Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:37:27 (2593765): wrapper (7.7.26015): starting
03:37:27 (2593765): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 03:37:27] Arguments: --nthreads 12
[2025-07-25 03:37:27] Threads: 12
[2025-07-25 03:37:27] Checking for CVMFS
[2025-07-25 03:37:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 03:37:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 03:37:29] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 03:37:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 03:37:30] 2.13.0.0 1071838 15209 307084 148731 0 113 26820879 32935936 25984 16776704 0 48429846 99.557 55412563 9803 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 03:37:30] CVMFS is ok
[2025-07-25 03:37:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 03:37:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 03:37:30] Further information can be found at the LHC@home message board.
[2025-07-25 03:37:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 03:37:30] Checking for apptainer binary...
[2025-07-25 03:37:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 03:37:30] Running /usr/bin/apptainer --version
[2025-07-25 03:37:30] apptainer version 1.4.1-1.el9
[2025-07-25 03:37:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 03:37:31] c-8-39.aglt2.org
[2025-07-25 03:37:31] apptainer works
[2025-07-25 03:37:31] Set ATHENA_PROC_NUMBER=12
[2025-07-25 03:37:31] Set ATHENA_CORE_NUMBER=12
[2025-07-25 03:37:31] Starting ATLAS job with PandaID=6744944745
[2025-07-25 03:37:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 13:55:58]  *** The last 200 lines of the pilot log: ***
[2025-07-25 13:55:58] 2025-07-25 17:55:20,154 | INFO     | monitor loop #1729: job 0:6744944745 is in state 'finished'
[2025-07-25 13:55:58] 2025-07-25 17:55:20,154 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 13:55:58] 2025-07-25 17:55:22,659 | INFO     | monitor loop #1730: job 0:6744944745 is in state 'finished'
[2025-07-25 13:55:58] 2025-07-25 17:55:22,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,268 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 13:55:58] 2025-07-25 17:55:23,277 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2698.6400625000006
[2025-07-25 13:55:58] 2025-07-25 17:55:23,287 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744944745/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,288 | INFO     | extracted standard info from prmon json
[2025-07-25 13:55:58] 2025-07-25 17:55:23,288 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 13:55:58] 2025-07-25 17:55:23,288 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 13:55:58] 2025-07-25 17:55:23,289 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 13:55:58] 2025-07-25 17:55:23,289 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 13:55:58] 2025-07-25 17:55:23,300 | INFO     | fitting pss+swap vs Time
[2025-07-25 13:55:58] 2025-07-25 17:55:23,301 | INFO     | sum of square deviations: 67984476329.67174
[2025-07-25 13:55:58] 2025-07-25 17:55:23,311 | INFO     | sum of deviations: 40292271912.22389
[2025-07-25 13:55:58] 2025-07-25 17:55:23,312 | INFO     | mean x: 1753447674.7910447
[2025-07-25 13:55:58] 2025-07-25 17:55:23,312 | INFO     | mean y: 2301832.374792703
[2025-07-25 13:55:58] 2025-07-25 17:55:23,312 | INFO     | -- intersect: -1036911739.7639138
[2025-07-25 13:55:58] 2025-07-25 17:55:23,312 | INFO     | intersect: -1036911739.7639138
[2025-07-25 13:55:58] 2025-07-25 17:55:23,313 | INFO     | chi2: 2.917953699588576
[2025-07-25 13:55:58] 2025-07-25 17:55:23,314 | INFO     | sum of square deviations: 66307371759.01671
[2025-07-25 13:55:58] 2025-07-25 17:55:23,326 | INFO     | sum of deviations: 45421993007.3879
[2025-07-25 13:55:58] 2025-07-25 17:55:23,326 | INFO     | mean x: 1753447522.297659
[2025-07-25 13:55:58] 2025-07-25 17:55:23,326 | INFO     | mean y: 2302298.705685619
[2025-07-25 13:55:58] 2025-07-25 17:55:23,326 | INFO     | -- intersect: -1198847422.4155633
[2025-07-25 13:55:58] 2025-07-25 17:55:23,326 | INFO     | intersect: -1198847422.4155633
[2025-07-25 13:55:58] 2025-07-25 17:55:23,327 | INFO     | chi2: 2.9153249770122533
[2025-07-25 13:55:58] 2025-07-25 17:55:23,327 | INFO     | current chi2=2.9153249770122533 (change=0.09008787825158067 %)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,327 | INFO     | right removable region: 597
[2025-07-25 13:55:58] 2025-07-25 17:55:23,328 | INFO     | sum of square deviations: 66307080789.01673
[2025-07-25 13:55:58] 2025-07-25 17:55:23,339 | INFO     | sum of deviations: -80335181510.94646
[2025-07-25 13:55:58] 2025-07-25 17:55:23,340 | INFO     | mean x: 1753447827.297659
[2025-07-25 13:55:58] 2025-07-25 17:55:23,340 | INFO     | mean y: 2312776.7525083614
[2025-07-25 13:55:58] 2025-07-25 17:55:23,340 | INFO     | -- intersect: 2126724646.491541
[2025-07-25 13:55:58] 2025-07-25 17:55:23,340 | INFO     | intersect: 2126724646.491541
[2025-07-25 13:55:58] 2025-07-25 17:55:23,341 | INFO     | chi2: 0.8763935221512438
[2025-07-25 13:55:58] 2025-07-25 17:55:23,341 | INFO     | current chi2=0.8763935221512438 (change=69.9654753852053 %)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,342 | INFO     | sum of square deviations: 64657499723.30861
[2025-07-25 13:55:58] 2025-07-25 17:55:23,357 | INFO     | sum of deviations: -111361666774.24428
[2025-07-25 13:55:58] 2025-07-25 17:55:23,357 | INFO     | mean x: 1753447979.8043845
[2025-07-25 13:55:58] 2025-07-25 17:55:23,357 | INFO     | mean y: 2315638.2478920743
[2025-07-25 13:55:58] 2025-07-25 17:55:23,357 | INFO     | -- intersect: 3022334823.470967
[2025-07-25 13:55:58] 2025-07-25 17:55:23,357 | INFO     | intersect: 3022334823.470967
[2025-07-25 13:55:58] 2025-07-25 17:55:23,358 | INFO     | chi2: 0.7172261867682362
[2025-07-25 13:55:58] 2025-07-25 17:55:23,359 | INFO     | current chi2=0.7172261867682362 (change=18.161628464836966 %)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,359 | INFO     | left removable region: 20
[2025-07-25 13:55:58] 2025-07-25 17:55:23,360 | INFO     | sum of square deviations: 59563894537.47638
[2025-07-25 13:55:58] 2025-07-25 17:55:23,370 | INFO     | sum of deviations: -67859894688.27207
[2025-07-25 13:55:58] 2025-07-25 17:55:23,371 | INFO     | mean x: 1753448101.8024263
[2025-07-25 13:55:58] 2025-07-25 17:55:23,371 | INFO     | mean y: 2312737.480069324
[2025-07-25 13:55:58] 2025-07-25 17:55:23,371 | INFO     | -- intersect: 1999979351.6870687
[2025-07-25 13:55:58] 2025-07-25 17:55:23,371 | INFO     | intersect: 1999979351.6870687
[2025-07-25 13:55:58] 2025-07-25 17:55:23,372 | INFO     | chi2: 0.6095871264562367
[2025-07-25 13:55:58] 2025-07-25 17:55:23,372 | INFO     | -- intersect: 1999979351.6870687
[2025-07-25 13:55:58] 2025-07-25 17:55:23,372 | INFO     | current memory leak: -1.14 B/s (using 577 data points, chi2=0.61)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,373 | INFO     | could have reported an average CPU frequency of 2666 MHz (23 samples)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,374 | INFO     | ..............................
[2025-07-25 13:55:58] 2025-07-25 17:55:23,374 | INFO     | . Timing measurements:
[2025-07-25 13:55:58] 2025-07-25 17:55:23,374 | INFO     | . get job = 0 s
[2025-07-25 13:55:58] 2025-07-25 17:55:23,374 | INFO     | . initial setup = 7 s
[2025-07-25 13:55:58] 2025-07-25 17:55:23,374 | INFO     | . payload setup = 57 s
[2025-07-25 13:55:58] 2025-07-25 17:55:23,374 | INFO     | . stage-in = 0 s
[2025-07-25 13:55:58] 2025-07-25 17:55:23,374 | INFO     | . payload execution = 36820 s
[2025-07-25 13:55:58] 2025-07-25 17:55:23,374 | INFO     | . stage-out = 4 s
[2025-07-25 13:55:58] 2025-07-25 17:55:23,375 | INFO     | . log creation = 0 s
[2025-07-25 13:55:58] 2025-07-25 17:55:23,375 | INFO     | ..............................
[2025-07-25 13:55:58] 2025-07-25 17:55:23,503 | INFO     | 
[2025-07-25 13:55:58] 2025-07-25 17:55:23,504 | INFO     | job summary report
[2025-07-25 13:55:58] 2025-07-25 17:55:23,504 | INFO     | --------------------------------------------------
[2025-07-25 13:55:58] 2025-07-25 17:55:23,504 | INFO     | PanDA job id: 6744944745
[2025-07-25 13:55:58] 2025-07-25 17:55:23,504 | INFO     | task id: 45743349
[2025-07-25 13:55:58] 2025-07-25 17:55:23,504 | INFO     | errors: (none)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,504 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 13:55:58] 2025-07-25 17:55:23,504 | INFO     | pilot state: finished 
[2025-07-25 13:55:58] 2025-07-25 17:55:23,504 | INFO     | transexitcode: 0
[2025-07-25 13:55:58] 2025-07-25 17:55:23,505 | INFO     | exeerrorcode: 0
[2025-07-25 13:55:58] 2025-07-25 17:55:23,505 | INFO     | exeerrordiag: 
[2025-07-25 13:55:58] 2025-07-25 17:55:23,505 | INFO     | exitcode: 0
[2025-07-25 13:55:58] 2025-07-25 17:55:23,505 | INFO     | exitmsg: OK
[2025-07-25 13:55:58] 2025-07-25 17:55:23,505 | INFO     | cpuconsumptiontime: 67295 s
[2025-07-25 13:55:58] 2025-07-25 17:55:23,505 | INFO     | nevents: 400
[2025-07-25 13:55:58] 2025-07-25 17:55:23,505 | INFO     | neventsw: 0
[2025-07-25 13:55:58] 2025-07-25 17:55:23,505 | INFO     | pid: 2620246
[2025-07-25 13:55:58] 2025-07-25 17:55:23,506 | INFO     | pgrp: 2620246
[2025-07-25 13:55:58] 2025-07-25 17:55:23,506 | INFO     | corecount: 12
[2025-07-25 13:55:58] 2025-07-25 17:55:23,506 | INFO     | event service: False
[2025-07-25 13:55:58] 2025-07-25 17:55:23,506 | INFO     | sizes: {0: 2396588, 1: 2397273, 2: 2397472, 3: 2397500, 14: 2397500, 25: 2397528, 36: 2397684, 40: 2397974, 47: 2398002, 36882: 2437827, 36888: 2446825, 36890: 244
[2025-07-25 13:55:58] 2025-07-25 17:55:23,506 | INFO     | --------------------------------------------------
[2025-07-25 13:55:58] 2025-07-25 17:55:23,506 | INFO     | 
[2025-07-25 13:55:58] 2025-07-25 17:55:23,506 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 13:55:58] 2025-07-25 17:55:23,582 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,583 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,583 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,583 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,583 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,583 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,584 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,584 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,584 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,584 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,584 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,584 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,584 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,585 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,585 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,585 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,585 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,585 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,585 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,585 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 13:55:58] 2025-07-25 17:55:23,586 | INFO     | job 6744944745 has completed (purged errors)
[2025-07-25 13:55:58] 2025-07-25 17:55:23,586 | INFO     | overall cleanup function is called
[2025-07-25 13:55:58] 2025-07-25 17:55:24,599 | INFO     | --- collectZombieJob: --- 10, [2620246]
[2025-07-25 13:55:58] 2025-07-25 17:55:24,599 | INFO     | zombie collector waiting for pid 2620246
[2025-07-25 13:55:58] 2025-07-25 17:55:24,599 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 13:55:58] 2025-07-25 17:55:24,599 | INFO     | collected zombie processes
[2025-07-25 13:55:58] 2025-07-25 17:55:24,599 | INFO     | will attempt to kill all subprocesses of pid=2620246
[2025-07-25 13:55:58] 2025-07-25 17:55:25,735 | INFO     | process IDs to be killed: [2620246] (in reverse order)
[2025-07-25 13:55:58] 2025-07-25 17:55:25,995 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 13:55:58] 2025-07-25 17:55:25,995 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 13:55:58] 2025-07-25 17:55:26,023 | INFO     | did not find any defunct processes belonging to 2620246
[2025-07-25 13:55:58] 2025-07-25 17:55:26,055 | INFO     | did not find any defunct processes belonging to 2620246
[2025-07-25 13:55:58] 2025-07-25 17:55:26,055 | INFO     | ready for new job
[2025-07-25 13:55:58] 2025-07-25 17:55:26,055 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 13:55:58] 2025-07-25 17:55:26,062 | INFO     | ***************************************
[2025-07-25 13:55:58] 2025-07-25 17:55:26,063 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 13:55:58] 2025-07-25 17:55:26,063 | INFO     | ***************************************
[2025-07-25 13:55:58] 2025-07-25 17:55:26,063 | INFO     | 
[2025-07-25 13:55:58] 2025-07-25 17:55:26,078 | INFO     | architecture information:
[2025-07-25 13:55:58] 2025-07-25 17:55:26,083 | INFO     | executing command: cat /etc/os-release
[2025-07-25 13:55:58] 2025-07-25 17:55:26,151 | INFO     | cat /etc/os-release:
[2025-07-25 13:55:58] NAME="CentOS Linux"
[2025-07-25 13:55:58] VERSION="7 (Core)"
[2025-07-25 13:55:58] ID="centos"
[2025-07-25 13:55:58] ID_LIKE="rhel fedora"
[2025-07-25 13:55:58] VERSION_ID="7"
[2025-07-25 13:55:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 13:55:58] ANSI_COLOR="0;31"
[2025-07-25 13:55:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 13:55:58] HOME_URL="https://www.centos.org/"
[2025-07-25 13:55:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 13:55:58] 
[2025-07-25 13:55:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 13:55:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 13:55:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 13:55:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 13:55:58] 
[2025-07-25 13:55:58] 2025-07-25 17:55:26,151 | INFO     | ***************************************
[2025-07-25 13:55:58] 2025-07-25 17:55:26,655 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 13:55:58] 2025-07-25 17:55:26,722 | INFO     | sufficient remaining disk space (76622594048 B)
[2025-07-25 13:55:58] 2025-07-25 17:55:26,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 13:55:58] 2025-07-25 17:55:26,723 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 13:55:58] 2025-07-25 17:55:26,723 | INFO     | update_server=False
[2025-07-25 13:55:58] 2025-07-25 17:55:26,723 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 13:55:58] 2025-07-25 17:55:26,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 13:55:58] 2025-07-25 17:55:26,730 | INFO     | aborting loop
[2025-07-25 13:55:58] 2025-07-25 17:55:27,294 | INFO     | all data control threads have been joined
[2025-07-25 13:55:58] 2025-07-25 17:55:27,731 | INFO     | [job] retrieve thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:27,736 | INFO     | [job] job monitor thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:27,821 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:27,821 | INFO     | [data] copytool_in thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:27,837 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 13:55:58] 2025-07-25 17:55:27,915 | INFO     | [job] validate thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:27,929 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:28,094 | INFO     | all payload control threads have been joined
[2025-07-25 13:55:58] 2025-07-25 17:55:28,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 13:55:58] 2025-07-25 17:55:28,224 | INFO     | [payload] validate_post thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:28,228 | INFO     | [payload] failed_post thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:28,300 | INFO     | [data] control thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:28,388 | INFO     | all job control threads have been joined
[2025-07-25 13:55:58] 2025-07-25 17:55:28,445 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:28,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 13:55:58] 2025-07-25 17:55:28,772 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:29,100 | INFO     | [payload] control thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:29,395 | INFO     | [job] control thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:29,524 | INFO     | [job] queue monitor thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:30,118 | INFO     | [data] copytool_out thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:31,846 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 13:55:58] 2025-07-25 17:55:32,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140282025219904)>', '<ExcThread(monitor, started 140280929965824)>']
[2025-07-25 13:55:58] 2025-07-25 17:55:37,985 | INFO     | all workflow threads have been joined
[2025-07-25 13:55:58] 2025-07-25 17:55:37,985 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 13:55:58] 2025-07-25 17:55:37,985 | INFO     | traces error code: 0
[2025-07-25 13:55:58] 2025-07-25 17:55:37,986 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 13:55:58] 2025-07-25 17:55:56,907 | INFO     | PID=2599392 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 13:55:58] 2025-07-25 17:55:56,908 | INFO     | .. there are 45 such processes running
[2025-07-25 13:55:58] 2025-07-25 17:55:56,909 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 13:55:58] 2025-07-25 17:55:56,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 13:55:58] 2025-07-25 17:55:56,909 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 13:55:58] 2025-07-25 17:55:56,909 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 13:55:58] 2025-07-25 17:55:56,909 | INFO     | [monitor] control thread has ended
[2025-07-25 13:55:58] 2025-07-25 17:55:57,214 [wrapper] ==== pilot stdout END ====
[2025-07-25 13:55:58] 2025-07-25 17:55:57,254 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 13:55:58] 2025-07-25 17:55:57,275 [wrapper] pilotpid: 2599392
[2025-07-25 13:55:58] 2025-07-25 17:55:57,293 [wrapper] Pilot exit status: 0
[2025-07-25 13:55:58] 2025-07-25 17:55:57,466 [wrapper] pandaids: 6744944745
[2025-07-25 13:55:58] 2025-07-25 17:55:57,735 [wrapper] cleanup supervisor_pilot  921108 2599393
[2025-07-25 13:55:58] 2025-07-25 17:55:57,739 [wrapper] Test setup, not cleaning
[2025-07-25 13:55:58] 2025-07-25 17:55:57,755 [wrapper] apfmon messages muted
[2025-07-25 13:55:58] 2025-07-25 17:55:57,788 [wrapper] ==== wrapper stdout END ====
[2025-07-25 13:55:58] 2025-07-25 17:55:57,791 [wrapper] ==== wrapper stderr END ====
[2025-07-25 13:55:58]  *** Error codes and diagnostics ***
[2025-07-25 13:55:58]     "exeErrorCode": 0,
[2025-07-25 13:55:58]     "exeErrorDiag": "",
[2025-07-25 13:55:58]     "pilotErrorCode": 0,
[2025-07-25 13:55:58]     "pilotErrorDiag": "",
[2025-07-25 13:55:58]  *** Listing of results directory ***
[2025-07-25 13:55:58] total 360560
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 20:40 pilot3.tar.gz
[2025-07-25 13:55:58] -rwx------. 1 boincer umatlas     36292 Jul 24 20:57 runpilot2-wrapper.sh
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 20:57 queuedata.json
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas       100 Jul 25 03:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 13:55:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 03:37 run_atlas
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas       105 Jul 25 03:37 job.xml
[2025-07-25 13:55:58] -rw-r--r--. 2 boincer umatlas 146059121 Jul 25 03:37 EVNT.45743347._000753.pool.root.1
[2025-07-25 13:55:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 03:37 start_atlas.sh
[2025-07-25 13:55:58] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 03:37 shared
[2025-07-25 13:55:58] -rw-r--r--. 2 boincer umatlas    542880 Jul 25 03:37 input.tar.gz
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas         0 Jul 25 03:37 boinc_lockfile
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas      2558 Jul 25 03:37 pandaJob.out
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas    979709 Jul 25 03:38 agis_schedconf.cvmfs.json
[2025-07-25 13:55:58] drwx------. 4 boincer umatlas      4096 Jul 25 03:38 pilot3
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas 213158002 Jul 25 13:54 HITS.45743349._013768.pool.root.1
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas       531 Jul 25 13:54 boinc_task_state.xml
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas      6614 Jul 25 13:54 init_data.xml
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas      1040 Jul 25 13:54 memory_monitor_summary.json
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas   1593052 Jul 25 13:54 agis_ddmendpoints.agis.ALL.json
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas    597970 Jul 25 13:55 log.45743349._013768.job.log.tgz.1
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas      7817 Jul 25 13:55 heartbeat.json
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas        95 Jul 25 13:55 pilot_heartbeat.json
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas        28 Jul 25 13:55 wrapper_checkpoint.txt
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 13:55 boinc_mmap_file
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas       823 Jul 25 13:55 pilotlog.txt
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas   2463154 Jul 25 13:55 log.45743349._013768.job.log.1
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas       357 Jul 25 13:55 output.list
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas       620 Jul 25 13:55 runtime_log
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas   3082240 Jul 25 13:55 result.tar.gz
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas      8653 Jul 25 13:55 runtime_log.err
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas       658 Jul 25 13:55 oObKDmpvLz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVLOLDm2W9BHn.diag
[2025-07-25 13:55:58] -rw-r--r--. 1 boincer umatlas     21298 Jul 25 13:55 stderr.txt
[2025-07-25 13:55:58] HITS file was successfully produced:
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas 213158002 Jul 25 13:54 shared/HITS.pool.root.1
[2025-07-25 13:55:58]  *** Contents of shared directory: ***
[2025-07-25 13:55:58] total 354364
[2025-07-25 13:55:58] -rw-r--r--. 2 boincer umatlas 146059121 Jul 25 03:37 ATLAS.root_0
[2025-07-25 13:55:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 03:37 start_atlas.sh
[2025-07-25 13:55:58] -rw-r--r--. 2 boincer umatlas    542880 Jul 25 03:37 input.tar.gz
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas 213158002 Jul 25 13:54 HITS.pool.root.1
[2025-07-25 13:55:58] -rw-------. 1 boincer umatlas   3082240 Jul 25 13:55 result.tar.gz
13:55:59 (2593765): run_atlas exited; CPU time 69339.294856
13:55:59 (2593765): called boinc_finish(0)

</stderr_txt>
]]>

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