Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:36:13 (3484098): wrapper (7.7.26015): starting
08:36:13 (3484098): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 08:36:13] Arguments: --nthreads 12
[2025-07-25 08:36:13] Threads: 12
[2025-07-25 08:36:13] Checking for CVMFS
[2025-07-25 08:36:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 08:36:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 08:36:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 08:36:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 08:36:13] 2.12.6.0 1364387 15494 329204 148741 3 355 27357687 32935936 13099 16776704 0 42930479 99.754 66494594 31472 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 08:36:13] CVMFS is ok
[2025-07-25 08:36:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 08:36:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 08:36:13] Further information can be found at the LHC@home message board.
[2025-07-25 08:36:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 08:36:13] Checking for apptainer binary...
[2025-07-25 08:36:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 08:36:13] Running /usr/bin/apptainer --version
[2025-07-25 08:36:13] apptainer version 1.4.1-1.el9
[2025-07-25 08:36:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 08:36:13] c6-2-29-2.aglt2.org
[2025-07-25 08:36:13] apptainer works
[2025-07-25 08:36:13] Set ATHENA_PROC_NUMBER=12
[2025-07-25 08:36:13] Set ATHENA_CORE_NUMBER=12
[2025-07-25 08:36:14] Starting ATLAS job with PandaID=6744951816
[2025-07-25 08:36:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 10:34:24]  *** The last 200 lines of the pilot log: ***
[2025-07-25 10:34:24] 2025-07-25 14:33:51,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 10:34:24] 2025-07-25 14:33:51,937 | INFO     | PID=3488583 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-25 10:34:24] 2025-07-25 14:33:51,938 | INFO     | .. there are 19 such processes running
[2025-07-25 10:34:24] 2025-07-25 14:33:52,545 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 10:34:24] 2025-07-25 14:33:52,563 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3072.269464285713
[2025-07-25 10:34:24] 2025-07-25 14:33:52,572 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744951816/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 10:34:24] 2025-07-25 14:33:52,572 | INFO     | extracted standard info from prmon json
[2025-07-25 10:34:24] 2025-07-25 14:33:52,573 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 10:34:24] 2025-07-25 14:33:52,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 10:34:24] 2025-07-25 14:33:52,573 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 10:34:24] 2025-07-25 14:33:52,573 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 10:34:24] 2025-07-25 14:33:52,575 | INFO     | fitting pss+swap vs Time
[2025-07-25 10:34:24] 2025-07-25 14:33:52,575 | INFO     | sum of square deviations: 471549299.5304342
[2025-07-25 10:34:24] 2025-07-25 14:33:52,576 | INFO     | sum of deviations: -9295595897.591309
[2025-07-25 10:34:24] 2025-07-25 14:33:52,576 | INFO     | mean x: 1753450492.2869565
[2025-07-25 10:34:24] 2025-07-25 14:33:52,576 | INFO     | mean y: 2439343.139130435
[2025-07-25 10:34:24] 2025-07-25 14:33:52,576 | INFO     | -- intersect: 34568002729.53987
[2025-07-25 10:34:24] 2025-07-25 14:33:52,576 | INFO     | intersect: 34568002729.53987
[2025-07-25 10:34:24] 2025-07-25 14:33:52,576 | INFO     | chi2: 2.0692434316298067
[2025-07-25 10:34:24] 2025-07-25 14:33:52,577 | INFO     | sum of square deviations: 412683841.6000002
[2025-07-25 10:34:24] 2025-07-25 14:33:52,577 | INFO     | sum of deviations: -6062240044.199995
[2025-07-25 10:34:24] 2025-07-25 14:33:52,577 | INFO     | mean x: 1753450339.8
[2025-07-25 10:34:24] 2025-07-25 14:33:52,577 | INFO     | mean y: 2447589.8545454545
[2025-07-25 10:34:24] 2025-07-25 14:33:52,577 | INFO     | -- intersect: 25760269423.244312
[2025-07-25 10:34:24] 2025-07-25 14:33:52,577 | INFO     | intersect: 25760269423.244312
[2025-07-25 10:34:24] 2025-07-25 14:33:52,577 | INFO     | chi2: 2.051162900148416
[2025-07-25 10:34:24] 2025-07-25 14:33:52,578 | INFO     | current chi2=2.051162900148416 (change=0.8737749848576263 %)
[2025-07-25 10:34:24] 2025-07-25 14:33:52,578 | INFO     | right removable region: 109
[2025-07-25 10:34:24] 2025-07-25 14:33:52,578 | INFO     | sum of square deviations: 412663711.6000002
[2025-07-25 10:34:24] 2025-07-25 14:33:52,578 | INFO     | sum of deviations: -28916344857.000004
[2025-07-25 10:34:24] 2025-07-25 14:33:52,578 | INFO     | mean x: 1753450644.8
[2025-07-25 10:34:24] 2025-07-25 14:33:52,578 | INFO     | mean y: 2489439.4545454546
[2025-07-25 10:34:24] 2025-07-25 14:33:52,578 | INFO     | -- intersect: 122871019211.9808
[2025-07-25 10:34:24] 2025-07-25 14:33:52,579 | INFO     | intersect: 122871019211.9808
[2025-07-25 10:34:24] 2025-07-25 14:33:52,579 | INFO     | chi2: 0.3149204745036599
[2025-07-25 10:34:24] 2025-07-25 14:33:52,579 | INFO     | current chi2=0.3149204745036599 (change=84.78088804391575 %)
[2025-07-25 10:34:24] 2025-07-25 14:33:52,579 | INFO     | sum of square deviations: 358894498.62857115
[2025-07-25 10:34:24] 2025-07-25 14:33:52,579 | INFO     | sum of deviations: -28467005268.771435
[2025-07-25 10:34:24] 2025-07-25 14:33:52,579 | INFO     | mean x: 1753450797.3142858
[2025-07-25 10:34:24] 2025-07-25 14:33:52,579 | INFO     | mean y: 2487981.4476190475
[2025-07-25 10:34:24] 2025-07-25 14:33:52,580 | INFO     | -- intersect: 139083731289.4874
[2025-07-25 10:34:24] 2025-07-25 14:33:52,580 | INFO     | intersect: 139083731289.4874
[2025-07-25 10:34:24] 2025-07-25 14:33:52,580 | INFO     | chi2: 0.2646034133762734
[2025-07-25 10:34:24] 2025-07-25 14:33:52,580 | INFO     | current chi2=0.2646034133762734 (change=15.977703960560277 %)
[2025-07-25 10:34:24] 2025-07-25 14:33:52,580 | INFO     | left removable region: 20
[2025-07-25 10:34:24] 2025-07-25 14:33:52,580 | INFO     | sum of square deviations: 218524834.49438196
[2025-07-25 10:34:24] 2025-07-25 14:33:52,580 | INFO     | sum of deviations: -16846267566.842693
[2025-07-25 10:34:24] 2025-07-25 14:33:52,580 | INFO     | mean x: 1753450919.3595505
[2025-07-25 10:34:24] 2025-07-25 14:33:52,580 | INFO     | mean y: 2471569.9325842694
[2025-07-25 10:34:24] 2025-07-25 14:33:52,581 | INFO     | -- intersect: 135177512069.12453
[2025-07-25 10:34:24] 2025-07-25 14:33:52,581 | INFO     | intersect: 135177512069.12453
[2025-07-25 10:34:24] 2025-07-25 14:33:52,581 | INFO     | chi2: 0.23300669971765114
[2025-07-25 10:34:24] 2025-07-25 14:33:52,581 | INFO     | -- intersect: 135177512069.12453
[2025-07-25 10:34:24] 2025-07-25 14:33:52,581 | INFO     | current memory leak: -77.09 B/s (using 89 data points, chi2=0.23)
[2025-07-25 10:34:24] 2025-07-25 14:33:52,581 | INFO     | could have reported an average CPU frequency of 2834 MHz (7 samples)
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | ..............................
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | . Timing measurements:
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | . get job = 0 s
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | . initial setup = 2 s
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | . payload setup = 7 s
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | . stage-in = 0 s
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | . payload execution = 7011 s
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | . stage-out = 0 s
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | . log creation = 0 s
[2025-07-25 10:34:24] 2025-07-25 14:33:52,582 | INFO     | ..............................
[2025-07-25 10:34:24] 2025-07-25 14:33:52,657 | INFO     | 
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | job summary report
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | --------------------------------------------------
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | PanDA job id: 6744951816
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | task id: 45743349
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | errors: (none)
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | pilot state: finished 
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | transexitcode: 0
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | exeerrorcode: 0
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | exeerrordiag: 
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | exitcode: 0
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | exitmsg: OK
[2025-07-25 10:34:24] 2025-07-25 14:33:52,658 | INFO     | cpuconsumptiontime: 50606 s
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | nevents: 400
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | neventsw: 0
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | pid: 3495204
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | pgrp: 3495204
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | corecount: 12
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | event service: False
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | sizes: {0: 2397422, 5: 2397684, 11: 2397740, 7022: 2424901, 7024: 2433899, 7026: 2433955, 7031: 2434277}
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | --------------------------------------------------
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | 
[2025-07-25 10:34:24] 2025-07-25 14:33:52,659 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 10:34:24] 2025-07-25 14:33:52,680 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,681 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,682 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 10:34:24] 2025-07-25 14:33:52,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,682 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 10:34:24] 2025-07-25 14:33:52,682 | INFO     | job 6744951816 has completed (purged errors)
[2025-07-25 10:34:24] 2025-07-25 14:33:52,682 | INFO     | overall cleanup function is called
[2025-07-25 10:34:24] 2025-07-25 14:33:53,690 | INFO     | --- collectZombieJob: --- 10, [3495204]
[2025-07-25 10:34:24] 2025-07-25 14:33:53,690 | INFO     | zombie collector waiting for pid 3495204
[2025-07-25 10:34:24] 2025-07-25 14:33:53,690 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 10:34:24] 2025-07-25 14:33:53,690 | INFO     | collected zombie processes
[2025-07-25 10:34:24] 2025-07-25 14:33:53,690 | INFO     | will attempt to kill all subprocesses of pid=3495204
[2025-07-25 10:34:24] 2025-07-25 14:33:53,940 | INFO     | process IDs to be killed: [3495204] (in reverse order)
[2025-07-25 10:34:24] 2025-07-25 14:33:54,006 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 10:34:24] 2025-07-25 14:33:54,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 10:34:24] 2025-07-25 14:33:54,017 | INFO     | did not find any defunct processes belonging to 3495204
[2025-07-25 10:34:24] 2025-07-25 14:33:54,027 | INFO     | did not find any defunct processes belonging to 3495204
[2025-07-25 10:34:24] 2025-07-25 14:33:54,028 | INFO     | ready for new job
[2025-07-25 10:34:24] 2025-07-25 14:33:54,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 10:34:24] 2025-07-25 14:33:54,029 | INFO     | ***************************************
[2025-07-25 10:34:24] 2025-07-25 14:33:54,030 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 10:34:24] 2025-07-25 14:33:54,030 | INFO     | ***************************************
[2025-07-25 10:34:24] 2025-07-25 14:33:54,030 | INFO     | 
[2025-07-25 10:34:24] 2025-07-25 14:33:54,045 | INFO     | architecture information:
[2025-07-25 10:34:24] 2025-07-25 14:33:54,046 | INFO     | executing command: cat /etc/os-release
[2025-07-25 10:34:24] 2025-07-25 14:33:54,058 | INFO     | cat /etc/os-release:
[2025-07-25 10:34:24] NAME="CentOS Linux"
[2025-07-25 10:34:24] VERSION="7 (Core)"
[2025-07-25 10:34:24] ID="centos"
[2025-07-25 10:34:24] ID_LIKE="rhel fedora"
[2025-07-25 10:34:24] VERSION_ID="7"
[2025-07-25 10:34:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 10:34:24] ANSI_COLOR="0;31"
[2025-07-25 10:34:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 10:34:24] HOME_URL="https://www.centos.org/"
[2025-07-25 10:34:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 10:34:24] 
[2025-07-25 10:34:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 10:34:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 10:34:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 10:34:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 10:34:24] 
[2025-07-25 10:34:24] 2025-07-25 14:33:54,058 | INFO     | ***************************************
[2025-07-25 10:34:24] 2025-07-25 14:33:54,561 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 10:34:24] 2025-07-25 14:33:54,573 | INFO     | sufficient remaining disk space (76548145152 B)
[2025-07-25 10:34:24] 2025-07-25 14:33:54,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 10:34:24] 2025-07-25 14:33:54,573 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 10:34:24] 2025-07-25 14:33:54,573 | INFO     | update_server=False
[2025-07-25 10:34:24] 2025-07-25 14:33:54,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 10:34:24] 2025-07-25 14:33:54,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 10:34:24] 2025-07-25 14:33:54,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 10:34:24] 2025-07-25 14:33:54,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 10:34:24] 2025-07-25 14:33:55,167 | INFO     | all payload control threads have been joined
[2025-07-25 10:34:24] 2025-07-25 14:33:55,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 10:34:24] 2025-07-25 14:33:55,171 | INFO     | aborting loop
[2025-07-25 10:34:24] 2025-07-25 14:33:55,288 | INFO     | all data control threads have been joined
[2025-07-25 10:34:24] 2025-07-25 14:33:55,578 | INFO     | [job] retrieve thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:55,579 | INFO     | [job] queue monitor thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:55,706 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:55,725 | INFO     | [payload] failed_post thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:55,854 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:55,937 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:56,100 | INFO     | [job] validate thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:56,165 | INFO     | all job control threads have been joined
[2025-07-25 10:34:24] 2025-07-25 14:33:56,172 | INFO     | [payload] control thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:56,176 | INFO     | [job] job monitor thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:56,293 | INFO     | [data] control thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:56,579 | INFO     | [data] copytool_out thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:56,636 | INFO     | [payload] validate_post thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:56,780 | INFO     | [data] copytool_in thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:57,170 | INFO     | [job] control thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:33:58,579 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:34:05,201 | INFO     | job.realtimelogging is not enabled
[2025-07-25 10:34:24] 2025-07-25 14:34:06,206 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 10:34:24] 2025-07-25 14:34:07,083 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663771543360)>', '<ExcThread(monitor, started 139663490647808)>']
[2025-07-25 10:34:24] 2025-07-25 14:34:12,108 | INFO     | all workflow threads have been joined
[2025-07-25 10:34:24] 2025-07-25 14:34:12,108 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 10:34:24] 2025-07-25 14:34:12,108 | INFO     | traces error code: 0
[2025-07-25 10:34:24] 2025-07-25 14:34:12,108 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 10:34:24] 2025-07-25 14:34:24,310 | INFO     | PID=3488583 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 10:34:24] 2025-07-25 14:34:24,310 | INFO     | .. there are 19 such processes running
[2025-07-25 10:34:24] 2025-07-25 14:34:24,310 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 10:34:24] 2025-07-25 14:34:24,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 10:34:24] 2025-07-25 14:34:24,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 10:34:24] 2025-07-25 14:34:24,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 10:34:24] 2025-07-25 14:34:24,310 | INFO     | [monitor] control thread has ended
[2025-07-25 10:34:24] 2025-07-25 14:34:24,459 [wrapper] ==== pilot stdout END ====
[2025-07-25 10:34:24] 2025-07-25 14:34:24,463 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 10:34:24] 2025-07-25 14:34:24,466 [wrapper] pilotpid: 3488583
[2025-07-25 10:34:24] 2025-07-25 14:34:24,469 [wrapper] Pilot exit status: 0
[2025-07-25 10:34:24] 2025-07-25 14:34:24,481 [wrapper] pandaids: 6744951816
[2025-07-25 10:34:24] 2025-07-25 14:34:24,543 [wrapper] cleanup supervisor_pilot 3710900 3488584
[2025-07-25 10:34:24] 2025-07-25 14:34:24,547 [wrapper] Test setup, not cleaning
[2025-07-25 10:34:24] 2025-07-25 14:34:24,550 [wrapper] apfmon messages muted
[2025-07-25 10:34:24] 2025-07-25 14:34:24,553 [wrapper] ==== wrapper stdout END ====
[2025-07-25 10:34:24] 2025-07-25 14:34:24,557 [wrapper] ==== wrapper stderr END ====
[2025-07-25 10:34:24]  *** Error codes and diagnostics ***
[2025-07-25 10:34:24]     "exeErrorCode": 0,
[2025-07-25 10:34:24]     "exeErrorDiag": "",
[2025-07-25 10:34:24]     "pilotErrorCode": 0,
[2025-07-25 10:34:24]     "pilotErrorDiag": "",
[2025-07-25 10:34:24]  *** Listing of results directory ***
[2025-07-25 10:34:24] total 351920
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 00:16 pilot3.tar.gz
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 00:24 queuedata.json
[2025-07-25 10:34:24] -rwx------. 1 boincer umatlas     36292 Jul 25 00:24 runpilot2-wrapper.sh
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas       100 Jul 25 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 10:34:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 08:36 run_atlas
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas       105 Jul 25 08:36 job.xml
[2025-07-25 10:34:24] -rw-r--r--. 2 boincer umatlas 145445675 Jul 25 08:36 EVNT.45743347._000896.pool.root.1
[2025-07-25 10:34:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 08:36 start_atlas.sh
[2025-07-25 10:34:24] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 08:36 shared
[2025-07-25 10:34:24] -rw-r--r--. 2 boincer umatlas    542898 Jul 25 08:36 input.tar.gz
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas         0 Jul 25 08:36 boinc_lockfile
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas      2561 Jul 25 08:36 pandaJob.out
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas    979309 Jul 25 08:36 agis_schedconf.cvmfs.json
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas   1593052 Jul 25 08:36 agis_ddmendpoints.agis.ALL.json
[2025-07-25 10:34:24] drwx------. 4 boincer umatlas      4096 Jul 25 08:36 pilot3
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas      6841 Jul 25 10:28 init_data.xml
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas 209036117 Jul 25 10:33 HITS.45743349._016032.pool.root.1
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas       529 Jul 25 10:33 boinc_task_state.xml
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas      1032 Jul 25 10:33 memory_monitor_summary.json
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas        95 Jul 25 10:33 pilot_heartbeat.json
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas    384211 Jul 25 10:33 log.45743349._016032.job.log.tgz.1
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas      7813 Jul 25 10:33 heartbeat.json
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 10:34 boinc_mmap_file
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas        27 Jul 25 10:34 wrapper_checkpoint.txt
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas       823 Jul 25 10:34 pilotlog.txt
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas    618647 Jul 25 10:34 log.45743349._016032.job.log.1
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas       357 Jul 25 10:34 output.list
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas       620 Jul 25 10:34 runtime_log
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas   1024000 Jul 25 10:34 result.tar.gz
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas      8667 Jul 25 10:34 runtime_log.err
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas       654 Jul 25 10:34 gU4NDmKAPz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmYRyKDmbzfIAn.diag
[2025-07-25 10:34:24] -rw-r--r--. 1 boincer umatlas     21270 Jul 25 10:34 stderr.txt
[2025-07-25 10:34:24] HITS file was successfully produced:
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas 209036117 Jul 25 10:33 shared/HITS.pool.root.1
[2025-07-25 10:34:24]  *** Contents of shared directory: ***
[2025-07-25 10:34:24] total 347732
[2025-07-25 10:34:24] -rw-r--r--. 2 boincer umatlas 145445675 Jul 25 08:36 ATLAS.root_0
[2025-07-25 10:34:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 08:36 start_atlas.sh
[2025-07-25 10:34:24] -rw-r--r--. 2 boincer umatlas    542898 Jul 25 08:36 input.tar.gz
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas 209036117 Jul 25 10:33 HITS.pool.root.1
[2025-07-25 10:34:24] -rw-------. 1 boincer umatlas   1024000 Jul 25 10:34 result.tar.gz
10:34:26 (3484098): run_atlas exited; CPU time 50756.414578
10:34:26 (3484098): called boinc_finish(0)

</stderr_txt>
]]>

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