Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:12:33 (2300): wrapper (7.7.26015): starting
07:12:33 (2300): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 07:12:33] Arguments: --nthreads 8
[2025-07-25 07:12:33] Threads: 8
[2025-07-25 07:12:33] Checking for CVMFS
[2025-07-25 07:12:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 07:12:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 07:12:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 07:12:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 07:12:33] 2.11.2.0 3213 513983 243976 148738 0 188 19399609 20275200 917 130560 0 173453243 99.988 22435607 19660 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 07:12:33] CVMFS is ok
[2025-07-25 07:12:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 07:12:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 07:12:33] Further information can be found at the LHC@home message board.
[2025-07-25 07:12:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 07:12:33] Checking for apptainer binary...
[2025-07-25 07:12:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 07:12:33] Running /usr/bin/apptainer --version
[2025-07-25 07:12:33] apptainer version 1.3.2-1.el7
[2025-07-25 07:12:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 07:12:34] c-205-38.aglt2.org
[2025-07-25 07:12:34] apptainer works
[2025-07-25 07:12:34] Set ATHENA_PROC_NUMBER=8
[2025-07-25 07:12:34] Set ATHENA_CORE_NUMBER=8
[2025-07-25 07:12:34] Starting ATLAS job with PandaID=6742061398
[2025-07-25 07:12:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 08:27:13]  *** The last 200 lines of the pilot log: ***
[2025-07-25 08:27:13]  protocol_id=None
[2025-07-25 08:27:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-25 08:27:13]  replicas=None
[2025-07-25 08:27:13]  scope=mc23_13p6TeV
[2025-07-25 08:27:13]  status=None
[2025-07-25 08:27:13]  status_code=0
[2025-07-25 08:27:13]  storage_token=
[2025-07-25 08:27:13]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6742061398/log.45697523._005149.job.log.tgz.1
[2025-07-25 08:27:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/88/log.45697523._005149.job.log.tgz.1
[2025-07-25 08:27:13]  workdir=None
[2025-07-25 08:27:13] ]
[2025-07-25 08:27:13] 2025-07-25 12:26:34,776 | INFO     | transferring file log.45697523._005149.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6742061398/log.45697523._005149.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 08:27:13] 2025-07-25 12:26:34,776 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6742061398/log.45697523._005149.job.log.tgz.1 /tmp/boinchome/slots/1/log.45697523._005149.job
[2025-07-25 08:27:13] 2025-07-25 12:26:34,793 | INFO     | adding to output.list: log.45697523._005149.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/88/log.45697523._005149.job.log.tg
[2025-07-25 08:27:13] 2025-07-25 12:26:34,794 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 08:27:13] 2025-07-25 12:26:34,794 | INFO     | summary of transferred files:
[2025-07-25 08:27:13] 2025-07-25 12:26:34,794 | INFO     |  -- lfn=log.45697523._005149.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 08:27:13] 2025-07-25 12:26:34,794 | INFO     | stage-out finished correctly
[2025-07-25 08:27:13] 2025-07-25 12:26:35,434 | INFO     | monitor loop #333: job 0:6742061398 is in state 'finished'
[2025-07-25 08:27:13] 2025-07-25 12:26:35,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:27:13] 2025-07-25 12:26:37,936 | INFO     | monitor loop #334: job 0:6742061398 is in state 'finished'
[2025-07-25 08:27:13] 2025-07-25 12:26:37,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:27:13] 2025-07-25 12:26:38,319 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 08:27:13] 2025-07-25 12:26:38,404 | INFO     | job 6742061398 has state=finished
[2025-07-25 08:27:13] 2025-07-25 12:26:38,404 | INFO     | preparing for final server update for job 6742061398 in state='finished'
[2025-07-25 08:27:13] 2025-07-25 12:26:38,405 | INFO     | this job has now completed (state=finished)
[2025-07-25 08:27:13] 2025-07-25 12:26:38,405 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 08:27:13] 2025-07-25 12:26:38,405 | INFO     | log transfer has been attempted: DONE
[2025-07-25 08:27:13] 2025-07-25 12:26:38,405 | INFO     | job 6742061398 has finished - writing final server update
[2025-07-25 08:27:13] 2025-07-25 12:26:38,405 | INFO     | total number of processed events: 400 (read)
[2025-07-25 08:27:13] 2025-07-25 12:26:38,406 | INFO     | executing command: lscpu
[2025-07-25 08:27:13] 2025-07-25 12:26:38,434 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 08:27:13] 2025-07-25 12:26:39,006 | INFO     | PID=5964 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-25 08:27:13] 2025-07-25 12:26:39,007 | INFO     | .. there are 2 such processes running
[2025-07-25 08:27:13] 2025-07-25 12:26:40,439 | INFO     | monitor loop #335: job 0:6742061398 is in state 'finished'
[2025-07-25 08:27:13] 2025-07-25 12:26:40,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:27:13] 2025-07-25 12:26:40,780 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 08:27:13] 2025-07-25 12:26:40,784 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2705.163125
[2025-07-25 08:27:13] 2025-07-25 12:26:40,787 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6742061398/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 08:27:13] 2025-07-25 12:26:40,787 | INFO     | extracted standard info from prmon json
[2025-07-25 08:27:13] 2025-07-25 12:26:40,787 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 08:27:13] 2025-07-25 12:26:40,787 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 08:27:13] 2025-07-25 12:26:40,788 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 08:27:13] 2025-07-25 12:26:40,788 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | fitting pss+swap vs Time
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | sum of square deviations: 89127252.5
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | sum of deviations: -2950476853.0
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | mean x: 1753444269.5
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | mean y: 2605710.4545454546
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | -- intersect: 58048787827.25708
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | intersect: 58048787827.25708
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | chi2: 0.017376143924871062
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | -- intersect: 58048787827.25708
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | current memory leak: -33.10 B/s (using 66 data points, chi2=0.02)
[2025-07-25 08:27:13] 2025-07-25 12:26:40,789 | INFO     | could have reported an average CPU frequency of 3018 MHz (6 samples)
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | ..............................
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | . Timing measurements:
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | . get job = 0 s
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | . initial setup = 2 s
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | . payload setup = 4 s
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | . stage-in = 0 s
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | . payload execution = 4413 s
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | . stage-out = 0 s
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | . log creation = 0 s
[2025-07-25 08:27:13] 2025-07-25 12:26:40,790 | INFO     | ..............................
[2025-07-25 08:27:13] 2025-07-25 12:26:41,262 | INFO     | 
[2025-07-25 08:27:13] 2025-07-25 12:26:41,262 | INFO     | job summary report
[2025-07-25 08:27:13] 2025-07-25 12:26:41,262 | INFO     | --------------------------------------------------
[2025-07-25 08:27:13] 2025-07-25 12:26:41,262 | INFO     | PanDA job id: 6742061398
[2025-07-25 08:27:13] 2025-07-25 12:26:41,262 | INFO     | task id: 45697523
[2025-07-25 08:27:13] 2025-07-25 12:26:41,263 | INFO     | errors: (none)
[2025-07-25 08:27:13] 2025-07-25 12:26:41,263 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 08:27:13] 2025-07-25 12:26:41,263 | INFO     | pilot state: finished 
[2025-07-25 08:27:13] 2025-07-25 12:26:41,263 | INFO     | transexitcode: 0
[2025-07-25 08:27:13] 2025-07-25 12:26:41,263 | INFO     | exeerrorcode: 0
[2025-07-25 08:27:13] 2025-07-25 12:26:41,263 | INFO     | exeerrordiag: 
[2025-07-25 08:27:13] 2025-07-25 12:26:41,263 | INFO     | exitcode: 0
[2025-07-25 08:27:13] 2025-07-25 12:26:41,263 | INFO     | exitmsg: OK
[2025-07-25 08:27:13] 2025-07-25 12:26:41,263 | INFO     | cpuconsumptiontime: 33082 s
[2025-07-25 08:27:13] 2025-07-25 12:26:41,264 | INFO     | nevents: 400
[2025-07-25 08:27:13] 2025-07-25 12:26:41,264 | INFO     | neventsw: 0
[2025-07-25 08:27:13] 2025-07-25 12:26:41,264 | INFO     | pid: 12431
[2025-07-25 08:27:13] 2025-07-25 12:26:41,264 | INFO     | pgrp: 12431
[2025-07-25 08:27:13] 2025-07-25 12:26:41,264 | INFO     | corecount: 8
[2025-07-25 08:27:13] 2025-07-25 12:26:41,264 | INFO     | event service: False
[2025-07-25 08:27:13] 2025-07-25 12:26:41,264 | INFO     | sizes: {0: 2397563, 3: 2397825, 11: 2397853, 4418: 2424075, 4420: 2433073, 4424: 2433129, 4426: 2433451}
[2025-07-25 08:27:13] 2025-07-25 12:26:41,264 | INFO     | --------------------------------------------------
[2025-07-25 08:27:13] 2025-07-25 12:26:41,264 | INFO     | 
[2025-07-25 08:27:13] 2025-07-25 12:26:41,265 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-25 08:27:13] 2025-07-25 12:26:41,284 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,285 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,285 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,285 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,285 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,285 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,286 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,287 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 08:27:13] 2025-07-25 12:26:41,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,287 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 08:27:13] 2025-07-25 12:26:41,287 | INFO     | job 6742061398 has completed (purged errors)
[2025-07-25 08:27:13] 2025-07-25 12:26:41,287 | INFO     | overall cleanup function is called
[2025-07-25 08:27:13] 2025-07-25 12:26:42,295 | INFO     | --- collectZombieJob: --- 10, [12431]
[2025-07-25 08:27:13] 2025-07-25 12:26:42,295 | INFO     | zombie collector waiting for pid 12431
[2025-07-25 08:27:13] 2025-07-25 12:26:42,295 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 08:27:13] 2025-07-25 12:26:42,296 | INFO     | collected zombie processes
[2025-07-25 08:27:13] 2025-07-25 12:26:42,296 | INFO     | will attempt to kill all subprocesses of pid=12431
[2025-07-25 08:27:13] 2025-07-25 12:26:42,389 | INFO     | process IDs to be killed: [12431] (in reverse order)
[2025-07-25 08:27:13] 2025-07-25 12:26:42,421 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 08:27:13] 2025-07-25 12:26:42,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 08:27:13] 2025-07-25 12:26:42,424 | INFO     | did not find any defunct processes belonging to 12431
[2025-07-25 08:27:13] 2025-07-25 12:26:42,426 | INFO     | did not find any defunct processes belonging to 12431
[2025-07-25 08:27:13] 2025-07-25 12:26:42,427 | INFO     | ready for new job
[2025-07-25 08:27:13] 2025-07-25 12:26:42,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 08:27:13] 2025-07-25 12:26:42,428 | INFO     | ***************************************
[2025-07-25 08:27:13] 2025-07-25 12:26:42,428 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 08:27:13] 2025-07-25 12:26:42,428 | INFO     | ***************************************
[2025-07-25 08:27:13] 2025-07-25 12:26:42,429 | INFO     | 
[2025-07-25 08:27:13] 2025-07-25 12:26:42,430 | INFO     | architecture information:
[2025-07-25 08:27:13] 2025-07-25 12:26:42,430 | INFO     | executing command: cat /etc/os-release
[2025-07-25 08:27:13] 2025-07-25 12:26:42,440 | INFO     | cat /etc/os-release:
[2025-07-25 08:27:13] NAME="CentOS Linux"
[2025-07-25 08:27:13] VERSION="7 (Core)"
[2025-07-25 08:27:13] ID="centos"
[2025-07-25 08:27:13] ID_LIKE="rhel fedora"
[2025-07-25 08:27:13] VERSION_ID="7"
[2025-07-25 08:27:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 08:27:13] ANSI_COLOR="0;31"
[2025-07-25 08:27:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 08:27:13] HOME_URL="https://www.centos.org/"
[2025-07-25 08:27:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 08:27:13] 
[2025-07-25 08:27:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 08:27:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 08:27:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 08:27:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 08:27:13] 
[2025-07-25 08:27:13] 2025-07-25 12:26:42,441 | INFO     | ***************************************
[2025-07-25 08:27:13] 2025-07-25 12:26:42,944 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-25 08:27:13] 2025-07-25 12:26:42,960 | INFO     | sufficient remaining disk space (32621199360 B)
[2025-07-25 08:27:13] 2025-07-25 12:26:42,961 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 08:27:13] 2025-07-25 12:26:42,961 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 08:27:13] 2025-07-25 12:26:42,961 | INFO     | update_server=False
[2025-07-25 08:27:13] 2025-07-25 12:26:42,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 08:27:13] 2025-07-25 12:26:42,961 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 08:27:13] 2025-07-25 12:26:43,210 | INFO     | all data control threads have been joined
[2025-07-25 08:27:13] 2025-07-25 12:26:43,230 | INFO     | all job control threads have been joined
[2025-07-25 08:27:13] 2025-07-25 12:26:43,731 | INFO     | all payload control threads have been joined
[2025-07-25 08:27:13] 2025-07-25 12:26:43,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:27:13] 2025-07-25 12:26:43,948 | INFO     | aborting loop
[2025-07-25 08:27:13] 2025-07-25 12:26:43,967 | INFO     | [job] retrieve thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:43,971 | INFO     | [job] validate thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:44,117 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:44,207 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:44,216 | INFO     | [data] control thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:44,235 | INFO     | [job] control thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:44,384 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:44,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 08:27:13] 2025-07-25 12:26:44,736 | INFO     | [payload] control thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:44,898 | INFO     | [payload] validate_post thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:44,954 | INFO     | [job] job monitor thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:44,967 | INFO     | [data] copytool_out thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:45,197 | INFO     | [payload] failed_post thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:45,344 | INFO     | [data] copytool_in thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:45,846 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:27:13] 2025-07-25 12:26:46,851 | INFO     | [job] queue monitor thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:48,415 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:53,588 | INFO     | job.realtimelogging is not enabled
[2025-07-25 08:27:13] 2025-07-25 12:26:54,594 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 08:27:13] 2025-07-25 12:26:54,686 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139926641534784)>', '<ExcThread(monitor, started 139926422841088)>']
[2025-07-25 08:27:13] 2025-07-25 12:26:59,704 | INFO     | all workflow threads have been joined
[2025-07-25 08:27:13] 2025-07-25 12:26:59,704 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 08:27:13] 2025-07-25 12:26:59,704 | INFO     | traces error code: 0
[2025-07-25 08:27:13] 2025-07-25 12:26:59,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 08:27:13] 2025-07-25 12:27:13,201 | INFO     | PID=5964 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-25 08:27:13] 2025-07-25 12:27:13,202 | INFO     | .. there are 2 such processes running
[2025-07-25 08:27:13] 2025-07-25 12:27:13,202 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 08:27:13] 2025-07-25 12:27:13,202 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 08:27:13] 2025-07-25 12:27:13,202 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 08:27:13] 2025-07-25 12:27:13,202 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 08:27:13] 2025-07-25 12:27:13,202 | INFO     | [monitor] control thread has ended
[2025-07-25 08:27:13] 2025-07-25 12:27:13,295 [wrapper] ==== pilot stdout END ====
[2025-07-25 08:27:13] 2025-07-25 12:27:13,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 08:27:13] 2025-07-25 12:27:13,301 [wrapper] pilotpid: 5964
[2025-07-25 08:27:13] 2025-07-25 12:27:13,303 [wrapper] Pilot exit status: 0
[2025-07-25 08:27:13] 2025-07-25 12:27:13,314 [wrapper] pandaids: 6742061398
[2025-07-25 08:27:13] 2025-07-25 12:27:13,342 [wrapper] cleanup supervisor_pilot 24037 5965
[2025-07-25 08:27:13] 2025-07-25 12:27:13,345 [wrapper] Test setup, not cleaning
[2025-07-25 08:27:13] 2025-07-25 12:27:13,348 [wrapper] apfmon messages muted
[2025-07-25 08:27:13] 2025-07-25 12:27:13,350 [wrapper] ==== wrapper stdout END ====
[2025-07-25 08:27:13] 2025-07-25 12:27:13,352 [wrapper] ==== wrapper stderr END ====
[2025-07-25 08:27:13]  *** Error codes and diagnostics ***
[2025-07-25 08:27:13]     "exeErrorCode": 0,
[2025-07-25 08:27:13]     "exeErrorDiag": "",
[2025-07-25 08:27:13]     "pilotErrorCode": 0,
[2025-07-25 08:27:13]     "pilotErrorDiag": "",
[2025-07-25 08:27:13]  *** Listing of results directory ***
[2025-07-25 08:27:13] total 565736
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas    530466 Jul 22 03:08 pilot3.tar.gz
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas      5112 Jul 22 03:35 queuedata.json
[2025-07-25 08:27:13] -rwx------ 1 boincer umatlas     36292 Jul 22 03:36 runpilot2-wrapper.sh
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas       100 Jul 25 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 08:27:13] -rwxr-xr-x 1 boincer umatlas      7986 Jul 25 07:12 run_atlas
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas       105 Jul 25 07:12 job.xml
[2025-07-25 08:27:13] -rw-r--r-- 2 boincer umatlas 320767383 Jul 25 07:12 EVNT.45697521._000205.pool.root.1
[2025-07-25 08:27:13] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 07:12 start_atlas.sh
[2025-07-25 08:27:13] drwxrwx--x 2 boincer umatlas      4096 Jul 25 07:12 shared
[2025-07-25 08:27:13] -rw-r--r-- 2 boincer umatlas    542910 Jul 25 07:12 input.tar.gz
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas         0 Jul 25 07:12 boinc_lockfile
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas      2634 Jul 25 07:12 pandaJob.out
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas    979717 Jul 25 07:12 agis_schedconf.cvmfs.json
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas   1593052 Jul 25 07:12 agis_ddmendpoints.agis.ALL.json
[2025-07-25 08:27:13] drwx------ 4 boincer umatlas      4096 Jul 25 07:12 pilot3
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas      6050 Jul 25 08:20 init_data.xml
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas 253171884 Jul 25 08:26 HITS.45697523._005149.pool.root.1
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas       529 Jul 25 08:26 boinc_task_state.xml
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas        95 Jul 25 08:26 pilot_heartbeat.json
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas      1045 Jul 25 08:26 memory_monitor_summary.json
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas    305139 Jul 25 08:26 log.45697523._005149.job.log.tgz.1
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas      7832 Jul 25 08:26 heartbeat.json
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas        27 Jul 25 08:26 wrapper_checkpoint.txt
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas      8192 Jul 25 08:26 boinc_mmap_file
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas       819 Jul 25 08:27 pilotlog.txt
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas    445806 Jul 25 08:27 log.45697523._005149.job.log.1
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas       357 Jul 25 08:27 output.list
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas       620 Jul 25 08:27 runtime_log
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas    768000 Jul 25 08:27 result.tar.gz
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas       658 Jul 25 08:27 VLKKDmniMy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmooILDmCyRpfm.diag
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas      8660 Jul 25 08:27 runtime_log.err
[2025-07-25 08:27:13] -rw-r--r-- 1 boincer umatlas     21836 Jul 25 08:27 stderr.txt
[2025-07-25 08:27:13] HITS file was successfully produced:
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas 253171884 Jul 25 08:26 shared/HITS.pool.root.1
[2025-07-25 08:27:13]  *** Contents of shared directory: ***
[2025-07-25 08:27:13] total 561796
[2025-07-25 08:27:13] -rw-r--r-- 2 boincer umatlas 320767383 Jul 25 07:12 ATLAS.root_0
[2025-07-25 08:27:13] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 07:12 start_atlas.sh
[2025-07-25 08:27:13] -rw-r--r-- 2 boincer umatlas    542910 Jul 25 07:12 input.tar.gz
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas 253171884 Jul 25 08:26 HITS.pool.root.1
[2025-07-25 08:27:13] -rw------- 1 boincer umatlas    768000 Jul 25 08:27 result.tar.gz
08:27:15 (2300): run_atlas exited; CPU time 33062.386104
08:27:15 (2300): called boinc_finish(0)

</stderr_txt>
]]>

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