Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:52:44 (4171182): wrapper (7.7.26015): starting
06:52:44 (4171182): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 06:52:44] Arguments: --nthreads 8
[2025-07-25 06:52:44] Threads: 8
[2025-07-25 06:52:44] Checking for CVMFS
[2025-07-25 06:52:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 06:52:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 06:52:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 06:52:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 06:52:45] 2.12.6.0 1904412 15405 388228 148738 2 665 26524080 32503808 25551 16776704 0 90295913 99.511 131922032 18501 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 06:52:45] CVMFS is ok
[2025-07-25 06:52:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 06:52:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 06:52:45] Further information can be found at the LHC@home message board.
[2025-07-25 06:52:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 06:52:45] Checking for apptainer binary...
[2025-07-25 06:52:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 06:52:45] Running /usr/bin/apptainer --version
[2025-07-25 06:52:45] apptainer version 1.4.1-1.el9
[2025-07-25 06:52:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 06:52:45] c7-7-36.aglt2.org
[2025-07-25 06:52:45] apptainer works
[2025-07-25 06:52:45] Set ATHENA_PROC_NUMBER=8
[2025-07-25 06:52:45] Set ATHENA_CORE_NUMBER=8
[2025-07-25 06:52:45] Starting ATLAS job with PandaID=6744944539
[2025-07-25 06:52:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:40:08 (4171182): BOINC client no longer exists - exiting
10:40:08 (4171182): timer handler: client dead, exiting
10:48:17 (1287585): wrapper (7.7.26015): starting
10:48:17 (1287585): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 10:48:17] Arguments: --nthreads 8
[2025-07-25 10:48:17] Threads: 8
[2025-07-25 10:48:17] This job has been restarted, cleaning up previous attempt
[2025-07-25 10:48:17] Checking for CVMFS
[2025-07-25 10:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 10:48:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 10:48:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 10:48:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 10:48:17] 2.12.6.0 1904412 15640 381044 148744 3 580 30489998 32503808 29280 16776704 0 92038137 99.515 133387037 18532 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 10:48:17] CVMFS is ok
[2025-07-25 10:48:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 10:48:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 10:48:17] Further information can be found at the LHC@home message board.
[2025-07-25 10:48:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 10:48:17] Checking for apptainer binary...
[2025-07-25 10:48:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 10:48:17] Running /usr/bin/apptainer --version
[2025-07-25 10:48:17] apptainer version 1.4.1-1.el9
[2025-07-25 10:48:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 10:48:17] c7-7-36.aglt2.org
[2025-07-25 10:48:17] apptainer works
[2025-07-25 10:48:17] Set ATHENA_PROC_NUMBER=8
[2025-07-25 10:48:17] Set ATHENA_CORE_NUMBER=8
[2025-07-25 10:48:18] Starting ATLAS job with PandaID=6744944539
[2025-07-25 10:48:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 15:21:05]  *** The last 200 lines of the pilot log: ***
[2025-07-25 15:21:05] 2025-07-25 19:20:30,049 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 15:21:05] 2025-07-25 19:20:30,052 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 15:21:05] 2025-07-25 19:20:30,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 15:21:05] 2025-07-25 19:20:30,057 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 15:21:05] 2025-07-25 19:20:30,082 | INFO     | fitting pss+swap vs Time
[2025-07-25 15:21:05] 2025-07-25 19:20:30,082 | INFO     | sum of square deviations: 5902215690.157301
[2025-07-25 15:21:05] 2025-07-25 19:20:30,094 | INFO     | sum of deviations: 19853308268.123604
[2025-07-25 15:21:05] 2025-07-25 19:20:30,095 | INFO     | mean x: 1753463057.0561798
[2025-07-25 15:21:05] 2025-07-25 19:20:30,095 | INFO     | mean y: 2148773.925093633
[2025-07-25 15:21:05] 2025-07-25 19:20:30,095 | INFO     | -- intersect: -5895982442.55286
[2025-07-25 15:21:05] 2025-07-25 19:20:30,095 | INFO     | intersect: -5895982442.55286
[2025-07-25 15:21:05] 2025-07-25 19:20:30,095 | INFO     | chi2: 2.171292360737326
[2025-07-25 15:21:05] 2025-07-25 19:20:30,096 | INFO     | sum of square deviations: 5576809512.641221
[2025-07-25 15:21:05] 2025-07-25 19:20:30,123 | INFO     | sum of deviations: 33312705126.228985
[2025-07-25 15:21:05] 2025-07-25 19:20:30,123 | INFO     | mean x: 1753462904.557252
[2025-07-25 15:21:05] 2025-07-25 19:20:30,123 | INFO     | mean y: 2154970.9847328244
[2025-07-25 15:21:05] 2025-07-25 19:20:30,123 | INFO     | -- intersect: -10472040455.072067
[2025-07-25 15:21:05] 2025-07-25 19:20:30,123 | INFO     | intersect: -10472040455.072067
[2025-07-25 15:21:05] 2025-07-25 19:20:30,124 | INFO     | chi2: 1.458708849910948
[2025-07-25 15:21:05] 2025-07-25 19:20:30,124 | INFO     | current chi2=1.458708849910948 (change=32.818404546147775 %)
[2025-07-25 15:21:05] 2025-07-25 19:20:30,124 | INFO     | sum of square deviations: 5263589610.124503
[2025-07-25 15:21:05] 2025-07-25 19:20:30,126 | INFO     | sum of deviations: 30927100106.015564
[2025-07-25 15:21:05] 2025-07-25 19:20:30,143 | INFO     | mean x: 1753462752.0583658
[2025-07-25 15:21:05] 2025-07-25 19:20:30,144 | INFO     | mean y: 2153816.13229572
[2025-07-25 15:21:05] 2025-07-25 19:20:30,144 | INFO     | -- intersect: -10300609522.553583
[2025-07-25 15:21:05] 2025-07-25 19:20:30,144 | INFO     | intersect: -10300609522.553583
[2025-07-25 15:21:05] 2025-07-25 19:20:30,144 | INFO     | chi2: 1.4558768990244926
[2025-07-25 15:21:05] 2025-07-25 19:20:30,144 | INFO     | current chi2=1.4558768990244926 (change=0.19414092720615683 %)
[2025-07-25 15:21:05] 2025-07-25 19:20:30,145 | INFO     | right removable region: 256
[2025-07-25 15:21:05] 2025-07-25 19:20:30,145 | INFO     | sum of square deviations: 5576800362.641221
[2025-07-25 15:21:05] 2025-07-25 19:20:30,146 | INFO     | sum of deviations: -13188684946.503819
[2025-07-25 15:21:05] 2025-07-25 19:20:30,146 | INFO     | mean x: 1753463209.557252
[2025-07-25 15:21:05] 2025-07-25 19:20:30,147 | INFO     | mean y: 2164149.6335877865
[2025-07-25 15:21:05] 2025-07-25 19:20:30,147 | INFO     | -- intersect: 4148963807.562061
[2025-07-25 15:21:05] 2025-07-25 19:20:30,147 | INFO     | intersect: 4148963807.562061
[2025-07-25 15:21:05] 2025-07-25 19:20:30,147 | INFO     | chi2: 0.9342911540600759
[2025-07-25 15:21:05] 2025-07-25 19:20:30,147 | INFO     | current chi2=0.9342911540600759 (change=56.97073452868365 %)
[2025-07-25 15:21:05] 2025-07-25 19:20:30,147 | INFO     | sum of square deviations: 5263571310.124503
[2025-07-25 15:21:05] 2025-07-25 19:20:30,149 | INFO     | sum of deviations: -21406915499.891052
[2025-07-25 15:21:05] 2025-07-25 19:20:30,149 | INFO     | mean x: 1753463362.0583658
[2025-07-25 15:21:05] 2025-07-25 19:20:30,149 | INFO     | mean y: 2168122.9260700387
[2025-07-25 15:21:05] 2025-07-25 19:20:30,149 | INFO     | -- intersect: 7133493949.468435
[2025-07-25 15:21:05] 2025-07-25 19:20:30,149 | INFO     | intersect: 7133493949.468435
[2025-07-25 15:21:05] 2025-07-25 19:20:30,150 | INFO     | chi2: 0.853048694068626
[2025-07-25 15:21:05] 2025-07-25 19:20:30,150 | INFO     | current chi2=0.853048694068626 (change=8.695625516564172 %)
[2025-07-25 15:21:05] 2025-07-25 19:20:30,150 | INFO     | left removable region: 20
[2025-07-25 15:21:05] 2025-07-25 19:20:30,150 | INFO     | sum of square deviations: 4075855072.046623
[2025-07-25 15:21:05] 2025-07-25 19:20:30,151 | INFO     | sum of deviations: -5775518247.343219
[2025-07-25 15:21:05] 2025-07-25 19:20:30,151 | INFO     | mean x: 1753463331.5635593
[2025-07-25 15:21:05] 2025-07-25 19:20:30,151 | INFO     | mean y: 2171728.122881356
[2025-07-25 15:21:05] 2025-07-25 19:20:30,152 | INFO     | -- intersect: 2486842867.9157352
[2025-07-25 15:21:05] 2025-07-25 19:20:30,152 | INFO     | intersect: 2486842867.9157352
[2025-07-25 15:21:05] 2025-07-25 19:20:30,152 | INFO     | chi2: 0.11559688006819853
[2025-07-25 15:21:05] 2025-07-25 19:20:30,152 | INFO     | -- intersect: 2486842867.9157352
[2025-07-25 15:21:05] 2025-07-25 19:20:30,152 | INFO     | current memory leak: -1.42 B/s (using 236 data points, chi2=0.12)
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | could have reported an average CPU frequency of 3181 MHz (12 samples)
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | ..............................
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | . Timing measurements:
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | . get job = 0 s
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | . initial setup = 2 s
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | . payload setup = 8 s
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | . stage-in = 0 s
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | . payload execution = 16261 s
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | . stage-out = 3 s
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | . log creation = 0 s
[2025-07-25 15:21:05] 2025-07-25 19:20:30,153 | INFO     | ..............................
[2025-07-25 15:21:05] 2025-07-25 19:20:30,246 | INFO     | 
[2025-07-25 15:21:05] 2025-07-25 19:20:30,246 | INFO     | job summary report
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | --------------------------------------------------
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | PanDA job id: 6744944539
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | task id: 45743349
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | errors: (none)
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | pilot state: finished 
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | transexitcode: 0
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | exeerrorcode: 0
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | exeerrordiag: 
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | exitcode: 0
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | exitmsg: OK
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | cpuconsumptiontime: 36660 s
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | nevents: 400
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | neventsw: 0
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | pid: 1319414
[2025-07-25 15:21:05] 2025-07-25 19:20:30,247 | INFO     | pgrp: 1319414
[2025-07-25 15:21:05] 2025-07-25 19:20:30,248 | INFO     | corecount: 8
[2025-07-25 15:21:05] 2025-07-25 19:20:30,248 | INFO     | event service: False
[2025-07-25 15:21:05] 2025-07-25 19:20:30,248 | INFO     | sizes: {0: 2397302, 1: 2397501, 6: 2397763, 11: 2397791, 16274: 2429711, 16275: 2429710, 16278: 2438892, 16280: 2438948, 16302: 2439142}
[2025-07-25 15:21:05] 2025-07-25 19:20:30,248 | INFO     | --------------------------------------------------
[2025-07-25 15:21:05] 2025-07-25 19:20:30,248 | INFO     | 
[2025-07-25 15:21:05] 2025-07-25 19:20:30,248 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 15:21:05] 2025-07-25 19:20:30,408 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,409 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,409 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,409 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,409 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,409 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,409 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,409 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,410 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 15:21:05] 2025-07-25 19:20:30,411 | INFO     | job 6744944539 has completed (purged errors)
[2025-07-25 15:21:05] 2025-07-25 19:20:30,424 | INFO     | overall cleanup function is called
[2025-07-25 15:21:05] 2025-07-25 19:20:31,445 | INFO     | --- collectZombieJob: --- 10, [1319414]
[2025-07-25 15:21:05] 2025-07-25 19:20:31,446 | INFO     | zombie collector waiting for pid 1319414
[2025-07-25 15:21:05] 2025-07-25 19:20:31,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 15:21:05] 2025-07-25 19:20:31,446 | INFO     | collected zombie processes
[2025-07-25 15:21:05] 2025-07-25 19:20:31,446 | INFO     | will attempt to kill all subprocesses of pid=1319414
[2025-07-25 15:21:05] 2025-07-25 19:20:32,026 | INFO     | process IDs to be killed: [1319414] (in reverse order)
[2025-07-25 15:21:05] 2025-07-25 19:20:32,269 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 15:21:05] 2025-07-25 19:20:32,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 15:21:05] 2025-07-25 19:20:32,352 | INFO     | did not find any defunct processes belonging to 1319414
[2025-07-25 15:21:05] 2025-07-25 19:20:32,497 | INFO     | did not find any defunct processes belonging to 1319414
[2025-07-25 15:21:05] 2025-07-25 19:20:32,497 | INFO     | ready for new job
[2025-07-25 15:21:05] 2025-07-25 19:20:32,497 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 15:21:05] 2025-07-25 19:20:32,519 | INFO     | ***************************************
[2025-07-25 15:21:05] 2025-07-25 19:20:32,519 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 15:21:05] 2025-07-25 19:20:32,519 | INFO     | ***************************************
[2025-07-25 15:21:05] 2025-07-25 19:20:32,519 | INFO     | 
[2025-07-25 15:21:05] 2025-07-25 19:20:32,538 | INFO     | architecture information:
[2025-07-25 15:21:05] 2025-07-25 19:20:32,538 | INFO     | executing command: cat /etc/os-release
[2025-07-25 15:21:05] 2025-07-25 19:20:32,633 | INFO     | cat /etc/os-release:
[2025-07-25 15:21:05] NAME="CentOS Linux"
[2025-07-25 15:21:05] VERSION="7 (Core)"
[2025-07-25 15:21:05] ID="centos"
[2025-07-25 15:21:05] ID_LIKE="rhel fedora"
[2025-07-25 15:21:05] VERSION_ID="7"
[2025-07-25 15:21:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 15:21:05] ANSI_COLOR="0;31"
[2025-07-25 15:21:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 15:21:05] HOME_URL="https://www.centos.org/"
[2025-07-25 15:21:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 15:21:05] 
[2025-07-25 15:21:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 15:21:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 15:21:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 15:21:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 15:21:05] 
[2025-07-25 15:21:05] 2025-07-25 19:20:32,633 | INFO     | ***************************************
[2025-07-25 15:21:05] 2025-07-25 19:20:33,137 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 15:21:05] 2025-07-25 19:20:33,165 | INFO     | sufficient remaining disk space (95820972032 B)
[2025-07-25 15:21:05] 2025-07-25 19:20:33,165 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 15:21:05] 2025-07-25 19:20:33,165 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 15:21:05] 2025-07-25 19:20:33,165 | INFO     | update_server=False
[2025-07-25 15:21:05] 2025-07-25 19:20:33,166 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 15:21:05] 2025-07-25 19:20:33,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 15:21:05] 2025-07-25 19:20:33,166 | INFO     | aborting loop
[2025-07-25 15:21:05] 2025-07-25 19:20:33,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 15:21:05] 2025-07-25 19:20:33,604 | INFO     | all payload control threads have been joined
[2025-07-25 15:21:05] 2025-07-25 19:20:33,794 | INFO     | all job control threads have been joined
[2025-07-25 15:21:05] 2025-07-25 19:20:33,916 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 15:21:05] 2025-07-25 19:20:34,107 | INFO     | all data control threads have been joined
[2025-07-25 15:21:05] 2025-07-25 19:20:34,171 | INFO     | [job] retrieve thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:34,172 | INFO     | [job] job monitor thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:34,174 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:34,256 | INFO     | [payload] validate_post thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:34,464 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:34,610 | INFO     | [payload] control thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:34,796 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:34,801 | INFO     | [job] control thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:34,843 | INFO     | [data] copytool_in thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:35,114 | INFO     | [data] control thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:35,256 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 15:21:05] 2025-07-25 19:20:35,260 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:35,413 | INFO     | [job] validate thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:35,749 | INFO     | [payload] failed_post thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:35,923 | INFO     | [data] copytool_out thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:36,280 | INFO     | [job] queue monitor thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:37,187 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 15:21:05] 2025-07-25 19:20:38,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140027711506240)>', '<ExcThread(monitor, started 140026839021312)>']
[2025-07-25 15:21:05] 2025-07-25 19:20:43,243 | INFO     | all workflow threads have been joined
[2025-07-25 15:21:05] 2025-07-25 19:20:43,244 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 15:21:05] 2025-07-25 19:20:43,244 | INFO     | traces error code: 0
[2025-07-25 15:21:05] 2025-07-25 19:20:43,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 15:21:05] 2025-07-25 19:21:04,148 | INFO     | PID=1298471 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 15:21:05] 2025-07-25 19:21:04,149 | INFO     | .. there are 32 such processes running
[2025-07-25 15:21:05] 2025-07-25 19:21:04,149 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 15:21:05] 2025-07-25 19:21:04,149 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 15:21:05] 2025-07-25 19:21:04,149 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 15:21:05] 2025-07-25 19:21:04,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 15:21:05] 2025-07-25 19:21:04,149 | INFO     | [monitor] control thread has ended
[2025-07-25 15:21:05] 2025-07-25 19:21:04,389 [wrapper] ==== pilot stdout END ====
[2025-07-25 15:21:05] 2025-07-25 19:21:04,394 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 15:21:05] 2025-07-25 19:21:04,396 [wrapper] pilotpid: 1298471
[2025-07-25 15:21:05] 2025-07-25 19:21:04,398 [wrapper] Pilot exit status: 0
[2025-07-25 15:21:05] 2025-07-25 19:21:04,470 [wrapper] pandaids: 6744944539 6744944539
[2025-07-25 15:21:05] 2025-07-25 19:21:04,603 [wrapper] cleanup supervisor_pilot 3136088 1298472
[2025-07-25 15:21:05] 2025-07-25 19:21:04,611 [wrapper] Test setup, not cleaning
[2025-07-25 15:21:05] 2025-07-25 19:21:04,613 [wrapper] apfmon messages muted
[2025-07-25 15:21:05] 2025-07-25 19:21:04,616 [wrapper] ==== wrapper stdout END ====
[2025-07-25 15:21:05] 2025-07-25 19:21:04,618 [wrapper] ==== wrapper stderr END ====
[2025-07-25 15:21:05]  *** Error codes and diagnostics ***
[2025-07-25 15:21:05]     "exeErrorCode": 0,
[2025-07-25 15:21:05]     "exeErrorDiag": "",
[2025-07-25 15:21:05]     "pilotErrorCode": 0,
[2025-07-25 15:21:05]     "pilotErrorDiag": "",
[2025-07-25 15:21:05]  *** Listing of results directory ***
[2025-07-25 15:21:05] total 494528
[2025-07-25 15:21:05] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 20:39 queuedata.json
[2025-07-25 15:21:05] -rwx------. 1 boincer umatlas     36292 Jul 24 20:40 runpilot2-wrapper.sh
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 20:40 pilot3.tar.gz
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas       100 Jul 25 06:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 15:21:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 06:52 run_atlas
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas       105 Jul 25 06:52 job.xml
[2025-07-25 15:21:05] -rw-r--r--. 3 boincer umatlas 145623344 Jul 25 06:52 EVNT.45743347._000743.pool.root.1
[2025-07-25 15:21:05] -rw-r--r--. 3 boincer umatlas 145623344 Jul 25 06:52 ATLAS.root_0
[2025-07-25 15:21:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 06:52 start_atlas.sh
[2025-07-25 15:21:05] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 06:52 shared
[2025-07-25 15:21:05] -rw-r--r--. 2 boincer umatlas    542881 Jul 25 06:52 input.tar.gz
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas         0 Jul 25 06:52 boinc_lockfile
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 10:48 pandaJob.out
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas    979325 Jul 25 10:48 agis_schedconf.cvmfs.json
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas 207618385 Jul 25 15:19 HITS.45743349._013625.pool.root.1
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas      6935 Jul 25 15:19 init_data.xml
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas       531 Jul 25 15:19 boinc_task_state.xml
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas      1050 Jul 25 15:19 memory_monitor_summary.json
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas   1593052 Jul 25 15:20 agis_ddmendpoints.agis.ALL.json
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas    414683 Jul 25 15:20 log.45743349._013625.job.log.tgz.1
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas        96 Jul 25 15:20 pilot_heartbeat.json
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas      7798 Jul 25 15:20 heartbeat.json
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 15:21 boinc_mmap_file
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas        28 Jul 25 15:21 wrapper_checkpoint.txt
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas       823 Jul 25 15:21 pilotlog.txt
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas   1413209 Jul 25 15:21 log.45743349._013625.job.log.1
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas       357 Jul 25 15:21 output.list
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas       620 Jul 25 15:21 runtime_log
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas   1843200 Jul 25 15:21 result.tar.gz
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas      8741 Jul 25 15:21 runtime_log.err
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas       783 Jul 25 15:21 qnAMDmveLz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIKOLDmYBKarm.diag
[2025-07-25 15:21:05] -rw-r--r--. 1 boincer umatlas     23049 Jul 25 15:21 stderr.txt
[2025-07-25 15:21:05] HITS file was successfully produced:
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas 207618385 Jul 25 15:19 shared/HITS.pool.root.1
[2025-07-25 15:21:05]  *** Contents of shared directory: ***
[2025-07-25 15:21:05] total 347320
[2025-07-25 15:21:05] -rw-r--r--. 3 boincer umatlas 145623344 Jul 25 06:52 ATLAS.root_0
[2025-07-25 15:21:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 06:52 start_atlas.sh
[2025-07-25 15:21:05] -rw-r--r--. 2 boincer umatlas    542881 Jul 25 06:52 input.tar.gz
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas 207618385 Jul 25 15:19 HITS.pool.root.1
[2025-07-25 15:21:05] -rw-------. 1 boincer umatlas   1843200 Jul 25 15:21 result.tar.gz
15:21:06 (1287585): run_atlas exited; CPU time 37406.452500
15:21:06 (1287585): called boinc_finish(0)

</stderr_txt>
]]>

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