Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 20:47:35 (6228): Detected: vboxwrapper 26206
2025-07-25 20:47:35 (6228): Detected: BOINC client v8.0.2
2025-07-25 20:47:35 (6228): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-07-25 20:47:35 (6228): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 20:47:36 (6228): Create VM. (boinc_65c64e31c84e878d, slot#2)
2025-07-25 20:47:36 (6228): Setting Memory Size for VM. (4800MB)
2025-07-25 20:47:37 (6228): Setting CPU Count for VM. (8)
2025-07-25 20:47:37 (6228): Setting Chipset Options for VM.
2025-07-25 20:47:37 (6228): Setting Graphics Controller Options for VM.
2025-07-25 20:47:37 (6228): Setting Boot Options for VM.
2025-07-25 20:47:38 (6228): Setting Network Configuration for NAT.
2025-07-25 20:47:38 (6228): Enabling VM Network Access.
2025-07-25 20:47:38 (6228): Disabling USB Support for VM.
2025-07-25 20:47:39 (6228): Disabling COM Port Support for VM.
2025-07-25 20:47:39 (6228): Disabling LPT Port Support for VM.
2025-07-25 20:47:39 (6228): Disabling Audio Support for VM.
2025-07-25 20:47:39 (6228): Disabling Clipboard Support for VM.
2025-07-25 20:47:40 (6228): Disabling Drag and Drop Support for VM.
2025-07-25 20:47:40 (6228): Adding storage controller(s) to VM.
2025-07-25 20:47:40 (6228): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 20:47:43 (6228): Adding VirtualBox Guest Additions to VM.
2025-07-25 20:47:43 (6228): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 20:47:43 (6228): forwarding host port 63092 to guest port 80
2025-07-25 20:47:44 (6228): Enabling remote desktop for VM.
2025-07-25 20:47:44 (6228): Required extension pack not installed, remote desktop not enabled.
2025-07-25 20:47:44 (6228): Enabling shared directory for VM.
2025-07-25 20:47:44 (6228): Starting VM using VBoxManage interface. (boinc_65c64e31c84e878d, slot#2)
2025-07-25 20:47:50 (6228): Successfully started VM. (PID = '10504')
2025-07-25 20:47:50 (6228): Reporting VM Process ID to BOINC.
2025-07-25 20:47:50 (6228): Guest Log: BIOS: VirtualBox 7.1.6
2025-07-25 20:47:50 (6228): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 20:47:50 (6228): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 20:47:50 (6228): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 20:47:50 (6228): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 20:47:50 (6228): Detected: Web Application Enabled (http://localhost:63092)
2025-07-25 20:47:50 (6228): Preference change detected
2025-07-25 20:47:50 (6228): Setting CPU throttle for VM. (75%)
2025-07-25 20:47:50 (6228): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 20:47:52 (6228): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 20:47:52 (6228): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 20:47:55 (6228): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 20:47:55 (6228): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 20:47:55 (6228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 20:48:05 (6228): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 20:48:05 (6228): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 20:48:13 (6228): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 20:48:13 (6228): Guest Log: 00:00:00.000143 main     Log opened 2025-07-25T20:48:12.127185000Z
2025-07-25 20:48:13 (6228): Guest Log: 00:00:00.000241 main     OS Product: Linux
2025-07-25 20:48:13 (6228): Guest Log: 00:00:00.000269 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 20:48:13 (6228): Guest Log: 00:00:00.000290 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 20:48:13 (6228): Guest Log: 00:00:00.000312 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 20:48:13 (6228): Guest Log: 00:00:00.000312 main     Process ID: 1377
2025-07-25 20:48:13 (6228): Guest Log: 00:00:00.000313 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 20:48:13 (6228): Guest Log: 00:00:00.001097 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 20:48:13 (6228): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 20:48:13 (6228): Guest Log: [INFO] Mounting shared directory
2025-07-25 20:48:14 (6228): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 20:48:19 (6228): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 20:48:19 (6228): Guest Log: [INFO] Detected branch: prod
2025-07-25 20:48:19 (6228): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 20:48:19 (6228): Guest Log: Copying input files
2025-07-25 20:48:20 (6228): Guest Log: Copied input files into RunAtlas.
2025-07-25 20:48:20 (6228): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 20:48:20 (6228): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 20:48:20 (6228): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 20:48:20 (6228): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 20:48:23 (6228): Guest Log: 00:00:10.002717 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 890 938 000ns (GuestNow=1 753 469 303 238 391 000 ns GuestLast=1 753 476 492 129 329 000 ns fSetTimeLastLoop=true )
2025-07-25 20:48:28 (6228): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 20:48:28 (6228): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 20:48:28 (6228): Guest Log: 2.6.3.0 1653 0 30128 148750 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 20:48:29 (6228): Guest Log: copied the webapp to /var/www
2025-07-25 20:48:29 (6228): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-25 20:48:29 (6228): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-25 20:48:29 (6228): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 20:48:29 (6228): Guest Log:  *** Starting ATLAS job. (PandaID=6744945267 taskID=45743349) ***
2025-07-25 22:27:55 (6228): Status Report: Elapsed Time: '6000.000000'
2025-07-25 22:27:55 (6228): Status Report: CPU Time: '33471.343750'
2025-07-25 23:26:07 (6228): Guest Log:  *** Job finished ***
2025-07-25 23:26:07 (6228): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:25:51,340 | INFO     | end of generic workflow (traces error code: 0)
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:25:51,340 | INFO     | traces error code: 0
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:25:51,341 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,143 | INFO     | PID=5987 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,143 | INFO     | found 0 job(s) in 20 queues
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,144 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,144 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,144 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,144 | CRITICAL | thread 'MainThread' is not alive
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,144 | INFO     | [monitor] control thread has ended
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,268 [wrapper] ==== pilot stdout END ====
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,274 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,278 [wrapper] pilotpid: 5987
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,282 [wrapper] Pilot exit status: 0
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,349 [wrapper] pandaids: 6744945267
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,375 [wrapper] cleanup supervisor_pilot  6146 5988
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,380 [wrapper] Test setup, not cleaning
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,385 [wrapper] apfmon messages muted
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,389 [wrapper] ==== wrapper stdout END ====
2025-07-25 23:26:07 (6228): Guest Log: 2025-07-25 21:26:05,394 [wrapper] ==== wrapper stderr END ====
2025-07-25 23:26:07 (6228): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 23:26:07 (6228): Guest Log:     "exeErrorCode": 0,
2025-07-25 23:26:07 (6228): Guest Log:     "exeErrorDiag": "",
2025-07-25 23:26:07 (6228): Guest Log:     "pilotErrorCode": 0,
2025-07-25 23:26:07 (6228): Guest Log:     "pilotErrorDiag": "",
2025-07-25 23:26:07 (6228): Guest Log:  *** Listing of results directory ***
2025-07-25 23:26:07 (6228): Guest Log: total 206540
2025-07-25 23:26:07 (6228): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 25 01:09 pilot3.tar.gz
2025-07-25 23:26:07 (6228): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 25 01:12 queuedata.json
2025-07-25 23:26:07 (6228): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 25 01:13 runpilot2-wrapper.sh
2025-07-25 23:26:07 (6228): Guest Log: -rwxr-xr-x. 1 atlas atlas      9098 Jul 25 18:48 init_data.xml
2025-07-25 23:26:07 (6228): Guest Log: -rwxr-xr-x. 1 atlas atlas    542897 Jul 25 18:48 input.tar.gz
2025-07-25 23:26:07 (6228): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 25 18:48 start_atlas.sh
2025-07-25 23:26:07 (6228): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 25 18:48 EVNT.45743347._000770.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 23:26:07 (6228): Guest Log: -rw-r--r--. 1 atlas atlas      2561 Jul 25 18:48 pandaJob.out
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas    979993 Jul 25 18:49 agis_schedconf.cvmfs.json
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 25 18:49 agis_ddmendpoints.agis.ALL.json
2025-07-25 23:26:07 (6228): Guest Log: drwx------. 4 atlas atlas      4096 Jul 25 18:49 pilot3
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas 205597999 Jul 25 21:24 HITS.45743349._014032.pool.root.1
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas        95 Jul 25 21:25 pilot_heartbeat.json
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas      1028 Jul 25 21:25 memory_monitor_summary.json
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas    327990 Jul 25 21:25 log.45743349._014032.job.log.tgz.1
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas      7776 Jul 25 21:25 heartbeat.json
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas       814 Jul 25 21:26 pilotlog.txt
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas    718032 Jul 25 21:26 log.45743349._014032.job.log.1
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas       357 Jul 25 21:26 output.list
2025-07-25 23:26:07 (6228): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 25 21:26 runtime_log
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas   1064960 Jul 25 21:26 result.tar.gz
2025-07-25 23:26:07 (6228): Guest Log: -rw-r--r--. 1 atlas atlas      8598 Jul 25 21:26 runtime_log.err
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas       659 Jul 25 21:26 399MDmHBMz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRNOLDmQYNfGm.diag
2025-07-25 23:26:07 (6228): Guest Log: Looking for outputfile HITS.45743349._014032.pool.root.1
2025-07-25 23:26:07 (6228): Guest Log: HITS file was successfully produced
2025-07-25 23:26:07 (6228): Guest Log: -rw-------. 1 atlas atlas 205597999 Jul 25 21:24 /home/atlas/RunAtlas/HITS.45743349._014032.pool.root.1
2025-07-25 23:26:08 (6228): Guest Log: Successfully finished the ATLAS job!
2025-07-25 23:26:08 (6228): Guest Log: Copying the results back to the shared directory!
2025-07-25 23:26:09 (6228): Guest Log:  *** Contents of shared directory: ***
2025-07-25 23:26:09 (6228): Guest Log: total 343548
2025-07-25 23:26:09 (6228): Guest Log: -rwxrwxrwx. 1 root root 144552688 Jul 25 18:47 ATLAS.root_0
2025-07-25 23:26:09 (6228): Guest Log: -rwxrwxrwx. 1 root root 205597999 Jul 25 21:26 HITS.pool.root.1
2025-07-25 23:26:09 (6228): Guest Log: -rwxrwxrwx. 1 root root      9098 Jul 25 18:47 init_data.xml
2025-07-25 23:26:09 (6228): Guest Log: -rwxrwxrwx. 1 root root    542897 Jul 25 07:52 input.tar.gz
2025-07-25 23:26:09 (6228): Guest Log: -rwxrwxrwx. 1 root root   1064960 Jul 25 21:26 result.tar.gz
2025-07-25 23:26:09 (6228): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 07:53 start_atlas.sh
2025-07-25 23:26:09 (6228): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 23:26:09 (6228): VM Completion File Detected.
2025-07-25 23:26:09 (6228): Powering off VM.
2025-07-25 23:26:09 (6228): Successfully stopped VM.
2025-07-25 23:26:09 (6228): Deregistering VM. (boinc_65c64e31c84e878d, slot#2)
2025-07-25 23:26:09 (6228): Removing network bandwidth throttle group from VM.
2025-07-25 23:26:09 (6228): Removing VM from VirtualBox.
23:26:15 (6228): called boinc_finish(0)

</stderr_txt>
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