Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:42:18 (509456): wrapper (7.7.26015): starting
04:42:18 (509456): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 04:42:18] Arguments: --nthreads 12
[2025-07-26 04:42:18] Threads: 12
[2025-07-26 04:42:18] Checking for CVMFS
[2025-07-26 04:42:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 04:42:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 04:42:19] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 04:42:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 04:42:19] 2.13.1.0 4489 31076 102064 148761 0 61 41313953 46080001 922 130560 0 20689041 99.993 958924 22531 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-26 04:42:19] CVMFS is ok
[2025-07-26 04:42:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 04:42:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 04:42:19] Further information can be found at the LHC@home message board.
[2025-07-26 04:42:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 04:42:19] Checking for apptainer binary...
[2025-07-26 04:42:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 04:42:19] Running /usr/bin/apptainer --version
[2025-07-26 04:42:19] apptainer version 1.4.1-1.el9
[2025-07-26 04:42:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 04:42:19] minis01.farm.particle.cz
[2025-07-26 04:42:19] apptainer works
[2025-07-26 04:42:19] Set ATHENA_PROC_NUMBER=12
[2025-07-26 04:42:19] Set ATHENA_CORE_NUMBER=12
[2025-07-26 04:42:19] Starting ATLAS job with PandaID=6744944355
[2025-07-26 04:42:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 05:39:53]  *** The last 200 lines of the pilot log: ***
[2025-07-26 05:39:53]  lfn=log.45743349._013441.job.log.tgz.1
[2025-07-26 05:39:53]  mtime=0
[2025-07-26 05:39:53]  protocol_id=None
[2025-07-26 05:39:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 05:39:53]  replicas=None
[2025-07-26 05:39:53]  scope=mc23_13p6TeV
[2025-07-26 05:39:53]  status=None
[2025-07-26 05:39:53]  status_code=0
[2025-07-26 05:39:53]  storage_token=
[2025-07-26 05:39:53]  surl=/scratch/.boinc/slots/1/PanDA_Pilot-6744944355/log.45743349._013441.job.log.tgz.1
[2025-07-26 05:39:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/7a/log.45743349._013441.job.log.tgz.1
[2025-07-26 05:39:53]  workdir=None
[2025-07-26 05:39:53] ]
[2025-07-26 05:39:53] 2025-07-26 03:39:18,048 | INFO     | transferring file log.45743349._013441.job.log.tgz.1 from /scratch/.boinc/slots/1/PanDA_Pilot-6744944355/log.45743349._013441.job.log.tgz.1 to /scratch/.boinc/slot
[2025-07-26 05:39:53] 2025-07-26 03:39:18,049 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/1/PanDA_Pilot-6744944355/log.45743349._013441.job.log.tgz.1 /scratch/.boinc/slots/1/log.45743349._013441.j
[2025-07-26 05:39:53] 2025-07-26 03:39:18,065 | INFO     | adding to output.list: log.45743349._013441.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/7a/log.45743349._013441.job.log.tg
[2025-07-26 05:39:53] 2025-07-26 03:39:18,065 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 05:39:53] 2025-07-26 03:39:18,066 | INFO     | summary of transferred files:
[2025-07-26 05:39:53] 2025-07-26 03:39:18,066 | INFO     |  -- lfn=log.45743349._013441.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 05:39:53] 2025-07-26 03:39:18,066 | INFO     | stage-out finished correctly
[2025-07-26 05:39:53] 2025-07-26 03:39:18,580 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 05:39:53] 2025-07-26 03:39:18,655 | INFO     | job 6744944355 has state=finished
[2025-07-26 05:39:53] 2025-07-26 03:39:18,655 | INFO     | preparing for final server update for job 6744944355 in state='finished'
[2025-07-26 05:39:53] 2025-07-26 03:39:18,655 | INFO     | this job has now completed (state=finished)
[2025-07-26 05:39:53] 2025-07-26 03:39:18,656 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 05:39:53] 2025-07-26 03:39:18,656 | INFO     | log transfer has been attempted: DONE
[2025-07-26 05:39:53] 2025-07-26 03:39:18,656 | INFO     | job 6744944355 has finished - writing final server update
[2025-07-26 05:39:53] 2025-07-26 03:39:18,656 | INFO     | total number of processed events: 400 (read)
[2025-07-26 05:39:53] 2025-07-26 03:39:18,657 | INFO     | executing command: lscpu
[2025-07-26 05:39:53] 2025-07-26 03:39:18,688 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 05:39:53] 2025-07-26 03:39:21,871 | WARNING  | process 520009 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 05:39:53] 2025-07-26 03:39:21,872 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6744944355/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 05:39:53] 2025-07-26 03:39:21,998 | INFO     | number of running child processes to parent process 520009: 1
[2025-07-26 05:39:53] 2025-07-26 03:39:21,998 | INFO     | maximum number of monitored processes: 6
[2025-07-26 05:39:53] 2025-07-26 03:39:22,161 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 05:39:53] 2025-07-26 03:39:22,166 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2730.91746875
[2025-07-26 05:39:53] 2025-07-26 03:39:22,170 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6744944355/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 05:39:53] 2025-07-26 03:39:22,171 | INFO     | extracted standard info from prmon json
[2025-07-26 05:39:53] 2025-07-26 03:39:22,171 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 05:39:53] 2025-07-26 03:39:22,171 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 05:39:53] 2025-07-26 03:39:22,171 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 05:39:53] 2025-07-26 03:39:22,171 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 05:39:53] 2025-07-26 03:39:22,172 | INFO     | fitting pss+swap vs Time
[2025-07-26 05:39:53] 2025-07-26 03:39:22,172 | INFO     | sum of square deviations: 36465800.0
[2025-07-26 05:39:53] 2025-07-26 03:39:22,172 | INFO     | sum of deviations: -5929118748.0
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | mean x: 1753499541.0
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | mean y: 2904379.1428571427
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | -- intersect: 285111334830.48346
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | intersect: 285111334830.48346
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | chi2: 0.056056621879333
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | -- intersect: 285111334830.48346
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | current memory leak: -162.59 B/s (using 49 data points, chi2=0.06)
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | could have reported an average CPU frequency of 2722 MHz (5 samples)
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | ..............................
[2025-07-26 05:39:53] 2025-07-26 03:39:22,173 | INFO     | . Timing measurements:
[2025-07-26 05:39:53] 2025-07-26 03:39:22,174 | INFO     | . get job = 0 s
[2025-07-26 05:39:53] 2025-07-26 03:39:22,174 | INFO     | . initial setup = 1 s
[2025-07-26 05:39:53] 2025-07-26 03:39:22,174 | INFO     | . payload setup = 5 s
[2025-07-26 05:39:53] 2025-07-26 03:39:22,174 | INFO     | . stage-in = 0 s
[2025-07-26 05:39:53] 2025-07-26 03:39:22,174 | INFO     | . payload execution = 3384 s
[2025-07-26 05:39:53] 2025-07-26 03:39:22,174 | INFO     | . stage-out = 0 s
[2025-07-26 05:39:53] 2025-07-26 03:39:22,174 | INFO     | . log creation = 0 s
[2025-07-26 05:39:53] 2025-07-26 03:39:22,174 | INFO     | ..............................
[2025-07-26 05:39:53] 2025-07-26 03:39:22,245 | INFO     | 
[2025-07-26 05:39:53] 2025-07-26 03:39:22,246 | INFO     | job summary report
[2025-07-26 05:39:53] 2025-07-26 03:39:22,246 | INFO     | --------------------------------------------------
[2025-07-26 05:39:53] 2025-07-26 03:39:22,246 | INFO     | PanDA job id: 6744944355
[2025-07-26 05:39:53] 2025-07-26 03:39:22,246 | INFO     | task id: 45743349
[2025-07-26 05:39:53] 2025-07-26 03:39:22,246 | INFO     | errors: (none)
[2025-07-26 05:39:53] 2025-07-26 03:39:22,246 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 05:39:53] 2025-07-26 03:39:22,246 | INFO     | pilot state: finished 
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | transexitcode: 0
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | exeerrorcode: 0
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | exeerrordiag: 
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | exitcode: 0
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | exitmsg: OK
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | cpuconsumptiontime: 36541 s
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | nevents: 400
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | neventsw: 0
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | pid: 520009
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | pgrp: 520009
[2025-07-26 05:39:53] 2025-07-26 03:39:22,247 | INFO     | corecount: 12
[2025-07-26 05:39:53] 2025-07-26 03:39:22,248 | INFO     | event service: False
[2025-07-26 05:39:53] 2025-07-26 03:39:22,248 | INFO     | sizes: {0: 2397302, 1: 2397501, 4: 2397763, 11: 2397791, 3394: 2423446, 3396: 2432630, 3400: 2432800}
[2025-07-26 05:39:53] 2025-07-26 03:39:22,248 | INFO     | --------------------------------------------------
[2025-07-26 05:39:53] 2025-07-26 03:39:22,248 | INFO     | 
[2025-07-26 05:39:53] 2025-07-26 03:39:22,248 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-07-26 05:39:53] 2025-07-26 03:39:22,266 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,267 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,267 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,267 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,267 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,267 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,267 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,267 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,267 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,267 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,268 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,268 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,268 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,268 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,268 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,268 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,268 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,268 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 05:39:53] 2025-07-26 03:39:22,268 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,269 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 05:39:53] 2025-07-26 03:39:22,269 | INFO     | job 6744944355 has completed (purged errors)
[2025-07-26 05:39:53] 2025-07-26 03:39:22,269 | INFO     | overall cleanup function is called
[2025-07-26 05:39:53] 2025-07-26 03:39:23,278 | INFO     | --- collectZombieJob: --- 10, [520009]
[2025-07-26 05:39:53] 2025-07-26 03:39:23,278 | INFO     | zombie collector waiting for pid 520009
[2025-07-26 05:39:53] 2025-07-26 03:39:23,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 05:39:53] 2025-07-26 03:39:23,278 | INFO     | collected zombie processes
[2025-07-26 05:39:53] 2025-07-26 03:39:23,279 | INFO     | will attempt to kill all subprocesses of pid=520009
[2025-07-26 05:39:53] 2025-07-26 03:39:23,416 | INFO     | process IDs to be killed: [520009] (in reverse order)
[2025-07-26 05:39:53] 2025-07-26 03:39:23,461 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 05:39:53] 2025-07-26 03:39:23,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 05:39:53] 2025-07-26 03:39:23,466 | INFO     | did not find any defunct processes belonging to 520009
[2025-07-26 05:39:53] 2025-07-26 03:39:23,469 | INFO     | did not find any defunct processes belonging to 520009
[2025-07-26 05:39:53] 2025-07-26 03:39:23,469 | INFO     | ready for new job
[2025-07-26 05:39:53] 2025-07-26 03:39:23,470 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 05:39:53] 2025-07-26 03:39:23,471 | INFO     | ***************************************
[2025-07-26 05:39:53] 2025-07-26 03:39:23,471 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 05:39:53] 2025-07-26 03:39:23,471 | INFO     | ***************************************
[2025-07-26 05:39:53] 2025-07-26 03:39:23,471 | INFO     | 
[2025-07-26 05:39:53] 2025-07-26 03:39:23,472 | INFO     | architecture information:
[2025-07-26 05:39:53] 2025-07-26 03:39:23,473 | INFO     | executing command: cat /etc/os-release
[2025-07-26 05:39:53] 2025-07-26 03:39:23,485 | INFO     | cat /etc/os-release:
[2025-07-26 05:39:53] NAME="CentOS Linux"
[2025-07-26 05:39:53] VERSION="7 (Core)"
[2025-07-26 05:39:53] ID="centos"
[2025-07-26 05:39:53] ID_LIKE="rhel fedora"
[2025-07-26 05:39:53] VERSION_ID="7"
[2025-07-26 05:39:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 05:39:53] ANSI_COLOR="0;31"
[2025-07-26 05:39:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 05:39:53] HOME_URL="https://www.centos.org/"
[2025-07-26 05:39:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 05:39:53] 
[2025-07-26 05:39:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 05:39:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 05:39:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 05:39:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 05:39:53] 
[2025-07-26 05:39:53] 2025-07-26 03:39:23,486 | INFO     | ***************************************
[2025-07-26 05:39:53] 2025-07-26 03:39:23,988 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-07-26 05:39:53] 2025-07-26 03:39:24,002 | INFO     | sufficient remaining disk space (709477007360 B)
[2025-07-26 05:39:53] 2025-07-26 03:39:24,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 05:39:53] 2025-07-26 03:39:24,003 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 05:39:53] 2025-07-26 03:39:24,003 | INFO     | update_server=False
[2025-07-26 05:39:53] 2025-07-26 03:39:24,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 05:39:53] 2025-07-26 03:39:24,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 05:39:53] 2025-07-26 03:39:24,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 05:39:53] 2025-07-26 03:39:24,159 | INFO     | all job control threads have been joined
[2025-07-26 05:39:53] 2025-07-26 03:39:24,262 | INFO     | all data control threads have been joined
[2025-07-26 05:39:53] 2025-07-26 03:39:24,501 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 05:39:53] 2025-07-26 03:39:24,501 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 05:39:53] 2025-07-26 03:39:24,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 05:39:53] 2025-07-26 03:39:24,501 | INFO     | will abort loop
[2025-07-26 05:39:53] 2025-07-26 03:39:24,660 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 05:39:53] 2025-07-26 03:39:25,008 | INFO     | [job] retrieve thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:25,008 | INFO     | [job] queue monitor thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:25,165 | INFO     | [job] control thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:25,172 | INFO     | [payload] validate_post thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:25,268 | INFO     | [data] control thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:25,339 | INFO     | all payload control threads have been joined
[2025-07-26 05:39:53] 2025-07-26 03:39:25,482 | INFO     | [data] copytool_in thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:25,507 | INFO     | [job] job monitor thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:25,852 | INFO     | [job] validate thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:25,905 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:26,009 | INFO     | [data] copytool_out thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:26,157 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:26,229 | INFO     | [payload] failed_post thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:26,234 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:26,343 | INFO     | [payload] control thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:28,665 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:35,030 | INFO     | job.realtimelogging is not enabled
[2025-07-26 05:39:53] 2025-07-26 03:39:36,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 05:39:53] 2025-07-26 03:39:36,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109095700288)>', '<ExcThread(monitor, started 140108334360320)>']
[2025-07-26 05:39:53] 2025-07-26 03:39:41,722 | INFO     | all workflow threads have been joined
[2025-07-26 05:39:53] 2025-07-26 03:39:41,722 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 05:39:53] 2025-07-26 03:39:41,722 | INFO     | traces error code: 0
[2025-07-26 05:39:53] 2025-07-26 03:39:41,722 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 05:39:53] 2025-07-26 03:39:53,544 | INFO     | PID=513247 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 05:39:53] 2025-07-26 03:39:53,545 | INFO     | .. there are 2 such processes running
[2025-07-26 05:39:53] 2025-07-26 03:39:53,545 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 05:39:53] 2025-07-26 03:39:53,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 05:39:53] 2025-07-26 03:39:53,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 05:39:53] 2025-07-26 03:39:53,545 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 05:39:53] 2025-07-26 03:39:53,545 | INFO     | [monitor] control thread has ended
[2025-07-26 05:39:53] 2025-07-26 03:39:53,653 [wrapper] ==== pilot stdout END ====
[2025-07-26 05:39:53] 2025-07-26 03:39:53,656 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 05:39:53] 2025-07-26 03:39:53,659 [wrapper] pilotpid: 513247
[2025-07-26 05:39:53] 2025-07-26 03:39:53,661 [wrapper] Pilot exit status: 0
[2025-07-26 05:39:53] 2025-07-26 03:39:53,671 [wrapper] pandaids: 6744944355
[2025-07-26 05:39:53] 2025-07-26 03:39:53,708 [wrapper] cleanup supervisor_pilot  571994 513248
[2025-07-26 05:39:53] 2025-07-26 03:39:53,711 [wrapper] Test setup, not cleaning
[2025-07-26 05:39:53] 2025-07-26 03:39:53,714 [wrapper] apfmon messages muted
[2025-07-26 05:39:53] 2025-07-26 03:39:53,716 [wrapper] ==== wrapper stdout END ====
[2025-07-26 05:39:53] 2025-07-26 03:39:53,719 [wrapper] ==== wrapper stderr END ====
[2025-07-26 05:39:53]  *** Error codes and diagnostics ***
[2025-07-26 05:39:53]     "exeErrorCode": 0,
[2025-07-26 05:39:53]     "exeErrorDiag": "",
[2025-07-26 05:39:53]     "pilotErrorCode": 0,
[2025-07-26 05:39:53]     "pilotErrorDiag": "",
[2025-07-26 05:39:53]  *** Listing of results directory ***
[2025-07-26 05:39:53] total 346636
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc    530466 Jul 25 02:24 pilot3.tar.gz
[2025-07-26 05:39:53] -rwx------ 1 boinc boinc     36292 Jul 25 02:26 runpilot2-wrapper.sh
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc      5112 Jul 25 02:26 queuedata.json
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc       100 Jul 26 04:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 05:39:53] -rwxr-xr-x 1 boinc boinc      7986 Jul 26 04:42 run_atlas
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc       105 Jul 26 04:42 job.xml
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc      6522 Jul 26 04:42 init_data.xml
[2025-07-26 05:39:53] -rw-r--r-- 2 boinc boinc 147472551 Jul 26 04:42 EVNT.45743347._000731.pool.root.1
[2025-07-26 05:39:53] -rw-r--r-- 2 boinc boinc     15095 Jul 26 04:42 start_atlas.sh
[2025-07-26 05:39:53] drwxrwx--x 2 boinc boinc      4096 Jul 26 04:42 shared
[2025-07-26 05:39:53] -rw-r--r-- 2 boinc boinc    542889 Jul 26 04:42 input.tar.gz
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc         0 Jul 26 04:42 boinc_lockfile
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc      2561 Jul 26 04:42 pandaJob.out
[2025-07-26 05:39:53] -rw------- 1 boinc boinc    979977 Jul 26 04:42 agis_schedconf.cvmfs.json
[2025-07-26 05:39:53] -rw------- 1 boinc boinc   1593052 Jul 26 04:42 agis_ddmendpoints.agis.ALL.json
[2025-07-26 05:39:53] drwx------ 4 boinc boinc      4096 Jul 26 04:42 pilot3
[2025-07-26 05:39:53] -rw------- 1 boinc boinc 202203644 Jul 26 05:38 HITS.45743349._013441.pool.root.1
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc       529 Jul 26 05:38 boinc_task_state.xml
[2025-07-26 05:39:53] -rw------- 1 boinc boinc        95 Jul 26 05:39 pilot_heartbeat.json
[2025-07-26 05:39:53] -rw------- 1 boinc boinc      1017 Jul 26 05:39 memory_monitor_summary.json
[2025-07-26 05:39:53] -rw------- 1 boinc boinc    347431 Jul 26 05:39 log.45743349._013441.job.log.tgz.1
[2025-07-26 05:39:53] -rw------- 1 boinc boinc      7779 Jul 26 05:39 heartbeat.json
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc      8192 Jul 26 05:39 boinc_mmap_file
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc        27 Jul 26 05:39 wrapper_checkpoint.txt
[2025-07-26 05:39:53] -rw------- 1 boinc boinc       821 Jul 26 05:39 pilotlog.txt
[2025-07-26 05:39:53] -rw------- 1 boinc boinc    354063 Jul 26 05:39 log.45743349._013441.job.log.1
[2025-07-26 05:39:53] -rw------- 1 boinc boinc       357 Jul 26 05:39 output.list
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc       620 Jul 26 05:39 runtime_log
[2025-07-26 05:39:53] -rw------- 1 boinc boinc    716800 Jul 26 05:39 result.tar.gz
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc      8721 Jul 26 05:39 runtime_log.err
[2025-07-26 05:39:53] -rw------- 1 boinc boinc       662 Jul 26 05:39 e47NDm4RLz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGIOLDmXdG02m.diag
[2025-07-26 05:39:53] -rw-r--r-- 1 boinc boinc     21626 Jul 26 05:39 stderr.txt
[2025-07-26 05:39:53] HITS file was successfully produced:
[2025-07-26 05:39:53] -rw------- 1 boinc boinc 202203644 Jul 26 05:38 shared/HITS.pool.root.1
[2025-07-26 05:39:53]  *** Contents of shared directory: ***
[2025-07-26 05:39:53] total 342744
[2025-07-26 05:39:53] -rw-r--r-- 2 boinc boinc 147472551 Jul 26 04:42 ATLAS.root_0
[2025-07-26 05:39:53] -rw-r--r-- 2 boinc boinc     15095 Jul 26 04:42 start_atlas.sh
[2025-07-26 05:39:53] -rw-r--r-- 2 boinc boinc    542889 Jul 26 04:42 input.tar.gz
[2025-07-26 05:39:53] -rw------- 1 boinc boinc 202203644 Jul 26 05:38 HITS.pool.root.1
[2025-07-26 05:39:53] -rw------- 1 boinc boinc    716800 Jul 26 05:39 result.tar.gz
05:39:54 (509456): run_atlas exited; CPU time 36579.219339
05:39:54 (509456): called boinc_finish(0)

</stderr_txt>
]]>

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