Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:57:32 (1363787): wrapper (7.7.26015): starting
06:57:32 (1363787): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 06:57:32] Arguments: --nthreads 8
[2025-07-25 06:57:32] Threads: 8
[2025-07-25 06:57:32] Checking for CVMFS
[2025-07-25 06:57:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 06:57:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 06:57:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 06:57:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 06:57:33] 2.12.6.0 557484 15410 300252 148738 0 538 28813423 32935936 26778 16776704 0 69343926 99.533 112963360 21520 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 06:57:33] CVMFS is ok
[2025-07-25 06:57:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 06:57:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 06:57:33] Further information can be found at the LHC@home message board.
[2025-07-25 06:57:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 06:57:33] Checking for apptainer binary...
[2025-07-25 06:57:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 06:57:33] Running /usr/bin/apptainer --version
[2025-07-25 06:57:33] apptainer version 1.4.1-1.el9
[2025-07-25 06:57:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 06:57:33] c7-3-34.aglt2.org
[2025-07-25 06:57:33] apptainer works
[2025-07-25 06:57:33] Set ATHENA_PROC_NUMBER=8
[2025-07-25 06:57:33] Set ATHENA_CORE_NUMBER=8
[2025-07-25 06:57:33] Starting ATLAS job with PandaID=6744951809
[2025-07-25 06:57:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 09:01:05]  *** The last 200 lines of the pilot log: ***
[2025-07-25 09:01:05] 2025-07-25 13:00:28,799 | INFO     | executing command: lscpu
[2025-07-25 09:01:05] 2025-07-25 13:00:28,866 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 09:01:05] 2025-07-25 13:00:31,094 | INFO     | monitor loop #520: job 0:6744951809 is in state 'finished'
[2025-07-25 09:01:05] 2025-07-25 13:00:31,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,154 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 09:01:05] 2025-07-25 13:00:33,160 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3026.8982812499994
[2025-07-25 09:01:05] 2025-07-25 13:00:33,175 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744951809/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,176 | INFO     | extracted standard info from prmon json
[2025-07-25 09:01:05] 2025-07-25 13:00:33,176 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 09:01:05] 2025-07-25 13:00:33,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 09:01:05] 2025-07-25 13:00:33,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 09:01:05] 2025-07-25 13:00:33,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 09:01:05] 2025-07-25 13:00:33,178 | INFO     | fitting pss+swap vs Time
[2025-07-25 09:01:05] 2025-07-25 13:00:33,179 | INFO     | sum of square deviations: 535786790.0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,179 | INFO     | sum of deviations: -12884095906.999998
[2025-07-25 09:01:05] 2025-07-25 13:00:33,179 | INFO     | mean x: 1753444759.5
[2025-07-25 09:01:05] 2025-07-25 13:00:33,179 | INFO     | mean y: 2229654.1333333333
[2025-07-25 09:01:05] 2025-07-25 13:00:33,180 | INFO     | -- intersect: 42167417132.95219
[2025-07-25 09:01:05] 2025-07-25 13:00:33,180 | INFO     | intersect: 42167417132.95219
[2025-07-25 09:01:05] 2025-07-25 13:00:33,180 | INFO     | chi2: 2.037257184899638
[2025-07-25 09:01:05] 2025-07-25 13:00:33,180 | INFO     | sum of square deviations: 471562330.0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,181 | INFO     | sum of deviations: -10908860153.000004
[2025-07-25 09:01:05] 2025-07-25 13:00:33,181 | INFO     | mean x: 1753444607.0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,181 | INFO     | mean y: 2234322.086956522
[2025-07-25 09:01:05] 2025-07-25 13:00:33,181 | INFO     | -- intersect: 40565444712.100624
[2025-07-25 09:01:05] 2025-07-25 13:00:33,181 | INFO     | intersect: 40565444712.100624
[2025-07-25 09:01:05] 2025-07-25 13:00:33,181 | INFO     | chi2: 2.0389837638973156
[2025-07-25 09:01:05] 2025-07-25 13:00:33,181 | INFO     | current chi2=2.0389837638973156 (change=-0.08475017344275713 %)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,181 | INFO     | right removable region: 114
[2025-07-25 09:01:05] 2025-07-25 13:00:33,181 | INFO     | sum of square deviations: 471562330.0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,182 | INFO     | sum of deviations: -30223254834.000008
[2025-07-25 09:01:05] 2025-07-25 13:00:33,182 | INFO     | mean x: 1753444912.0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,182 | INFO     | mean y: 2270136.0782608697
[2025-07-25 09:01:05] 2025-07-25 13:00:33,182 | INFO     | -- intersect: 112383622592.19305
[2025-07-25 09:01:05] 2025-07-25 13:00:33,182 | INFO     | intersect: 112383622592.19305
[2025-07-25 09:01:05] 2025-07-25 13:00:33,182 | INFO     | chi2: 0.3649032574048127
[2025-07-25 09:01:05] 2025-07-25 13:00:33,182 | INFO     | current chi2=0.3649032574048127 (change=82.08850310557186 %)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,183 | INFO     | sum of square deviations: 412686807.5
[2025-07-25 09:01:05] 2025-07-25 13:00:33,183 | INFO     | sum of deviations: -27208802797.499996
[2025-07-25 09:01:05] 2025-07-25 13:00:33,183 | INFO     | mean x: 1753445064.5
[2025-07-25 09:01:05] 2025-07-25 13:00:33,183 | INFO     | mean y: 2262277.827272727
[2025-07-25 09:01:05] 2025-07-25 13:00:33,183 | INFO     | -- intersect: 115608431675.98563
[2025-07-25 09:01:05] 2025-07-25 13:00:33,183 | INFO     | intersect: 115608431675.98563
[2025-07-25 09:01:05] 2025-07-25 13:00:33,183 | INFO     | chi2: 0.3610408549501298
[2025-07-25 09:01:05] 2025-07-25 13:00:33,184 | INFO     | current chi2=0.3610408549501298 (change=1.0584729997074571 %)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,184 | INFO     | left removable region: 20
[2025-07-25 09:01:05] 2025-07-25 13:00:33,184 | INFO     | sum of square deviations: 257521107.5
[2025-07-25 09:01:05] 2025-07-25 13:00:33,184 | INFO     | sum of deviations: -16276008074.500002
[2025-07-25 09:01:05] 2025-07-25 13:00:33,184 | INFO     | mean x: 1753445186.5
[2025-07-25 09:01:05] 2025-07-25 13:00:33,184 | INFO     | mean y: 2242128.074468085
[2025-07-25 09:01:05] 2025-07-25 13:00:33,184 | INFO     | -- intersect: 110824567687.02757
[2025-07-25 09:01:05] 2025-07-25 13:00:33,184 | INFO     | intersect: 110824567687.02757
[2025-07-25 09:01:05] 2025-07-25 13:00:33,185 | INFO     | chi2: 0.34242193281811706
[2025-07-25 09:01:05] 2025-07-25 13:00:33,185 | INFO     | -- intersect: 110824567687.02757
[2025-07-25 09:01:05] 2025-07-25 13:00:33,185 | INFO     | current memory leak: -63.20 B/s (using 94 data points, chi2=0.34)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,185 | INFO     | could have reported an average CPU frequency of 2998 MHz (8 samples)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | ..............................
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | . Timing measurements:
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | . get job = 0 s
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | . initial setup = 3 s
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | . payload setup = 17 s
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | . stage-in = 0 s
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | . payload execution = 7306 s
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | . stage-out = 0 s
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | . log creation = 0 s
[2025-07-25 09:01:05] 2025-07-25 13:00:33,186 | INFO     | ..............................
[2025-07-25 09:01:05] 2025-07-25 13:00:33,277 | INFO     | 
[2025-07-25 09:01:05] 2025-07-25 13:00:33,277 | INFO     | job summary report
[2025-07-25 09:01:05] 2025-07-25 13:00:33,277 | INFO     | --------------------------------------------------
[2025-07-25 09:01:05] 2025-07-25 13:00:33,277 | INFO     | PanDA job id: 6744951809
[2025-07-25 09:01:05] 2025-07-25 13:00:33,277 | INFO     | task id: 45743349
[2025-07-25 09:01:05] 2025-07-25 13:00:33,277 | INFO     | errors: (none)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | pilot state: finished 
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | transexitcode: 0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | exeerrorcode: 0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | exeerrordiag: 
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | exitcode: 0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | exitmsg: OK
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | cpuconsumptiontime: 37147 s
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | nevents: 400
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | neventsw: 0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | pid: 1375568
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | pgrp: 1375568
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | corecount: 8
[2025-07-25 09:01:05] 2025-07-25 13:00:33,278 | INFO     | event service: False
[2025-07-25 09:01:05] 2025-07-25 13:00:33,279 | INFO     | sizes: {0: 2396645, 1: 2397501, 9: 2397763, 12: 2397791, 7327: 2425126, 7328: 2434124, 7329: 2434308, 7333: 2434502}
[2025-07-25 09:01:05] 2025-07-25 13:00:33,279 | INFO     | --------------------------------------------------
[2025-07-25 09:01:05] 2025-07-25 13:00:33,279 | INFO     | 
[2025-07-25 09:01:05] 2025-07-25 13:00:33,279 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 09:01:05] 2025-07-25 13:00:33,310 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,311 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | job 6744951809 has completed (purged errors)
[2025-07-25 09:01:05] 2025-07-25 13:00:33,312 | INFO     | overall cleanup function is called
[2025-07-25 09:01:05] 2025-07-25 13:00:34,320 | INFO     | --- collectZombieJob: --- 10, [1375568]
[2025-07-25 09:01:05] 2025-07-25 13:00:34,321 | INFO     | zombie collector waiting for pid 1375568
[2025-07-25 09:01:05] 2025-07-25 13:00:34,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 09:01:05] 2025-07-25 13:00:34,321 | INFO     | collected zombie processes
[2025-07-25 09:01:05] 2025-07-25 13:00:34,321 | INFO     | will attempt to kill all subprocesses of pid=1375568
[2025-07-25 09:01:05] 2025-07-25 13:00:34,778 | INFO     | process IDs to be killed: [1375568] (in reverse order)
[2025-07-25 09:01:05] 2025-07-25 13:00:34,933 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 09:01:05] 2025-07-25 13:00:34,934 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 09:01:05] 2025-07-25 13:00:34,953 | INFO     | did not find any defunct processes belonging to 1375568
[2025-07-25 09:01:05] 2025-07-25 13:00:34,972 | INFO     | did not find any defunct processes belonging to 1375568
[2025-07-25 09:01:05] 2025-07-25 13:00:34,972 | INFO     | ready for new job
[2025-07-25 09:01:05] 2025-07-25 13:00:34,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 09:01:05] 2025-07-25 13:00:34,974 | INFO     | ***************************************
[2025-07-25 09:01:05] 2025-07-25 13:00:34,974 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 09:01:05] 2025-07-25 13:00:34,974 | INFO     | ***************************************
[2025-07-25 09:01:05] 2025-07-25 13:00:34,974 | INFO     | 
[2025-07-25 09:01:05] 2025-07-25 13:00:34,992 | INFO     | architecture information:
[2025-07-25 09:01:05] 2025-07-25 13:00:34,993 | INFO     | executing command: cat /etc/os-release
[2025-07-25 09:01:05] 2025-07-25 13:00:35,011 | INFO     | cat /etc/os-release:
[2025-07-25 09:01:05] NAME="CentOS Linux"
[2025-07-25 09:01:05] VERSION="7 (Core)"
[2025-07-25 09:01:05] ID="centos"
[2025-07-25 09:01:05] ID_LIKE="rhel fedora"
[2025-07-25 09:01:05] VERSION_ID="7"
[2025-07-25 09:01:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 09:01:05] ANSI_COLOR="0;31"
[2025-07-25 09:01:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 09:01:05] HOME_URL="https://www.centos.org/"
[2025-07-25 09:01:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 09:01:05] 
[2025-07-25 09:01:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 09:01:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 09:01:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 09:01:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 09:01:05] 
[2025-07-25 09:01:05] 2025-07-25 13:00:35,011 | INFO     | ***************************************
[2025-07-25 09:01:05] 2025-07-25 13:00:35,515 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 09:01:05] 2025-07-25 13:00:35,538 | INFO     | sufficient remaining disk space (76028051456 B)
[2025-07-25 09:01:05] 2025-07-25 13:00:35,538 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 09:01:05] 2025-07-25 13:00:35,538 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 09:01:05] 2025-07-25 13:00:35,538 | INFO     | update_server=False
[2025-07-25 09:01:05] 2025-07-25 13:00:35,538 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 09:01:05] 2025-07-25 13:00:35,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 09:01:05] 2025-07-25 13:00:35,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 09:01:05] 2025-07-25 13:00:35,542 | INFO     | aborting loop
[2025-07-25 09:01:05] 2025-07-25 13:00:36,267 | INFO     | all data control threads have been joined
[2025-07-25 09:01:05] 2025-07-25 13:00:36,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 09:01:05] 2025-07-25 13:00:36,470 | INFO     | all payload control threads have been joined
[2025-07-25 09:01:05] 2025-07-25 13:00:36,545 | INFO     | [job] retrieve thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:36,548 | INFO     | [job] job monitor thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:36,827 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:36,976 | INFO     | [payload] failed_post thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:36,981 | INFO     | [job] validate thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:37,043 | INFO     | all job control threads have been joined
[2025-07-25 09:01:05] 2025-07-25 13:00:37,107 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:37,274 | INFO     | [data] control thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:37,294 | INFO     | [data] copytool_in thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:37,316 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:37,476 | INFO     | [payload] control thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:37,586 | INFO     | [payload] validate_post thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:37,896 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:38,049 | INFO     | [job] control thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:38,284 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 09:01:05] 2025-07-25 13:00:38,474 | INFO     | [data] copytool_out thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:39,290 | INFO     | [job] queue monitor thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:39,547 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 09:01:05] 2025-07-25 13:00:40,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140048787625792)>', '<ExcThread(monitor, started 140048213210880)>']
[2025-07-25 09:01:05] 2025-07-25 13:00:45,721 | INFO     | all workflow threads have been joined
[2025-07-25 09:01:05] 2025-07-25 13:00:45,722 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 09:01:05] 2025-07-25 13:00:45,722 | INFO     | traces error code: 0
[2025-07-25 09:01:05] 2025-07-25 13:00:45,722 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 09:01:05] 2025-07-25 13:01:05,365 | INFO     | PID=1367843 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 09:01:05] 2025-07-25 13:01:05,366 | INFO     | .. there are 28 such processes running
[2025-07-25 09:01:05] 2025-07-25 13:01:05,367 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 09:01:05] 2025-07-25 13:01:05,368 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 09:01:05] 2025-07-25 13:01:05,368 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 09:01:05] 2025-07-25 13:01:05,368 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 09:01:05] 2025-07-25 13:01:05,368 | INFO     | [monitor] control thread has ended
[2025-07-25 09:01:05] 2025-07-25 13:01:05,479 [wrapper] ==== pilot stdout END ====
[2025-07-25 09:01:05] 2025-07-25 13:01:05,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 09:01:05] 2025-07-25 13:01:05,485 [wrapper] pilotpid: 1367843
[2025-07-25 09:01:05] 2025-07-25 13:01:05,488 [wrapper] Pilot exit status: 0
[2025-07-25 09:01:05] 2025-07-25 13:01:05,526 [wrapper] pandaids: 6744951809
[2025-07-25 09:01:05] 2025-07-25 13:01:05,657 [wrapper] cleanup supervisor_pilot 1863763 1367844
[2025-07-25 09:01:05] 2025-07-25 13:01:05,660 [wrapper] Test setup, not cleaning
[2025-07-25 09:01:05] 2025-07-25 13:01:05,663 [wrapper] apfmon messages muted
[2025-07-25 09:01:05] 2025-07-25 13:01:05,665 [wrapper] ==== wrapper stdout END ====
[2025-07-25 09:01:05] 2025-07-25 13:01:05,667 [wrapper] ==== wrapper stderr END ====
[2025-07-25 09:01:05]  *** Error codes and diagnostics ***
[2025-07-25 09:01:05]     "exeErrorCode": 0,
[2025-07-25 09:01:05]     "exeErrorDiag": "",
[2025-07-25 09:01:05]     "pilotErrorCode": 0,
[2025-07-25 09:01:05]     "pilotErrorDiag": "",
[2025-07-25 09:01:05]  *** Listing of results directory ***
[2025-07-25 09:01:05] total 347548
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 00:16 pilot3.tar.gz
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 00:26 queuedata.json
[2025-07-25 09:01:05] -rwx------. 1 boincer umatlas     36292 Jul 25 00:27 runpilot2-wrapper.sh
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas       100 Jul 25 06:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 09:01:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 06:57 run_atlas
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas       105 Jul 25 06:57 job.xml
[2025-07-25 09:01:05] -rw-r--r--. 2 boincer umatlas 145445675 Jul 25 06:57 EVNT.45743347._000896.pool.root.1
[2025-07-25 09:01:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 06:57 start_atlas.sh
[2025-07-25 09:01:05] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 06:57 shared
[2025-07-25 09:01:05] -rw-r--r--. 2 boincer umatlas    542895 Jul 25 06:57 input.tar.gz
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas         0 Jul 25 06:57 boinc_lockfile
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 06:57 pandaJob.out
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas    979717 Jul 25 06:57 agis_schedconf.cvmfs.json
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas   1593052 Jul 25 06:57 agis_ddmendpoints.agis.ALL.json
[2025-07-25 09:01:05] drwx------. 4 boincer umatlas      4096 Jul 25 06:58 pilot3
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas      6933 Jul 25 08:54 init_data.xml
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas 204541819 Jul 25 08:59 HITS.45743349._016025.pool.root.1
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas       530 Jul 25 08:59 boinc_task_state.xml
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas      1035 Jul 25 09:00 memory_monitor_summary.json
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas    323514 Jul 25 09:00 log.45743349._016025.job.log.tgz.1
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas      7775 Jul 25 09:00 heartbeat.json
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 09:01 boinc_mmap_file
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas        27 Jul 25 09:01 wrapper_checkpoint.txt
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas        95 Jul 25 09:01 pilot_heartbeat.json
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas       823 Jul 25 09:01 pilotlog.txt
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas    689406 Jul 25 09:01 log.45743349._016025.job.log.1
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas       357 Jul 25 09:01 output.list
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas       620 Jul 25 09:01 runtime_log
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas   1034240 Jul 25 09:01 result.tar.gz
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas      8655 Jul 25 09:01 runtime_log.err
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas       651 Jul 25 09:01 aHBNDmaCPz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmkSyKDmUdvOOn.diag
[2025-07-25 09:01:05] -rw-r--r--. 1 boincer umatlas     21243 Jul 25 09:01 stderr.txt
[2025-07-25 09:01:05] HITS file was successfully produced:
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas 204541819 Jul 25 08:59 shared/HITS.pool.root.1
[2025-07-25 09:01:05]  *** Contents of shared directory: ***
[2025-07-25 09:01:05] total 343352
[2025-07-25 09:01:05] -rw-r--r--. 2 boincer umatlas 145445675 Jul 25 06:57 ATLAS.root_0
[2025-07-25 09:01:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 06:57 start_atlas.sh
[2025-07-25 09:01:05] -rw-r--r--. 2 boincer umatlas    542895 Jul 25 06:57 input.tar.gz
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas 204541819 Jul 25 08:59 HITS.pool.root.1
[2025-07-25 09:01:05] -rw-------. 1 boincer umatlas   1034240 Jul 25 09:01 result.tar.gz
09:01:07 (1363787): run_atlas exited; CPU time 37375.418198
09:01:07 (1363787): called boinc_finish(0)

</stderr_txt>
]]>

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