Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:01:54 (3640836): wrapper (7.7.26015): starting
07:01:54 (3640836): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 07:01:54] Arguments: --nthreads 8
[2025-07-25 07:01:54] Threads: 8
[2025-07-25 07:01:54] Checking for CVMFS
[2025-07-25 07:01:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 07:01:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 07:01:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 07:01:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 07:01:55] 2.13.0.0 2191370 15414 339140 148738 0 682 17477893 32935937 24644 16776704 0 78516914 99.514 130788350 18659 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 07:01:55] CVMFS is ok
[2025-07-25 07:01:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 07:01:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 07:01:55] Further information can be found at the LHC@home message board.
[2025-07-25 07:01:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 07:01:55] Checking for apptainer binary...
[2025-07-25 07:01:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 07:01:55] Running /usr/bin/apptainer --version
[2025-07-25 07:01:55] apptainer version 1.4.1-1.el9
[2025-07-25 07:01:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 07:01:56] c7-2-14.aglt2.org
[2025-07-25 07:01:56] apptainer works
[2025-07-25 07:01:56] Set ATHENA_PROC_NUMBER=8
[2025-07-25 07:01:56] Set ATHENA_CORE_NUMBER=8
[2025-07-25 07:01:56] Starting ATLAS job with PandaID=6744951916
[2025-07-25 07:01:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 08:35:53]  *** The last 200 lines of the pilot log: ***
[2025-07-25 08:35:53]  scope=mc23_13p6TeV
[2025-07-25 08:35:53]  status=None
[2025-07-25 08:35:53]  status_code=0
[2025-07-25 08:35:53]  storage_token=
[2025-07-25 08:35:53]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6744951916/log.45743349._016132.job.log.tgz.1
[2025-07-25 08:35:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6d/89/log.45743349._016132.job.log.tgz.1
[2025-07-25 08:35:53]  workdir=None
[2025-07-25 08:35:53] ]
[2025-07-25 08:35:53] 2025-07-25 12:35:08,710 | INFO     | transferring file log.45743349._016132.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6744951916/log.45743349._016132.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 08:35:53] 2025-07-25 12:35:08,710 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6744951916/log.45743349._016132.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._016132.job
[2025-07-25 08:35:53] 2025-07-25 12:35:08,735 | INFO     | adding to output.list: log.45743349._016132.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6d/89/log.45743349._016132.job.log.tg
[2025-07-25 08:35:53] 2025-07-25 12:35:08,736 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 08:35:53] 2025-07-25 12:35:08,736 | INFO     | summary of transferred files:
[2025-07-25 08:35:53] 2025-07-25 12:35:08,736 | INFO     |  -- lfn=log.45743349._016132.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 08:35:53] 2025-07-25 12:35:08,736 | INFO     | stage-out finished correctly
[2025-07-25 08:35:53] 2025-07-25 12:35:09,076 | INFO     | 5569s have passed since pilot start - server update state is 'RUNNING'
[2025-07-25 08:35:53] 2025-07-25 12:35:09,193 | INFO     | monitor loop #386: job 0:6744951916 is in state 'finished'
[2025-07-25 08:35:53] 2025-07-25 12:35:09,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:35:53] 2025-07-25 12:35:09,465 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 08:35:53] 2025-07-25 12:35:11,696 | INFO     | monitor loop #387: job 0:6744951916 is in state 'finished'
[2025-07-25 08:35:53] 2025-07-25 12:35:11,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:35:53] 2025-07-25 12:35:12,150 | INFO     | job 6744951916 has state=finished
[2025-07-25 08:35:53] 2025-07-25 12:35:12,151 | INFO     | preparing for final server update for job 6744951916 in state='finished'
[2025-07-25 08:35:53] 2025-07-25 12:35:12,151 | INFO     | this job has now completed (state=finished)
[2025-07-25 08:35:53] 2025-07-25 12:35:12,151 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 08:35:53] 2025-07-25 12:35:12,151 | INFO     | log transfer has been attempted: DONE
[2025-07-25 08:35:53] 2025-07-25 12:35:12,151 | INFO     | job 6744951916 has finished - writing final server update
[2025-07-25 08:35:53] 2025-07-25 12:35:12,152 | INFO     | total number of processed events: 400 (read)
[2025-07-25 08:35:53] 2025-07-25 12:35:12,162 | INFO     | executing command: lscpu
[2025-07-25 08:35:53] 2025-07-25 12:35:12,244 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 08:35:53] 2025-07-25 12:35:14,202 | INFO     | monitor loop #388: job 0:6744951916 is in state 'finished'
[2025-07-25 08:35:53] 2025-07-25 12:35:14,202 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:35:53] 2025-07-25 12:35:16,706 | INFO     | monitor loop #389: job 0:6744951916 is in state 'finished'
[2025-07-25 08:35:53] 2025-07-25 12:35:16,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:35:53] 2025-07-25 12:35:19,215 | INFO     | monitor loop #390: job 0:6744951916 is in state 'finished'
[2025-07-25 08:35:53] 2025-07-25 12:35:19,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 08:35:53] 2025-07-25 12:35:19,851 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 08:35:53] 2025-07-25 12:35:19,864 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2849.2462187500005
[2025-07-25 08:35:53] 2025-07-25 12:35:19,899 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6744951916/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 08:35:53] 2025-07-25 12:35:19,899 | INFO     | extracted standard info from prmon json
[2025-07-25 08:35:53] 2025-07-25 12:35:19,899 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 08:35:53] 2025-07-25 12:35:19,900 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 08:35:53] 2025-07-25 12:35:19,900 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 08:35:53] 2025-07-25 12:35:19,900 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 08:35:53] 2025-07-25 12:35:19,902 | INFO     | fitting pss+swap vs Time
[2025-07-25 08:35:53] 2025-07-25 12:35:19,902 | INFO     | sum of square deviations: 183761585.0
[2025-07-25 08:35:53] 2025-07-25 12:35:19,903 | INFO     | sum of deviations: -5101778584.5
[2025-07-25 08:35:53] 2025-07-25 12:35:19,903 | INFO     | mean x: 1753444224.5
[2025-07-25 08:35:53] 2025-07-25 12:35:19,903 | INFO     | mean y: 2203392.25
[2025-07-25 08:35:53] 2025-07-25 12:35:19,903 | INFO     | -- intersect: 48683129787.55352
[2025-07-25 08:35:53] 2025-07-25 12:35:19,903 | INFO     | intersect: 48683129787.55352
[2025-07-25 08:35:53] 2025-07-25 12:35:19,903 | INFO     | chi2: 0.03918673809853462
[2025-07-25 08:35:53] 2025-07-25 12:35:19,903 | INFO     | -- intersect: 48683129787.55352
[2025-07-25 08:35:53] 2025-07-25 12:35:19,903 | INFO     | current memory leak: -27.76 B/s (using 84 data points, chi2=0.04)
[2025-07-25 08:35:53] 2025-07-25 12:35:19,904 | INFO     | could have reported an average CPU frequency of 2940 MHz (7 samples)
[2025-07-25 08:35:53] 2025-07-25 12:35:19,904 | INFO     | ..............................
[2025-07-25 08:35:53] 2025-07-25 12:35:19,904 | INFO     | . Timing measurements:
[2025-07-25 08:35:53] 2025-07-25 12:35:19,904 | INFO     | . get job = 0 s
[2025-07-25 08:35:53] 2025-07-25 12:35:19,904 | INFO     | . initial setup = 2 s
[2025-07-25 08:35:53] 2025-07-25 12:35:19,904 | INFO     | . payload setup = 13 s
[2025-07-25 08:35:53] 2025-07-25 12:35:19,904 | INFO     | . stage-in = 0 s
[2025-07-25 08:35:53] 2025-07-25 12:35:19,904 | INFO     | . payload execution = 5524 s
[2025-07-25 08:35:53] 2025-07-25 12:35:19,904 | INFO     | . stage-out = 0 s
[2025-07-25 08:35:53] 2025-07-25 12:35:19,905 | INFO     | . log creation = 0 s
[2025-07-25 08:35:53] 2025-07-25 12:35:19,905 | INFO     | ..............................
[2025-07-25 08:35:53] 2025-07-25 12:35:19,987 | INFO     | 
[2025-07-25 08:35:53] 2025-07-25 12:35:19,987 | INFO     | job summary report
[2025-07-25 08:35:53] 2025-07-25 12:35:19,987 | INFO     | --------------------------------------------------
[2025-07-25 08:35:53] 2025-07-25 12:35:19,987 | INFO     | PanDA job id: 6744951916
[2025-07-25 08:35:53] 2025-07-25 12:35:19,987 | INFO     | task id: 45743349
[2025-07-25 08:35:53] 2025-07-25 12:35:19,987 | INFO     | errors: (none)
[2025-07-25 08:35:53] 2025-07-25 12:35:19,987 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | pilot state: finished 
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | transexitcode: 0
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | exeerrorcode: 0
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | exeerrordiag: 
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | exitcode: 0
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | exitmsg: OK
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | cpuconsumptiontime: 36936 s
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | nevents: 400
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | neventsw: 0
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | pid: 3651898
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | pgrp: 3651898
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | corecount: 8
[2025-07-25 08:35:53] 2025-07-25 12:35:19,988 | INFO     | event service: False
[2025-07-25 08:35:53] 2025-07-25 12:35:19,989 | INFO     | sizes: {0: 2397301, 1: 2397500, 9: 2397762, 11: 2397790, 5541: 2424501, 5544: 2433683, 5555: 2433821}
[2025-07-25 08:35:53] 2025-07-25 12:35:19,989 | INFO     | --------------------------------------------------
[2025-07-25 08:35:53] 2025-07-25 12:35:19,989 | INFO     | 
[2025-07-25 08:35:53] 2025-07-25 12:35:19,989 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-25 08:35:53] 2025-07-25 12:35:20,012 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 08:35:53] 2025-07-25 12:35:20,013 | INFO     | job 6744951916 has completed (purged errors)
[2025-07-25 08:35:53] 2025-07-25 12:35:20,014 | INFO     | overall cleanup function is called
[2025-07-25 08:35:53] 2025-07-25 12:35:21,022 | INFO     | --- collectZombieJob: --- 10, [3651898]
[2025-07-25 08:35:53] 2025-07-25 12:35:21,026 | INFO     | zombie collector waiting for pid 3651898
[2025-07-25 08:35:53] 2025-07-25 12:35:21,026 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 08:35:53] 2025-07-25 12:35:21,026 | INFO     | collected zombie processes
[2025-07-25 08:35:53] 2025-07-25 12:35:21,026 | INFO     | will attempt to kill all subprocesses of pid=3651898
[2025-07-25 08:35:53] 2025-07-25 12:35:21,612 | INFO     | process IDs to be killed: [3651898] (in reverse order)
[2025-07-25 08:35:53] 2025-07-25 12:35:21,776 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 08:35:53] 2025-07-25 12:35:21,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 08:35:53] 2025-07-25 12:35:21,798 | INFO     | did not find any defunct processes belonging to 3651898
[2025-07-25 08:35:53] 2025-07-25 12:35:21,821 | INFO     | did not find any defunct processes belonging to 3651898
[2025-07-25 08:35:53] 2025-07-25 12:35:21,821 | INFO     | ready for new job
[2025-07-25 08:35:53] 2025-07-25 12:35:21,821 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 08:35:53] 2025-07-25 12:35:21,823 | INFO     | ***************************************
[2025-07-25 08:35:53] 2025-07-25 12:35:21,823 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 08:35:53] 2025-07-25 12:35:21,823 | INFO     | ***************************************
[2025-07-25 08:35:53] 2025-07-25 12:35:21,823 | INFO     | 
[2025-07-25 08:35:53] 2025-07-25 12:35:21,841 | INFO     | architecture information:
[2025-07-25 08:35:53] 2025-07-25 12:35:21,842 | INFO     | executing command: cat /etc/os-release
[2025-07-25 08:35:53] 2025-07-25 12:35:21,861 | INFO     | cat /etc/os-release:
[2025-07-25 08:35:53] NAME="CentOS Linux"
[2025-07-25 08:35:53] VERSION="7 (Core)"
[2025-07-25 08:35:53] ID="centos"
[2025-07-25 08:35:53] ID_LIKE="rhel fedora"
[2025-07-25 08:35:53] VERSION_ID="7"
[2025-07-25 08:35:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 08:35:53] ANSI_COLOR="0;31"
[2025-07-25 08:35:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 08:35:53] HOME_URL="https://www.centos.org/"
[2025-07-25 08:35:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 08:35:53] 
[2025-07-25 08:35:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 08:35:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 08:35:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 08:35:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 08:35:53] 
[2025-07-25 08:35:53] 2025-07-25 12:35:21,861 | INFO     | ***************************************
[2025-07-25 08:35:53] 2025-07-25 12:35:22,365 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-25 08:35:53] 2025-07-25 12:35:22,386 | INFO     | sufficient remaining disk space (75814141952 B)
[2025-07-25 08:35:53] 2025-07-25 12:35:22,387 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 08:35:53] 2025-07-25 12:35:22,387 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 08:35:53] 2025-07-25 12:35:22,387 | INFO     | update_server=False
[2025-07-25 08:35:53] 2025-07-25 12:35:22,387 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 08:35:53] 2025-07-25 12:35:22,387 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 08:35:53] 2025-07-25 12:35:22,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:35:53] 2025-07-25 12:35:22,727 | INFO     | aborting loop
[2025-07-25 08:35:53] 2025-07-25 12:35:22,804 | INFO     | all data control threads have been joined
[2025-07-25 08:35:53] 2025-07-25 12:35:23,282 | INFO     | all payload control threads have been joined
[2025-07-25 08:35:53] 2025-07-25 12:35:23,294 | INFO     | all job control threads have been joined
[2025-07-25 08:35:53] 2025-07-25 12:35:23,394 | INFO     | [job] retrieve thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:23,449 | INFO     | [job] validate thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:23,510 | INFO     | [payload] validate_post thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:23,581 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:23,660 | INFO     | [payload] failed_post thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:23,732 | INFO     | [job] job monitor thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:23,811 | INFO     | [data] control thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:23,935 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:23,969 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:24,287 | INFO     | [payload] control thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:24,301 | INFO     | [job] control thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:24,372 | INFO     | [data] copytool_in thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:24,397 | INFO     | [data] copytool_out thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:24,571 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 08:35:53] 2025-07-25 12:35:24,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:25,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:35:53] 2025-07-25 12:35:26,010 | INFO     | [job] queue monitor thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:28,581 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 08:35:53] 2025-07-25 12:35:29,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140164311238464)>', '<ExcThread(monitor, started 140163824998144)>']
[2025-07-25 08:35:53] 2025-07-25 12:35:34,752 | INFO     | all workflow threads have been joined
[2025-07-25 08:35:53] 2025-07-25 12:35:34,753 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 08:35:53] 2025-07-25 12:35:34,753 | INFO     | traces error code: 0
[2025-07-25 08:35:53] 2025-07-25 12:35:34,753 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 08:35:53] 2025-07-25 12:35:52,867 | INFO     | PID=3644423 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 08:35:53] 2025-07-25 12:35:52,867 | INFO     | .. there are 28 such processes running
[2025-07-25 08:35:53] 2025-07-25 12:35:52,867 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 08:35:53] 2025-07-25 12:35:52,867 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 08:35:53] 2025-07-25 12:35:52,867 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 08:35:53] 2025-07-25 12:35:52,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 08:35:53] 2025-07-25 12:35:52,868 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 08:35:53] 2025-07-25 12:35:52,868 | INFO     | [monitor] control thread has ended
[2025-07-25 08:35:53] 2025-07-25 12:35:52,992 [wrapper] ==== pilot stdout END ====
[2025-07-25 08:35:53] 2025-07-25 12:35:52,995 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 08:35:53] 2025-07-25 12:35:52,998 [wrapper] pilotpid: 3644423
[2025-07-25 08:35:53] 2025-07-25 12:35:53,001 [wrapper] Pilot exit status: 0
[2025-07-25 08:35:53] 2025-07-25 12:35:53,016 [wrapper] pandaids: 6744951916
[2025-07-25 08:35:53] 2025-07-25 12:35:53,135 [wrapper] cleanup supervisor_pilot   15750 3644424
[2025-07-25 08:35:53] 2025-07-25 12:35:53,138 [wrapper] Test setup, not cleaning
[2025-07-25 08:35:53] 2025-07-25 12:35:53,140 [wrapper] apfmon messages muted
[2025-07-25 08:35:53] 2025-07-25 12:35:53,143 [wrapper] ==== wrapper stdout END ====
[2025-07-25 08:35:53] 2025-07-25 12:35:53,146 [wrapper] ==== wrapper stderr END ====
[2025-07-25 08:35:53]  *** Error codes and diagnostics ***
[2025-07-25 08:35:53]     "exeErrorCode": 0,
[2025-07-25 08:35:53]     "exeErrorDiag": "",
[2025-07-25 08:35:53]     "pilotErrorCode": 0,
[2025-07-25 08:35:53]     "pilotErrorDiag": "",
[2025-07-25 08:35:53]  *** Listing of results directory ***
[2025-07-25 08:35:53] total 345012
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 00:28 pilot3.tar.gz
[2025-07-25 08:35:53] -rwx------. 1 boincer umatlas     36292 Jul 25 00:32 runpilot2-wrapper.sh
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 00:32 queuedata.json
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas       100 Jul 25 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 08:35:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 07:01 run_atlas
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas       105 Jul 25 07:01 job.xml
[2025-07-25 08:35:53] -rw-r--r--. 2 boincer umatlas 149010834 Jul 25 07:01 EVNT.45743347._000903.pool.root.1
[2025-07-25 08:35:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 07:01 start_atlas.sh
[2025-07-25 08:35:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 07:01 shared
[2025-07-25 08:35:53] -rw-r--r--. 2 boincer umatlas    542892 Jul 25 07:01 input.tar.gz
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas         0 Jul 25 07:01 boinc_lockfile
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas      2561 Jul 25 07:01 pandaJob.out
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas    979717 Jul 25 07:02 agis_schedconf.cvmfs.json
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas   1593052 Jul 25 07:02 agis_ddmendpoints.agis.ALL.json
[2025-07-25 08:35:53] drwx------. 4 boincer umatlas      4096 Jul 25 07:02 pilot3
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas      6933 Jul 25 08:29 init_data.xml
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas 198738426 Jul 25 08:34 HITS.45743349._016132.pool.root.1
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas       530 Jul 25 08:34 boinc_task_state.xml
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas        95 Jul 25 08:34 pilot_heartbeat.json
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas      1033 Jul 25 08:35 memory_monitor_summary.json
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas    307134 Jul 25 08:35 log.45743349._016132.job.log.tgz.1
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas      7784 Jul 25 08:35 heartbeat.json
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 08:35 boinc_mmap_file
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas        27 Jul 25 08:35 wrapper_checkpoint.txt
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas       893 Jul 25 08:35 pilotlog.txt
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas    527990 Jul 25 08:35 log.45743349._016132.job.log.1
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas       357 Jul 25 08:35 output.list
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas       620 Jul 25 08:35 runtime_log
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas    849920 Jul 25 08:35 result.tar.gz
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas       651 Jul 25 08:35 PX0KDmBIPz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmwSyKDmKCHOWm.diag
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas      8655 Jul 25 08:35 runtime_log.err
[2025-07-25 08:35:53] -rw-r--r--. 1 boincer umatlas     21966 Jul 25 08:35 stderr.txt
[2025-07-25 08:35:53] HITS file was successfully produced:
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas 198738426 Jul 25 08:34 shared/HITS.pool.root.1
[2025-07-25 08:35:53]  *** Contents of shared directory: ***
[2025-07-25 08:35:53] total 340992
[2025-07-25 08:35:53] -rw-r--r--. 2 boincer umatlas 149010834 Jul 25 07:01 ATLAS.root_0
[2025-07-25 08:35:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 07:01 start_atlas.sh
[2025-07-25 08:35:53] -rw-r--r--. 2 boincer umatlas    542892 Jul 25 07:01 input.tar.gz
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas 198738426 Jul 25 08:34 HITS.pool.root.1
[2025-07-25 08:35:53] -rw-------. 1 boincer umatlas    849920 Jul 25 08:35 result.tar.gz
08:35:54 (3640836): run_atlas exited; CPU time 37118.152459
08:35:54 (3640836): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN