HITS.45743349._016174.pool.root.1
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas       529 Jul 25 09:17 boinc_task_state.xml
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas      1043 Jul 25 09:17 memory_monitor_summary.json
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas    295219 Jul 25 09:17 log.45743349._016174.job.log.tgz.1
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas      7791 Jul 25 09:18 heartbeat.json
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 09:18 boinc_mmap_file
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas        27 Jul 25 09:18 wrapper_checkpoint.txt
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas       823 Jul 25 09:18 pilotlog.txt
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas        95 Jul 25 09:18 pilot_heartbeat.json
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas    463028 Jul 25 09:18 log.45743349._016174.job.log.1
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas       357 Jul 25 09:18 output.list
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas       620 Jul 25 09:18 runtime_log
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas    778240 Jul 25 09:18 result.tar.gz
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas      8650 Jul 25 09:18 runtime_log.err
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas       653 Jul 25 09:18 H7ZNDmKRPz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmnTyKDmUlribn.diag
[2025-07-25 09:18:37] -rw-r--r--. 1 boincer umatlas     22231 Jul 25 09:18 stderr.txt
[2025-07-25 09:18:37] HITS file was successfully produced:
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas 206778675 Jul 25 09:17 shared/HITS.pool.root.1
[2025-07-25 09:18:37]  *** Contents of shared directory: ***
[2025-07-25 09:18:37] total 342180
[2025-07-25 09:18:37] -rw-r--r--. 2 boincer umatlas 142263761 Jul 25 07:57 ATLAS.root_0
[2025-07-25 09:18:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 07:57 start_atlas.sh
[2025-07-25 09:18:37] -rw-r--r--. 2 boincer umatlas    542888 Jul 25 07:57 input.tar.gz
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas 206778675 Jul 25 09:17 HITS.pool.root.1
[2025-07-25 09:18:37] -rw-------. 1 boincer umatlas    778240 Jul 25 09:18 result.tar.gz
09:18:38 (3778815): run_atlas exited; CPU time 28661.549360
09:18:38 (3778815): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN