Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:41:17 (1778083): wrapper (7.7.26015): starting
06:41:17 (1778083): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 06:41:18] Arguments: --nthreads 12
[2025-07-25 06:41:18] Threads: 12
[2025-07-25 06:41:18] Checking for CVMFS
[2025-07-25 06:41:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 06:41:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 06:41:19] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 06:41:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 06:41:21] 2.12.6.0 3074763 96865 742528 148738 0 111 30935820 32935937 31156 16776704 2 189036995 99.661 220446329 7099 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 06:41:21] CVMFS is ok
[2025-07-25 06:41:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 06:41:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 06:41:21] Further information can be found at the LHC@home message board.
[2025-07-25 06:41:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 06:41:21] Checking for apptainer binary...
[2025-07-25 06:41:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 06:41:21] Running /usr/bin/apptainer --version
[2025-07-25 06:41:21] apptainer version 1.4.1-1.el9
[2025-07-25 06:41:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 06:41:23] c6-12-25-1.aglt2.org
[2025-07-25 06:41:23] apptainer works
[2025-07-25 06:41:23] Set ATHENA_PROC_NUMBER=12
[2025-07-25 06:41:23] Set ATHENA_CORE_NUMBER=12
[2025-07-25 06:41:23] Starting ATLAS job with PandaID=6744955674
[2025-07-25 06:41:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 20:01:37]  *** The last 200 lines of the pilot log: ***
[2025-07-25 20:01:37] 2025-07-25 22:48:48,301 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 20:01:37] 2025-07-25 22:48:48,705 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.9995104166666
[2025-07-25 20:01:37] 2025-07-25 22:48:49,115 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6744955674/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 20:01:37] 2025-07-25 22:48:49,179 | INFO     | extracted standard info from prmon json
[2025-07-25 20:01:37] 2025-07-25 22:48:49,180 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 20:01:37] 2025-07-25 22:48:49,180 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 20:01:37] 2025-07-25 22:48:49,181 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 20:01:37] 2025-07-25 22:48:49,182 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 20:01:37] 2025-07-25 22:48:49,944 | INFO     | fitting pss+swap vs Time
[2025-07-25 20:01:37] 2025-07-25 22:48:49,991 | INFO     | sum of square deviations: 110044750910.54254
[2025-07-25 20:01:37] 2025-07-25 22:48:50,373 | INFO     | sum of deviations: 934942911325.8141
[2025-07-25 20:01:37] 2025-07-25 22:48:50,373 | INFO     | mean x: 1753462034.5254238
[2025-07-25 20:01:37] 2025-07-25 22:48:50,374 | INFO     | mean y: 2216016.371468927
[2025-07-25 20:01:37] 2025-07-25 22:48:50,374 | INFO     | -- intersect: -14895240571.913904
[2025-07-25 20:01:37] 2025-07-25 22:48:50,374 | INFO     | intersect: -14895240571.913904
[2025-07-25 20:01:37] 2025-07-25 22:48:50,400 | INFO     | chi2: 13.171188516176029
[2025-07-25 20:01:37] 2025-07-25 22:48:50,424 | INFO     | sum of square deviations: 107730026291.03885
[2025-07-25 20:01:37] 2025-07-25 22:48:50,776 | INFO     | monitor loop #1365: job 0:6744955674 is in state 'finished'
[2025-07-25 20:01:37] 2025-07-25 22:48:50,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 20:01:37] 2025-07-25 22:48:50,982 | INFO     | sum of deviations: 1057408716594.4924
[2025-07-25 20:01:37] 2025-07-25 22:48:50,982 | INFO     | mean x: 1753461882.0369844
[2025-07-25 20:01:37] 2025-07-25 22:48:50,982 | INFO     | mean y: 2224062.3271692744
[2025-07-25 20:01:37] 2025-07-25 22:48:50,983 | INFO     | -- intersect: -17208631092.14076
[2025-07-25 20:01:37] 2025-07-25 22:48:50,983 | INFO     | intersect: -17208631092.14076
[2025-07-25 20:01:37] 2025-07-25 22:48:51,008 | INFO     | chi2: 10.97941140959972
[2025-07-25 20:01:37] 2025-07-25 22:48:51,009 | INFO     | current chi2=10.97941140959972 (change=16.64069346425727 %)
[2025-07-25 20:01:37] 2025-07-25 22:48:51,009 | INFO     | right removable region: 702
[2025-07-25 20:01:37] 2025-07-25 22:48:51,031 | INFO     | sum of square deviations: 107729366516.11096
[2025-07-25 20:01:37] 2025-07-25 22:48:51,494 | INFO     | sum of deviations: 720697754209.0112
[2025-07-25 20:01:37] 2025-07-25 22:48:51,495 | INFO     | mean x: 1753462187.0355618
[2025-07-25 20:01:37] 2025-07-25 22:48:51,496 | INFO     | mean y: 2230122.439544808
[2025-07-25 20:01:37] 2025-07-25 22:48:51,513 | INFO     | -- intersect: -11728241346.525805
[2025-07-25 20:01:37] 2025-07-25 22:48:51,513 | INFO     | intersect: -11728241346.525805
[2025-07-25 20:01:37] 2025-07-25 22:48:51,534 | INFO     | chi2: 8.901066161359294
[2025-07-25 20:01:37] 2025-07-25 22:48:51,535 | INFO     | current chi2=8.901066161359294 (change=32.42017491111328 %)
[2025-07-25 20:01:37] 2025-07-25 22:48:51,538 | INFO     | sum of square deviations: 105446680655.03299
[2025-07-25 20:01:37] 2025-07-25 22:48:52,078 | INFO     | sum of deviations: 561471415023.4066
[2025-07-25 20:01:37] 2025-07-25 22:48:52,079 | INFO     | mean x: 1753462339.5458453
[2025-07-25 20:01:37] 2025-07-25 22:48:52,079 | INFO     | mean y: 2240758.1747851004
[2025-07-25 20:01:37] 2025-07-25 22:48:52,080 | INFO     | -- intersect: -9334411423.375582
[2025-07-25 20:01:37] 2025-07-25 22:48:52,080 | INFO     | intersect: -9334411423.375582
[2025-07-25 20:01:37] 2025-07-25 22:48:52,123 | INFO     | chi2: 6.689443962646555
[2025-07-25 20:01:37] 2025-07-25 22:48:52,123 | INFO     | current chi2=6.689443962646555 (change=24.846711153700703 %)
[2025-07-25 20:01:37] 2025-07-25 22:48:52,124 | INFO     | left removable region: 20
[2025-07-25 20:01:37] 2025-07-25 22:48:52,136 | INFO     | sum of square deviations: 98360127196.97963
[2025-07-25 20:01:37] 2025-07-25 22:48:52,433 | INFO     | sum of deviations: 459771925825.9766
[2025-07-25 20:01:37] 2025-07-25 22:48:52,434 | INFO     | mean x: 1753462461.5718474
[2025-07-25 20:01:37] 2025-07-25 22:48:52,434 | INFO     | mean y: 2264991.582111437
[2025-07-25 20:01:37] 2025-07-25 22:48:52,434 | INFO     | -- intersect: -8194072648.424538
[2025-07-25 20:01:37] 2025-07-25 22:48:52,435 | INFO     | intersect: -8194072648.424538
[2025-07-25 20:01:37] 2025-07-25 22:48:52,437 | INFO     | chi2: 2.2363859347490544
[2025-07-25 20:01:37] 2025-07-25 22:48:52,438 | INFO     | -- intersect: -8194072648.424538
[2025-07-25 20:01:37] 2025-07-25 22:48:52,438 | INFO     | current memory leak: 4.67 B/s (using 682 data points, chi2=2.24)
[2025-07-25 20:01:37] 2025-07-25 22:48:52,440 | INFO     | could have reported an average CPU frequency of 999 MHz (27 samples)
[2025-07-25 20:01:37] 2025-07-25 22:48:52,440 | INFO     | ..............................
[2025-07-25 20:01:37] 2025-07-25 22:48:52,441 | INFO     | . Timing measurements:
[2025-07-25 20:01:37] 2025-07-25 22:48:52,441 | INFO     | . get job = 1 s
[2025-07-25 20:01:37] 2025-07-25 22:48:52,441 | INFO     | . initial setup = 14 s
[2025-07-25 20:01:37] 2025-07-25 22:48:52,441 | INFO     | . payload setup = 81 s
[2025-07-25 20:01:37] 2025-07-25 22:48:52,441 | INFO     | . stage-in = 2 s
[2025-07-25 20:01:37] 2025-07-25 22:48:52,442 | INFO     | . payload execution = 43248 s
[2025-07-25 20:01:37] 2025-07-25 22:48:52,442 | INFO     | . stage-out = 16 s
[2025-07-25 20:01:37] 2025-07-25 22:48:52,442 | INFO     | . log creation = 2 s
[2025-07-25 20:01:37] 2025-07-25 22:48:52,442 | INFO     | ..............................
[2025-07-25 20:01:37] 2025-07-25 22:48:55,070 | INFO     | PID=1794802 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 20:01:37] 2025-07-25 22:48:55,077 | INFO     | .. there are 50 such processes running
[2025-07-25 20:01:37] 2025-07-25 22:48:55,166 | INFO     | 
[2025-07-25 20:01:37] 2025-07-25 22:48:55,166 | INFO     | job summary report
[2025-07-25 20:01:37] 2025-07-25 22:48:55,166 | INFO     | --------------------------------------------------
[2025-07-25 20:01:37] 2025-07-25 22:48:55,167 | INFO     | PanDA job id: 6744955674
[2025-07-25 20:01:37] 2025-07-25 22:48:55,167 | INFO     | task id: 45743349
[2025-07-25 20:01:37] 2025-07-25 22:48:55,167 | INFO     | errors: (none)
[2025-07-25 20:01:37] 2025-07-25 22:48:55,167 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 20:01:37] 2025-07-25 22:48:55,167 | INFO     | pilot state: finished 
[2025-07-25 20:01:37] 2025-07-25 22:48:55,168 | INFO     | transexitcode: 0
[2025-07-25 20:01:37] 2025-07-25 22:48:55,168 | INFO     | exeerrorcode: 0
[2025-07-25 20:01:37] 2025-07-25 22:48:55,168 | INFO     | exeerrordiag: 
[2025-07-25 20:01:37] 2025-07-25 22:48:55,168 | INFO     | exitcode: 0
[2025-07-25 20:01:37] 2025-07-25 22:48:55,168 | INFO     | exitmsg: OK
[2025-07-25 20:01:37] 2025-07-25 22:48:55,169 | INFO     | cpuconsumptiontime: 129270 s
[2025-07-25 20:01:37] 2025-07-25 22:48:55,169 | INFO     | nevents: 400
[2025-07-25 20:01:37] 2025-07-25 22:48:55,169 | INFO     | neventsw: 0
[2025-07-25 20:01:37] 2025-07-25 22:48:55,169 | INFO     | pid: 1833004
[2025-07-25 20:01:37] 2025-07-25 22:48:55,169 | INFO     | pgrp: 1833004
[2025-07-25 20:01:37] 2025-07-25 22:48:55,170 | INFO     | corecount: 12
[2025-07-25 20:01:37] 2025-07-25 22:48:55,170 | INFO     | event service: False
[2025-07-25 20:01:37] 2025-07-25 22:48:55,170 | INFO     | sizes: {0: 2396645, 2: 2397246, 4: 2397358, 5: 2397358, 7: 2397585, 9: 2397613, 22: 2397769, 34: 2397797, 45: 2397825, 57: 2397853, 65: 2398143, 70: 2398451, 43340
[2025-07-25 20:01:37] 2025-07-25 22:48:55,170 | INFO     | --------------------------------------------------
[2025-07-25 20:01:37] 2025-07-25 22:48:55,170 | INFO     | 
[2025-07-25 20:01:37] 2025-07-25 22:48:55,171 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-07-25 20:01:37] 2025-07-25 22:48:55,436 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,437 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,437 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,437 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,438 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,438 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,438 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,438 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,438 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,439 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,439 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,439 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,454 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,454 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,455 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,455 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,455 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,455 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 20:01:37] 2025-07-25 22:48:55,455 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,456 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 20:01:37] 2025-07-25 22:48:55,456 | INFO     | job 6744955674 has completed (purged errors)
[2025-07-25 20:01:37] 2025-07-25 22:48:55,456 | INFO     | overall cleanup function is called
[2025-07-25 20:01:37] 2025-07-25 22:48:56,478 | INFO     | --- collectZombieJob: --- 10, [1833004]
[2025-07-25 20:01:37] 2025-07-25 22:48:56,479 | INFO     | zombie collector waiting for pid 1833004
[2025-07-25 20:01:37] 2025-07-25 22:48:56,479 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 20:01:37] 2025-07-25 22:48:56,480 | INFO     | collected zombie processes
[2025-07-25 20:01:37] 2025-07-25 22:48:56,480 | INFO     | will attempt to kill all subprocesses of pid=1833004
[2025-07-25 20:01:37] 2025-07-25 22:49:04,420 | INFO     | process IDs to be killed: [1833004] (in reverse order)
[2025-07-25 20:01:37] 2025-07-25 22:49:05,376 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 20:01:37] 2025-07-25 22:49:05,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 20:01:37] 2025-07-25 22:49:05,656 | INFO     | did not find any defunct processes belonging to 1833004
[2025-07-25 20:01:37] 2025-07-25 22:49:05,950 | INFO     | did not find any defunct processes belonging to 1833004
[2025-07-25 20:01:37] 2025-07-25 22:49:05,971 | INFO     | ready for new job
[2025-07-25 20:01:37] 2025-07-25 22:49:05,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 20:01:37] 2025-07-25 22:49:05,997 | INFO     | ***************************************
[2025-07-25 20:01:37] 2025-07-25 22:49:05,997 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 20:01:37] 2025-07-25 22:49:05,998 | INFO     | ***************************************
[2025-07-25 20:01:37] 2025-07-25 22:49:05,998 | INFO     | 
[2025-07-25 20:01:37] 2025-07-25 22:49:06,106 | INFO     | architecture information:
[2025-07-25 20:01:37] 2025-07-25 22:49:06,113 | INFO     | executing command: cat /etc/os-release
[2025-07-25 20:01:37] 2025-07-25 22:49:06,292 | INFO     | cat /etc/os-release:
[2025-07-25 20:01:37] NAME="CentOS Linux"
[2025-07-25 20:01:37] VERSION="7 (Core)"
[2025-07-25 20:01:37] ID="centos"
[2025-07-25 20:01:37] ID_LIKE="rhel fedora"
[2025-07-25 20:01:37] VERSION_ID="7"
[2025-07-25 20:01:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 20:01:37] ANSI_COLOR="0;31"
[2025-07-25 20:01:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 20:01:37] HOME_URL="https://www.centos.org/"
[2025-07-25 20:01:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 20:01:37] 
[2025-07-25 20:01:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 20:01:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 20:01:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 20:01:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 20:01:37] 
[2025-07-25 20:01:37] 2025-07-25 22:49:06,293 | INFO     | ***************************************
[2025-07-25 20:01:37] 2025-07-25 22:49:06,797 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-07-25 20:01:37] 2025-07-25 22:49:06,915 | INFO     | sufficient remaining disk space (75218550784 B)
[2025-07-25 20:01:37] 2025-07-25 22:49:06,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 20:01:37] 2025-07-25 22:49:06,917 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 20:01:37] 2025-07-25 22:49:06,917 | INFO     | update_server=False
[2025-07-25 20:01:37] 2025-07-25 22:49:06,917 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 20:01:37] 2025-07-25 22:49:06,976 | INFO     | all data control threads have been joined
[2025-07-25 20:01:37] 2025-07-25 22:49:07,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 20:01:37] 2025-07-25 22:49:07,273 | INFO     | aborting loop
[2025-07-25 20:01:37] 2025-07-25 22:49:07,588 | INFO     | all job control threads have been joined
[2025-07-25 20:01:37] 2025-07-25 22:49:07,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 20:01:37] 2025-07-25 22:49:07,939 | INFO     | [job] retrieve thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:07,960 | INFO     | [payload] failed_post thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:07,982 | INFO     | [data] control thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:08,280 | INFO     | [job] job monitor thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:08,299 | INFO     | all payload control threads have been joined
[2025-07-25 20:01:37] 2025-07-25 22:49:08,420 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 20:01:37] 2025-07-25 22:49:08,481 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:08,585 | INFO     | [job] validate thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:08,586 | INFO     | [data] copytool_in thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:08,599 | INFO     | [job] control thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:08,709 | INFO     | [payload] validate_post thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:08,994 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:09,000 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:09,007 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:09,012 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 20:01:37] 2025-07-25 22:49:09,306 | INFO     | [payload] control thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:09,427 | INFO     | [job] queue monitor thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:09,743 | INFO     | [data] copytool_out thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:13,038 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 20:01:37] 2025-07-25 22:49:14,581 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140673928791872)>', '<ExcThread(monitor, started 140673441318656)>']
[2025-07-25 20:01:37] 2025-07-25 22:49:19,619 | INFO     | all workflow threads have been joined
[2025-07-25 20:01:37] 2025-07-25 22:49:19,624 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 20:01:37] 2025-07-25 22:49:19,624 | INFO     | traces error code: 0
[2025-07-25 20:01:37] 2025-07-25 22:49:19,625 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 20:01:37] 2025-07-25 22:49:39,476 | INFO     | PID=1794802 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 20:01:37] 2025-07-25 22:49:39,513 | INFO     | .. there are 50 such processes running
[2025-07-25 20:01:37] 2025-07-25 22:49:39,514 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 20:01:37] 2025-07-25 22:49:39,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 20:01:37] 2025-07-25 22:49:39,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 20:01:37] 2025-07-25 22:49:39,515 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 20:01:37] 2025-07-25 22:49:39,515 | INFO     | [monitor] control thread has ended
[2025-07-25 20:01:37] 2025-07-25 22:49:41,144 [wrapper] ==== pilot stdout END ====
[2025-07-25 20:01:37] 2025-07-25 22:49:41,168 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 20:01:37] 2025-07-25 22:49:41,211 [wrapper] pilotpid: 1794802
[2025-07-25 20:01:37] 2025-07-25 22:49:41,235 [wrapper] Pilot exit status: 0
[2025-07-25 20:01:37] 2025-07-25 22:49:41,438 [wrapper] pandaids: 6744955674
[2025-07-25 20:01:37] 2025-07-25 22:49:42,049 [wrapper] cleanup supervisor_pilot 3568315 1794803
[2025-07-25 20:01:37] 2025-07-25 22:49:42,060 [wrapper] Test setup, not cleaning
[2025-07-25 20:01:37] 2025-07-25 22:49:42,067 [wrapper] apfmon messages muted
[2025-07-25 20:01:37] 2025-07-25 22:49:42,073 [wrapper] ==== wrapper stdout END ====
[2025-07-25 20:01:37] 2025-07-25 22:49:42,079 [wrapper] ==== wrapper stderr END ====
[2025-07-25 20:01:37]  *** Error codes and diagnostics ***
[2025-07-25 20:01:37]     "exeErrorCode": 0,
[2025-07-25 20:01:37]     "exeErrorDiag": "",
[2025-07-25 20:01:37]     "pilotErrorCode": 0,
[2025-07-25 20:01:37]     "pilotErrorDiag": "",
[2025-07-25 20:01:37]  *** Listing of results directory ***
[2025-07-25 20:01:37] total 356372
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 03:34 pilot3.tar.gz
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 03:42 queuedata.json
[2025-07-25 20:01:37] -rwx------. 1 boincer umatlas     36292 Jul 25 03:43 runpilot2-wrapper.sh
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas       100 Jul 25 06:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 20:01:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 06:41 run_atlas
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas       105 Jul 25 06:41 job.xml
[2025-07-25 20:01:37] -rw-r--r--. 2 boincer umatlas 146640282 Jul 25 06:41 EVNT.45743347._001155.pool.root.1
[2025-07-25 20:01:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 06:41 start_atlas.sh
[2025-07-25 20:01:37] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 06:41 shared
[2025-07-25 20:01:37] -rw-r--r--. 2 boincer umatlas    542892 Jul 25 06:41 input.tar.gz
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas         0 Jul 25 06:41 boinc_lockfile
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 06:41 pandaJob.out
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas    979717 Jul 25 06:43 agis_schedconf.cvmfs.json
[2025-07-25 20:01:37] drwx------. 4 boincer umatlas      4096 Jul 25 06:43 pilot3
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas 208615173 Jul 25 18:43 HITS.45743349._018052.pool.root.1
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas       531 Jul 25 18:44 boinc_task_state.xml
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas      1042 Jul 25 18:47 memory_monitor_summary.json
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas   1593052 Jul 25 18:47 agis_ddmendpoints.agis.ALL.json
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas    630033 Jul 25 18:47 log.45743349._018052.job.log.tgz.1
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas      7838 Jul 25 18:48 heartbeat.json
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas        96 Jul 25 18:48 pilot_heartbeat.json
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas       823 Jul 25 18:49 pilotlog.txt
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas   2267751 Jul 25 18:49 log.45743349._018052.job.log.1
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas       357 Jul 25 18:49 output.list
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas       620 Jul 25 18:49 runtime_log
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas   2918400 Jul 25 18:49 result.tar.gz
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas      8673 Jul 25 18:49 runtime_log.err
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas       661 Jul 25 18:49 EUgMDmKGSz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmo0OLDm4B1GHn.diag
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas      6856 Jul 25 20:01 init_data.xml
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas        28 Jul 25 20:01 wrapper_checkpoint.txt
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 20:01 boinc_mmap_file
[2025-07-25 20:01:37] -rw-r--r--. 1 boincer umatlas     21362 Jul 25 20:01 stderr.txt
[2025-07-25 20:01:37] HITS file was successfully produced:
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas 208615173 Jul 25 18:43 shared/HITS.pool.root.1
[2025-07-25 20:01:37]  *** Contents of shared directory: ***
[2025-07-25 20:01:37] total 350336
[2025-07-25 20:01:37] -rw-r--r--. 2 boincer umatlas 146640282 Jul 25 06:41 ATLAS.root_0
[2025-07-25 20:01:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 06:41 start_atlas.sh
[2025-07-25 20:01:37] -rw-r--r--. 2 boincer umatlas    542892 Jul 25 06:41 input.tar.gz
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas 208615173 Jul 25 18:43 HITS.pool.root.1
[2025-07-25 20:01:37] -rw-------. 1 boincer umatlas   2918400 Jul 25 18:49 result.tar.gz
20:01:38 (1778083): run_atlas exited; CPU time 132990.610683
20:01:38 (1778083): called boinc_finish(0)

</stderr_txt>
]]>

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