Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:16:46 (55879): wrapper (7.7.26015): starting
03:16:46 (55879): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 03:16:46] Arguments: --nthreads 8
[2025-07-25 03:16:46] Threads: 8
[2025-07-25 03:16:46] Checking for CVMFS
[2025-07-25 03:16:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 03:16:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 03:16:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 03:16:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 03:16:46] 2.13.1.0 285388 5183 92564 148730 0 188 10289447 40960000 12923 16776704 0 61945491 99.998 219066 28197 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 03:16:46] CVMFS is ok
[2025-07-25 03:16:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 03:16:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 03:16:46] Further information can be found at the LHC@home message board.
[2025-07-25 03:16:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 03:16:46] Checking for apptainer binary...
[2025-07-25 03:16:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 03:16:46] Running /usr/bin/apptainer --version
[2025-07-25 03:16:46] apptainer version 1.4.1-1.el9
[2025-07-25 03:16:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 03:16:46] c-208-36.aglt2.org
[2025-07-25 03:16:46] apptainer works
[2025-07-25 03:16:46] Set ATHENA_PROC_NUMBER=8
[2025-07-25 03:16:46] Set ATHENA_CORE_NUMBER=8
[2025-07-25 03:16:46] Starting ATLAS job with PandaID=6744944508
[2025-07-25 03:16:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 04:12:39]  *** The last 200 lines of the pilot log: ***
[2025-07-25 04:12:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-25 04:12:39]  is_altstaged=None
[2025-07-25 04:12:39]  is_tar=False
[2025-07-25 04:12:39]  lfn=log.45743349._013594.job.log.tgz.1
[2025-07-25 04:12:39]  mtime=0
[2025-07-25 04:12:39]  protocol_id=None
[2025-07-25 04:12:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-25 04:12:39]  replicas=None
[2025-07-25 04:12:39]  scope=mc23_13p6TeV
[2025-07-25 04:12:39]  status=None
[2025-07-25 04:12:39]  status_code=0
[2025-07-25 04:12:39]  storage_token=
[2025-07-25 04:12:39]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6744944508/log.45743349._013594.job.log.tgz.1
[2025-07-25 04:12:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/a6/log.45743349._013594.job.log.tgz.1
[2025-07-25 04:12:39]  workdir=None
[2025-07-25 04:12:39] ]
[2025-07-25 04:12:39] 2025-07-25 08:12:03,553 | INFO     | transferring file log.45743349._013594.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6744944508/log.45743349._013594.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 04:12:39] 2025-07-25 08:12:03,553 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6744944508/log.45743349._013594.job.log.tgz.1 /tmp/boinchome/slots/8/log.45743349._013594.job
[2025-07-25 04:12:39] 2025-07-25 08:12:03,571 | INFO     | adding to output.list: log.45743349._013594.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/a6/log.45743349._013594.job.log.tg
[2025-07-25 04:12:39] 2025-07-25 08:12:03,571 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 04:12:39] 2025-07-25 08:12:03,572 | INFO     | summary of transferred files:
[2025-07-25 04:12:39] 2025-07-25 08:12:03,572 | INFO     |  -- lfn=log.45743349._013594.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 04:12:39] 2025-07-25 08:12:03,572 | INFO     | stage-out finished correctly
[2025-07-25 04:12:39] 2025-07-25 08:12:03,628 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 04:12:39] 2025-07-25 08:12:03,680 | INFO     | job 6744944508 has state=finished
[2025-07-25 04:12:39] 2025-07-25 08:12:03,680 | INFO     | preparing for final server update for job 6744944508 in state='finished'
[2025-07-25 04:12:39] 2025-07-25 08:12:03,680 | INFO     | this job has now completed (state=finished)
[2025-07-25 04:12:39] 2025-07-25 08:12:03,681 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 04:12:39] 2025-07-25 08:12:03,681 | INFO     | log transfer has been attempted: DONE
[2025-07-25 04:12:39] 2025-07-25 08:12:03,681 | INFO     | job 6744944508 has finished - writing final server update
[2025-07-25 04:12:39] 2025-07-25 08:12:03,681 | INFO     | total number of processed events: 400 (read)
[2025-07-25 04:12:39] 2025-07-25 08:12:03,681 | INFO     | executing command: lscpu
[2025-07-25 04:12:39] 2025-07-25 08:12:03,736 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 04:12:39] 2025-07-25 08:12:04,660 | INFO     | PID=59487 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 04:12:39] 2025-07-25 08:12:04,661 | INFO     | .. there are 16 such processes running
[2025-07-25 04:12:39] 2025-07-25 08:12:05,832 | INFO     | monitor loop #246: job 0:6744944508 is in state 'finished'
[2025-07-25 04:12:39] 2025-07-25 08:12:05,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 04:12:39] 2025-07-25 08:12:07,183 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 04:12:39] 2025-07-25 08:12:07,189 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3782.896289062499
[2025-07-25 04:12:39] 2025-07-25 08:12:07,202 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6744944508/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 04:12:39] 2025-07-25 08:12:07,203 | INFO     | extracted standard info from prmon json
[2025-07-25 04:12:39] 2025-07-25 08:12:07,203 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 04:12:39] 2025-07-25 08:12:07,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 04:12:39] 2025-07-25 08:12:07,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 04:12:39] 2025-07-25 08:12:07,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 04:12:39] 2025-07-25 08:12:07,204 | INFO     | fitting pss+swap vs Time
[2025-07-25 04:12:39] 2025-07-25 08:12:07,204 | INFO     | sum of square deviations: 32179208.0
[2025-07-25 04:12:39] 2025-07-25 08:12:07,204 | INFO     | sum of deviations: -1177818682.9999998
[2025-07-25 04:12:39] 2025-07-25 08:12:07,204 | INFO     | mean x: 1753429548.0
[2025-07-25 04:12:39] 2025-07-25 08:12:07,204 | INFO     | mean y: 2586149.5319148935
[2025-07-25 04:12:39] 2025-07-25 08:12:07,204 | INFO     | -- intersect: 64181359006.79567
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | intersect: 64181359006.79567
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | chi2: 0.009483749997951053
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | -- intersect: 64181359006.79567
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | current memory leak: -36.60 B/s (using 47 data points, chi2=0.01)
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | could have reported an average CPU frequency of 3781 MHz (5 samples)
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | ..............................
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | . Timing measurements:
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | . get job = 0 s
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | . initial setup = 2 s
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | . payload setup = 5 s
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | . stage-in = 0 s
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | . payload execution = 3283 s
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | . stage-out = 0 s
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | . log creation = 0 s
[2025-07-25 04:12:39] 2025-07-25 08:12:07,205 | INFO     | ..............................
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | 
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | job summary report
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | --------------------------------------------------
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | PanDA job id: 6744944508
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | task id: 45743349
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | errors: (none)
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | pilot state: finished 
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | transexitcode: 0
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | exeerrorcode: 0
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | exeerrordiag: 
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | exitcode: 0
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | exitmsg: OK
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | cpuconsumptiontime: 24220 s
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | nevents: 400
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | neventsw: 0
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | pid: 67907
[2025-07-25 04:12:39] 2025-07-25 08:12:07,529 | INFO     | pgrp: 67907
[2025-07-25 04:12:39] 2025-07-25 08:12:07,530 | INFO     | corecount: 8
[2025-07-25 04:12:39] 2025-07-25 08:12:07,530 | INFO     | event service: False
[2025-07-25 04:12:39] 2025-07-25 08:12:07,530 | INFO     | sizes: {0: 2397473, 5: 2397735, 11: 2397791, 3291: 2423340, 3293: 2432394, 3296: 2432564}
[2025-07-25 04:12:39] 2025-07-25 08:12:07,530 | INFO     | --------------------------------------------------
[2025-07-25 04:12:39] 2025-07-25 08:12:07,530 | INFO     | 
[2025-07-25 04:12:39] 2025-07-25 08:12:07,530 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-07-25 04:12:39] 2025-07-25 08:12:07,548 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,548 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,548 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,548 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | job 6744944508 has completed (purged errors)
[2025-07-25 04:12:39] 2025-07-25 08:12:07,549 | INFO     | overall cleanup function is called
[2025-07-25 04:12:39] 2025-07-25 08:12:08,557 | INFO     | --- collectZombieJob: --- 10, [67907]
[2025-07-25 04:12:39] 2025-07-25 08:12:08,557 | INFO     | zombie collector waiting for pid 67907
[2025-07-25 04:12:39] 2025-07-25 08:12:08,557 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 04:12:39] 2025-07-25 08:12:08,557 | INFO     | collected zombie processes
[2025-07-25 04:12:39] 2025-07-25 08:12:08,557 | INFO     | will attempt to kill all subprocesses of pid=67907
[2025-07-25 04:12:39] 2025-07-25 08:12:08,894 | INFO     | process IDs to be killed: [67907] (in reverse order)
[2025-07-25 04:12:39] 2025-07-25 08:12:09,009 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 04:12:39] 2025-07-25 08:12:09,009 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 04:12:39] 2025-07-25 08:12:09,026 | INFO     | did not find any defunct processes belonging to 67907
[2025-07-25 04:12:39] 2025-07-25 08:12:09,040 | INFO     | did not find any defunct processes belonging to 67907
[2025-07-25 04:12:39] 2025-07-25 08:12:09,041 | INFO     | ready for new job
[2025-07-25 04:12:39] 2025-07-25 08:12:09,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 04:12:39] 2025-07-25 08:12:09,042 | INFO     | ***************************************
[2025-07-25 04:12:39] 2025-07-25 08:12:09,042 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 04:12:39] 2025-07-25 08:12:09,042 | INFO     | ***************************************
[2025-07-25 04:12:39] 2025-07-25 08:12:09,042 | INFO     | 
[2025-07-25 04:12:39] 2025-07-25 08:12:09,047 | INFO     | architecture information:
[2025-07-25 04:12:39] 2025-07-25 08:12:09,047 | INFO     | executing command: cat /etc/os-release
[2025-07-25 04:12:39] 2025-07-25 08:12:09,061 | INFO     | cat /etc/os-release:
[2025-07-25 04:12:39] NAME="CentOS Linux"
[2025-07-25 04:12:39] VERSION="7 (Core)"
[2025-07-25 04:12:39] ID="centos"
[2025-07-25 04:12:39] ID_LIKE="rhel fedora"
[2025-07-25 04:12:39] VERSION_ID="7"
[2025-07-25 04:12:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 04:12:39] ANSI_COLOR="0;31"
[2025-07-25 04:12:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 04:12:39] HOME_URL="https://www.centos.org/"
[2025-07-25 04:12:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 04:12:39] 
[2025-07-25 04:12:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 04:12:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 04:12:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 04:12:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 04:12:39] 
[2025-07-25 04:12:39] 2025-07-25 08:12:09,062 | INFO     | ***************************************
[2025-07-25 04:12:39] 2025-07-25 08:12:09,564 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-07-25 04:12:39] 2025-07-25 08:12:09,580 | INFO     | sufficient remaining disk space (166398525440 B)
[2025-07-25 04:12:39] 2025-07-25 08:12:09,580 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 04:12:39] 2025-07-25 08:12:09,580 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 04:12:39] 2025-07-25 08:12:09,580 | INFO     | update_server=False
[2025-07-25 04:12:39] 2025-07-25 08:12:09,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 04:12:39] 2025-07-25 08:12:09,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 04:12:39] 2025-07-25 08:12:09,581 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 04:12:39] 2025-07-25 08:12:09,581 | INFO     | aborting loop
[2025-07-25 04:12:39] 2025-07-25 08:12:09,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 04:12:39] 2025-07-25 08:12:10,047 | INFO     | all data control threads have been joined
[2025-07-25 04:12:39] 2025-07-25 08:12:10,149 | INFO     | all payload control threads have been joined
[2025-07-25 04:12:39] 2025-07-25 08:12:10,585 | INFO     | [job] retrieve thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:10,586 | INFO     | [job] job monitor thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:10,657 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:10,823 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:10,993 | INFO     | all job control threads have been joined
[2025-07-25 04:12:39] 2025-07-25 08:12:11,052 | INFO     | [data] control thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:11,154 | INFO     | [payload] control thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:11,205 | INFO     | [payload] validate_post thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:11,585 | INFO     | [data] copytool_out thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:11,619 | INFO     | [job] validate thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:11,652 | INFO     | [data] copytool_in thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:11,677 | INFO     | [payload] failed_post thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:11,761 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:11,840 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:11,996 | INFO     | [job] control thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:12,270 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 04:12:39] 2025-07-25 08:12:13,271 | INFO     | [job] queue monitor thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:13,691 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 04:12:39] 2025-07-25 08:12:14,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139775584446272)>', '<ExcThread(monitor, started 139774702626560)>']
[2025-07-25 04:12:39] 2025-07-25 08:12:19,578 | INFO     | all workflow threads have been joined
[2025-07-25 04:12:39] 2025-07-25 08:12:19,578 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 04:12:39] 2025-07-25 08:12:19,578 | INFO     | traces error code: 0
[2025-07-25 04:12:39] 2025-07-25 08:12:19,578 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 04:12:39] 2025-07-25 08:12:39,156 | INFO     | PID=59487 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-25 04:12:39] 2025-07-25 08:12:39,157 | INFO     | .. there are 16 such processes running
[2025-07-25 04:12:39] 2025-07-25 08:12:39,157 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 04:12:39] 2025-07-25 08:12:39,157 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 04:12:39] 2025-07-25 08:12:39,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 04:12:39] 2025-07-25 08:12:39,157 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 04:12:39] 2025-07-25 08:12:39,158 | INFO     | [monitor] control thread has ended
[2025-07-25 04:12:39] 2025-07-25 08:12:39,248 [wrapper] ==== pilot stdout END ====
[2025-07-25 04:12:39] 2025-07-25 08:12:39,251 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 04:12:39] 2025-07-25 08:12:39,253 [wrapper] pilotpid: 59487
[2025-07-25 04:12:39] 2025-07-25 08:12:39,256 [wrapper] Pilot exit status: 0
[2025-07-25 04:12:39] 2025-07-25 08:12:39,267 [wrapper] pandaids: 6744944508
[2025-07-25 04:12:39] 2025-07-25 08:12:39,348 [wrapper] cleanup supervisor_pilot  367108 59488
[2025-07-25 04:12:39] 2025-07-25 08:12:39,351 [wrapper] Test setup, not cleaning
[2025-07-25 04:12:39] 2025-07-25 08:12:39,355 [wrapper] apfmon messages muted
[2025-07-25 04:12:39] 2025-07-25 08:12:39,358 [wrapper] ==== wrapper stdout END ====
[2025-07-25 04:12:39] 2025-07-25 08:12:39,361 [wrapper] ==== wrapper stderr END ====
[2025-07-25 04:12:39]  *** Error codes and diagnostics ***
[2025-07-25 04:12:39]     "exeErrorCode": 0,
[2025-07-25 04:12:39]     "exeErrorDiag": "",
[2025-07-25 04:12:39]     "pilotErrorCode": 0,
[2025-07-25 04:12:39]     "pilotErrorDiag": "",
[2025-07-25 04:12:39]  *** Listing of results directory ***
[2025-07-25 04:12:39] total 357732
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 20:39 queuedata.json
[2025-07-25 04:12:39] -rwx------. 1 boincer umatlas     36292 Jul 24 20:40 runpilot2-wrapper.sh
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 20:40 pilot3.tar.gz
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas       100 Jul 25 03:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 04:12:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 03:16 run_atlas
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas       105 Jul 25 03:16 job.xml
[2025-07-25 04:12:39] -rw-r--r--. 2 boincer umatlas 147950817 Jul 25 03:16 EVNT.45743347._000741.pool.root.1
[2025-07-25 04:12:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 03:16 start_atlas.sh
[2025-07-25 04:12:39] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 03:16 shared
[2025-07-25 04:12:39] -rw-r--r--. 2 boincer umatlas    542882 Jul 25 03:16 input.tar.gz
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas         0 Jul 25 03:16 boinc_lockfile
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 03:16 pandaJob.out
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas    979701 Jul 25 03:16 agis_schedconf.cvmfs.json
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas   1593052 Jul 25 03:16 agis_ddmendpoints.agis.ALL.json
[2025-07-25 04:12:39] drwx------. 4 boincer umatlas      4096 Jul 25 03:16 pilot3
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas      7173 Jul 25 04:02 init_data.xml
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas       529 Jul 25 04:11 boinc_task_state.xml
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas 213227315 Jul 25 04:11 HITS.45743349._013594.pool.root.1
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas      1029 Jul 25 04:11 memory_monitor_summary.json
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas    290547 Jul 25 04:12 log.45743349._013594.job.log.tgz.1
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas      7769 Jul 25 04:12 heartbeat.json
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 04:12 boinc_mmap_file
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas        27 Jul 25 04:12 wrapper_checkpoint.txt
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas       821 Jul 25 04:12 pilotlog.txt
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas        95 Jul 25 04:12 pilot_heartbeat.json
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas    340813 Jul 25 04:12 log.45743349._013594.job.log.1
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas       357 Jul 25 04:12 output.list
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas       620 Jul 25 04:12 runtime_log
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas    655360 Jul 25 04:12 result.tar.gz
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas      8660 Jul 25 04:12 runtime_log.err
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas       651 Jul 25 04:12 b32LDmveLz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCKOLDmVHs9Kn.diag
[2025-07-25 04:12:39] -rw-r--r--. 1 boincer umatlas     21483 Jul 25 04:12 stderr.txt
[2025-07-25 04:12:39] HITS file was successfully produced:
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas 213227315 Jul 25 04:11 shared/HITS.pool.root.1
[2025-07-25 04:12:39]  *** Contents of shared directory: ***
[2025-07-25 04:12:39] total 353908
[2025-07-25 04:12:39] -rw-r--r--. 2 boincer umatlas 147950817 Jul 25 03:16 ATLAS.root_0
[2025-07-25 04:12:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 03:16 start_atlas.sh
[2025-07-25 04:12:39] -rw-r--r--. 2 boincer umatlas    542882 Jul 25 03:16 input.tar.gz
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas 213227315 Jul 25 04:11 HITS.pool.root.1
[2025-07-25 04:12:39] -rw-------. 1 boincer umatlas    655360 Jul 25 04:12 result.tar.gz
04:12:40 (55879): run_atlas exited; CPU time 24304.357474
04:12:40 (55879): called boinc_finish(0)

</stderr_txt>
]]>

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