Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:55:33 (6846): wrapper (7.7.26015): starting
02:55:33 (6846): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 02:55:33] Arguments: --nthreads 8
[2025-07-25 02:55:33] Threads: 8
[2025-07-25 02:55:33] Checking for CVMFS
[2025-07-25 02:55:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 02:55:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 02:55:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 02:55:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 02:55:34] 2.11.2.0 1598 102110 114064 148730 3 59 19301683 20275201 917 130560 0 67788414 99.985 8077729 9184 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 02:55:34] CVMFS is ok
[2025-07-25 02:55:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 02:55:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 02:55:34] Further information can be found at the LHC@home message board.
[2025-07-25 02:55:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 02:55:34] Checking for apptainer binary...
[2025-07-25 02:55:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 02:55:34] Running /usr/bin/apptainer --version
[2025-07-25 02:55:34] apptainer version 1.3.2-1.el7
[2025-07-25 02:55:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 02:55:34] c-205-36.aglt2.org
[2025-07-25 02:55:34] apptainer works
[2025-07-25 02:55:34] Set ATHENA_PROC_NUMBER=8
[2025-07-25 02:55:34] Set ATHENA_CORE_NUMBER=8
[2025-07-25 02:55:34] Starting ATLAS job with PandaID=6744944354
[2025-07-25 02:55:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 04:10:35]  *** The last 200 lines of the pilot log: ***
[2025-07-25 04:10:35]  replicas=None
[2025-07-25 04:10:35]  scope=mc23_13p6TeV
[2025-07-25 04:10:35]  status=None
[2025-07-25 04:10:35]  status_code=0
[2025-07-25 04:10:35]  storage_token=
[2025-07-25 04:10:35]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744944354/log.45743349._013440.job.log.tgz.1
[2025-07-25 04:10:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/60/log.45743349._013440.job.log.tgz.1
[2025-07-25 04:10:35]  workdir=None
[2025-07-25 04:10:35] ]
[2025-07-25 04:10:35] 2025-07-25 08:09:56,730 | INFO     | transferring file log.45743349._013440.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744944354/log.45743349._013440.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 04:10:35] 2025-07-25 08:09:56,731 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744944354/log.45743349._013440.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._013440.job
[2025-07-25 04:10:35] 2025-07-25 08:09:56,750 | INFO     | adding to output.list: log.45743349._013440.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/60/log.45743349._013440.job.log.tg
[2025-07-25 04:10:35] 2025-07-25 08:09:56,751 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 04:10:35] 2025-07-25 08:09:56,751 | INFO     | summary of transferred files:
[2025-07-25 04:10:35] 2025-07-25 08:09:56,751 | INFO     |  -- lfn=log.45743349._013440.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 04:10:35] 2025-07-25 08:09:56,751 | INFO     | stage-out finished correctly
[2025-07-25 04:10:35] 2025-07-25 08:09:57,519 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 04:10:35] 2025-07-25 08:09:58,201 | INFO     | monitor loop #330: job 0:6744944354 is in state 'finished'
[2025-07-25 04:10:35] 2025-07-25 08:09:58,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 04:10:35] 2025-07-25 08:09:59,397 | INFO     | job 6744944354 has state=finished
[2025-07-25 04:10:35] 2025-07-25 08:09:59,398 | INFO     | preparing for final server update for job 6744944354 in state='finished'
[2025-07-25 04:10:35] 2025-07-25 08:09:59,398 | INFO     | this job has now completed (state=finished)
[2025-07-25 04:10:35] 2025-07-25 08:09:59,399 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 04:10:35] 2025-07-25 08:09:59,399 | INFO     | log transfer has been attempted: DONE
[2025-07-25 04:10:35] 2025-07-25 08:09:59,399 | INFO     | job 6744944354 has finished - writing final server update
[2025-07-25 04:10:35] 2025-07-25 08:09:59,399 | INFO     | total number of processed events: 400 (read)
[2025-07-25 04:10:35] 2025-07-25 08:09:59,400 | INFO     | executing command: lscpu
[2025-07-25 04:10:35] 2025-07-25 08:09:59,433 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 04:10:35] 2025-07-25 08:10:00,703 | INFO     | monitor loop #331: job 0:6744944354 is in state 'finished'
[2025-07-25 04:10:35] 2025-07-25 08:10:00,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 04:10:35] 2025-07-25 08:10:00,912 | INFO     | PID=10445 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-25 04:10:35] 2025-07-25 08:10:00,913 | INFO     | .. there are 2 such processes running
[2025-07-25 04:10:35] 2025-07-25 08:10:03,207 | INFO     | monitor loop #332: job 0:6744944354 is in state 'finished'
[2025-07-25 04:10:35] 2025-07-25 08:10:03,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 04:10:35] 2025-07-25 08:10:03,723 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 04:10:35] 2025-07-25 08:10:03,727 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2062.2433125
[2025-07-25 04:10:35] 2025-07-25 08:10:03,731 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744944354/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 04:10:35] 2025-07-25 08:10:03,731 | INFO     | extracted standard info from prmon json
[2025-07-25 04:10:35] 2025-07-25 08:10:03,732 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 04:10:35] 2025-07-25 08:10:03,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 04:10:35] 2025-07-25 08:10:03,732 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 04:10:35] 2025-07-25 08:10:03,732 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 04:10:35] 2025-07-25 08:10:03,733 | INFO     | fitting pss+swap vs Time
[2025-07-25 04:10:35] 2025-07-25 08:10:03,733 | INFO     | sum of square deviations: 89127252.5
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | sum of deviations: -4798117961.499999
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | mean x: 1753428859.5
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | mean y: 2568882.106060606
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | -- intersect: 94397473571.66113
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | intersect: 94397473571.66113
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | chi2: 0.04985536293325199
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | -- intersect: 94397473571.66113
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | current memory leak: -53.83 B/s (using 66 data points, chi2=0.05)
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | could have reported an average CPU frequency of 2272 MHz (6 samples)
[2025-07-25 04:10:35] 2025-07-25 08:10:03,734 | INFO     | ..............................
[2025-07-25 04:10:35] 2025-07-25 08:10:03,735 | INFO     | . Timing measurements:
[2025-07-25 04:10:35] 2025-07-25 08:10:03,735 | INFO     | . get job = 0 s
[2025-07-25 04:10:35] 2025-07-25 08:10:03,735 | INFO     | . initial setup = 2 s
[2025-07-25 04:10:35] 2025-07-25 08:10:03,735 | INFO     | . payload setup = 7 s
[2025-07-25 04:10:35] 2025-07-25 08:10:03,735 | INFO     | . stage-in = 0 s
[2025-07-25 04:10:35] 2025-07-25 08:10:03,735 | INFO     | . payload execution = 4423 s
[2025-07-25 04:10:35] 2025-07-25 08:10:03,735 | INFO     | . stage-out = 1 s
[2025-07-25 04:10:35] 2025-07-25 08:10:03,735 | INFO     | . log creation = 0 s
[2025-07-25 04:10:35] 2025-07-25 08:10:03,735 | INFO     | ..............................
[2025-07-25 04:10:35] 2025-07-25 08:10:03,791 | INFO     | 
[2025-07-25 04:10:35] 2025-07-25 08:10:03,791 | INFO     | job summary report
[2025-07-25 04:10:35] 2025-07-25 08:10:03,791 | INFO     | --------------------------------------------------
[2025-07-25 04:10:35] 2025-07-25 08:10:03,791 | INFO     | PanDA job id: 6744944354
[2025-07-25 04:10:35] 2025-07-25 08:10:03,791 | INFO     | task id: 45743349
[2025-07-25 04:10:35] 2025-07-25 08:10:03,792 | INFO     | errors: (none)
[2025-07-25 04:10:35] 2025-07-25 08:10:03,792 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 04:10:35] 2025-07-25 08:10:03,792 | INFO     | pilot state: finished 
[2025-07-25 04:10:35] 2025-07-25 08:10:03,792 | INFO     | transexitcode: 0
[2025-07-25 04:10:35] 2025-07-25 08:10:03,792 | INFO     | exeerrorcode: 0
[2025-07-25 04:10:35] 2025-07-25 08:10:03,792 | INFO     | exeerrordiag: 
[2025-07-25 04:10:35] 2025-07-25 08:10:03,792 | INFO     | exitcode: 0
[2025-07-25 04:10:35] 2025-07-25 08:10:03,792 | INFO     | exitmsg: OK
[2025-07-25 04:10:35] 2025-07-25 08:10:03,792 | INFO     | cpuconsumptiontime: 32884 s
[2025-07-25 04:10:35] 2025-07-25 08:10:03,793 | INFO     | nevents: 400
[2025-07-25 04:10:35] 2025-07-25 08:10:03,793 | INFO     | neventsw: 0
[2025-07-25 04:10:35] 2025-07-25 08:10:03,793 | INFO     | pid: 16907
[2025-07-25 04:10:35] 2025-07-25 08:10:03,793 | INFO     | pgrp: 16907
[2025-07-25 04:10:35] 2025-07-25 08:10:03,793 | INFO     | corecount: 8
[2025-07-25 04:10:35] 2025-07-25 08:10:03,793 | INFO     | event service: False
[2025-07-25 04:10:35] 2025-07-25 08:10:03,793 | INFO     | sizes: {0: 2397301, 1: 2397500, 5: 2397762, 11: 2397818, 4434: 2424004, 4436: 2433214, 4443: 2433352}
[2025-07-25 04:10:35] 2025-07-25 08:10:03,793 | INFO     | --------------------------------------------------
[2025-07-25 04:10:35] 2025-07-25 08:10:03,793 | INFO     | 
[2025-07-25 04:10:35] 2025-07-25 08:10:03,794 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 04:10:35] 2025-07-25 08:10:03,814 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,815 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,815 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,815 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,815 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,815 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,815 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,815 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,815 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,816 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,816 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,816 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,816 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,816 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,816 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,816 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,816 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,816 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 04:10:35] 2025-07-25 08:10:03,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,817 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 04:10:35] 2025-07-25 08:10:03,817 | INFO     | job 6744944354 has completed (purged errors)
[2025-07-25 04:10:35] 2025-07-25 08:10:03,817 | INFO     | overall cleanup function is called
[2025-07-25 04:10:35] 2025-07-25 08:10:04,823 | INFO     | --- collectZombieJob: --- 10, [16907]
[2025-07-25 04:10:35] 2025-07-25 08:10:04,823 | INFO     | zombie collector waiting for pid 16907
[2025-07-25 04:10:35] 2025-07-25 08:10:04,823 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 04:10:35] 2025-07-25 08:10:04,824 | INFO     | collected zombie processes
[2025-07-25 04:10:35] 2025-07-25 08:10:04,824 | INFO     | will attempt to kill all subprocesses of pid=16907
[2025-07-25 04:10:35] 2025-07-25 08:10:04,942 | INFO     | process IDs to be killed: [16907] (in reverse order)
[2025-07-25 04:10:35] 2025-07-25 08:10:04,999 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 04:10:35] 2025-07-25 08:10:05,000 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 04:10:35] 2025-07-25 08:10:05,003 | INFO     | did not find any defunct processes belonging to 16907
[2025-07-25 04:10:35] 2025-07-25 08:10:05,006 | INFO     | did not find any defunct processes belonging to 16907
[2025-07-25 04:10:35] 2025-07-25 08:10:05,006 | INFO     | ready for new job
[2025-07-25 04:10:35] 2025-07-25 08:10:05,007 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 04:10:35] 2025-07-25 08:10:05,008 | INFO     | ***************************************
[2025-07-25 04:10:35] 2025-07-25 08:10:05,008 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 04:10:35] 2025-07-25 08:10:05,009 | INFO     | ***************************************
[2025-07-25 04:10:35] 2025-07-25 08:10:05,009 | INFO     | 
[2025-07-25 04:10:35] 2025-07-25 08:10:05,010 | INFO     | architecture information:
[2025-07-25 04:10:35] 2025-07-25 08:10:05,010 | INFO     | executing command: cat /etc/os-release
[2025-07-25 04:10:35] 2025-07-25 08:10:05,025 | INFO     | cat /etc/os-release:
[2025-07-25 04:10:35] NAME="CentOS Linux"
[2025-07-25 04:10:35] VERSION="7 (Core)"
[2025-07-25 04:10:35] ID="centos"
[2025-07-25 04:10:35] ID_LIKE="rhel fedora"
[2025-07-25 04:10:35] VERSION_ID="7"
[2025-07-25 04:10:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 04:10:35] ANSI_COLOR="0;31"
[2025-07-25 04:10:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 04:10:35] HOME_URL="https://www.centos.org/"
[2025-07-25 04:10:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 04:10:35] 
[2025-07-25 04:10:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 04:10:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 04:10:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 04:10:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 04:10:35] 
[2025-07-25 04:10:35] 2025-07-25 08:10:05,025 | INFO     | ***************************************
[2025-07-25 04:10:35] 2025-07-25 08:10:05,528 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 04:10:35] 2025-07-25 08:10:05,544 | INFO     | sufficient remaining disk space (32960937984 B)
[2025-07-25 04:10:35] 2025-07-25 08:10:05,545 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 04:10:35] 2025-07-25 08:10:05,545 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 04:10:35] 2025-07-25 08:10:05,545 | INFO     | update_server=False
[2025-07-25 04:10:35] 2025-07-25 08:10:05,545 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 04:10:35] 2025-07-25 08:10:05,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 04:10:35] 2025-07-25 08:10:05,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 04:10:35] 2025-07-25 08:10:05,710 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 04:10:35] 2025-07-25 08:10:05,710 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 04:10:35] 2025-07-25 08:10:05,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 04:10:35] 2025-07-25 08:10:05,711 | INFO     | will abort loop
[2025-07-25 04:10:35] 2025-07-25 08:10:06,344 | INFO     | all data control threads have been joined
[2025-07-25 04:10:35] 2025-07-25 08:10:06,545 | INFO     | all job control threads have been joined
[2025-07-25 04:10:35] 2025-07-25 08:10:06,551 | INFO     | [job] retrieve thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:06,552 | INFO     | [job] queue monitor thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:06,713 | INFO     | [job] job monitor thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:06,778 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:06,779 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:06,945 | INFO     | all payload control threads have been joined
[2025-07-25 04:10:35] 2025-07-25 08:10:06,979 | INFO     | [payload] failed_post thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:07,349 | INFO     | [data] control thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:07,551 | INFO     | [job] control thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:07,552 | INFO     | [data] copytool_out thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:07,559 | INFO     | [payload] validate_post thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:07,953 | INFO     | [payload] control thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:07,986 | INFO     | [data] copytool_in thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:07,991 | INFO     | [job] validate thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:07,991 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:08,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 04:10:35] 2025-07-25 08:10:12,117 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:16,166 | INFO     | job.realtimelogging is not enabled
[2025-07-25 04:10:35] 2025-07-25 08:10:17,171 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 04:10:35] 2025-07-25 08:10:18,328 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520678700864)>', '<ExcThread(monitor, started 140520089171712)>']
[2025-07-25 04:10:35] 2025-07-25 08:10:23,352 | INFO     | all workflow threads have been joined
[2025-07-25 04:10:35] 2025-07-25 08:10:23,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 04:10:35] 2025-07-25 08:10:23,353 | INFO     | traces error code: 0
[2025-07-25 04:10:35] 2025-07-25 08:10:23,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 04:10:35] 2025-07-25 08:10:35,134 | INFO     | PID=10445 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-25 04:10:35] 2025-07-25 08:10:35,134 | INFO     | .. there are 2 such processes running
[2025-07-25 04:10:35] 2025-07-25 08:10:35,134 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 04:10:35] 2025-07-25 08:10:35,135 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 04:10:35] 2025-07-25 08:10:35,135 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 04:10:35] 2025-07-25 08:10:35,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 04:10:35] 2025-07-25 08:10:35,135 | INFO     | [monitor] control thread has ended
[2025-07-25 04:10:35] 2025-07-25 08:10:35,258 [wrapper] ==== pilot stdout END ====
[2025-07-25 04:10:35] 2025-07-25 08:10:35,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 04:10:35] 2025-07-25 08:10:35,264 [wrapper] pilotpid: 10445
[2025-07-25 04:10:35] 2025-07-25 08:10:35,268 [wrapper] Pilot exit status: 0
[2025-07-25 04:10:35] 2025-07-25 08:10:35,280 [wrapper] pandaids: 6744944354
[2025-07-25 04:10:35] 2025-07-25 08:10:35,320 [wrapper] cleanup supervisor_pilot 28723 10446
[2025-07-25 04:10:35] 2025-07-25 08:10:35,323 [wrapper] Test setup, not cleaning
[2025-07-25 04:10:35] 2025-07-25 08:10:35,327 [wrapper] apfmon messages muted
[2025-07-25 04:10:35] 2025-07-25 08:10:35,330 [wrapper] ==== wrapper stdout END ====
[2025-07-25 04:10:35] 2025-07-25 08:10:35,334 [wrapper] ==== wrapper stderr END ====
[2025-07-25 04:10:35]  *** Error codes and diagnostics ***
[2025-07-25 04:10:35]     "exeErrorCode": 0,
[2025-07-25 04:10:35]     "exeErrorDiag": "",
[2025-07-25 04:10:35]     "pilotErrorCode": 0,
[2025-07-25 04:10:35]     "pilotErrorDiag": "",
[2025-07-25 04:10:35]  *** Listing of results directory ***
[2025-07-25 04:10:35] total 347852
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas    530466 Jul 24 20:24 pilot3.tar.gz
[2025-07-25 04:10:35] -rwx------ 1 boincer umatlas     36292 Jul 24 20:26 runpilot2-wrapper.sh
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas      5112 Jul 24 20:26 queuedata.json
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas       100 Jul 25 02:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 04:10:35] -rwxr-xr-x 1 boincer umatlas      7986 Jul 25 02:55 run_atlas
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas       105 Jul 25 02:55 job.xml
[2025-07-25 04:10:35] -rw-r--r-- 2 boincer umatlas 147472551 Jul 25 02:55 EVNT.45743347._000731.pool.root.1
[2025-07-25 04:10:35] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 02:55 start_atlas.sh
[2025-07-25 04:10:35] drwxrwx--x 2 boincer umatlas      4096 Jul 25 02:55 shared
[2025-07-25 04:10:35] -rw-r--r-- 2 boincer umatlas    542891 Jul 25 02:55 input.tar.gz
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas         0 Jul 25 02:55 boinc_lockfile
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas      2561 Jul 25 02:55 pandaJob.out
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas    979701 Jul 25 02:55 agis_schedconf.cvmfs.json
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas   1593052 Jul 25 02:55 agis_ddmendpoints.agis.ALL.json
[2025-07-25 04:10:35] drwx------ 4 boincer umatlas      4096 Jul 25 02:55 pilot3
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas 203373061 Jul 25 04:09 HITS.45743349._013440.pool.root.1
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas       529 Jul 25 04:09 boinc_task_state.xml
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas        95 Jul 25 04:09 pilot_heartbeat.json
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas      1047 Jul 25 04:09 memory_monitor_summary.json
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas    297763 Jul 25 04:09 log.45743349._013440.job.log.tgz.1
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas      7834 Jul 25 04:10 heartbeat.json
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas      6048 Jul 25 04:10 init_data.xml
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas      8192 Jul 25 04:10 boinc_mmap_file
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas        27 Jul 25 04:10 wrapper_checkpoint.txt
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas       820 Jul 25 04:10 pilotlog.txt
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas    443200 Jul 25 04:10 log.45743349._013440.job.log.1
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas       357 Jul 25 04:10 output.list
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas       620 Jul 25 04:10 runtime_log
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas    757760 Jul 25 04:10 result.tar.gz
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas       658 Jul 25 04:10 zv6NDm4RLz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFIOLDmhN4xJn.diag
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas      8660 Jul 25 04:10 runtime_log.err
[2025-07-25 04:10:35] -rw-r--r-- 1 boincer umatlas     21874 Jul 25 04:10 stderr.txt
[2025-07-25 04:10:35] HITS file was successfully produced:
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas 203373061 Jul 25 04:09 shared/HITS.pool.root.1
[2025-07-25 04:10:35]  *** Contents of shared directory: ***
[2025-07-25 04:10:35] total 343920
[2025-07-25 04:10:35] -rw-r--r-- 2 boincer umatlas 147472551 Jul 25 02:55 ATLAS.root_0
[2025-07-25 04:10:35] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 02:55 start_atlas.sh
[2025-07-25 04:10:35] -rw-r--r-- 2 boincer umatlas    542891 Jul 25 02:55 input.tar.gz
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas 203373061 Jul 25 04:09 HITS.pool.root.1
[2025-07-25 04:10:35] -rw------- 1 boincer umatlas    757760 Jul 25 04:10 result.tar.gz
04:10:36 (6846): run_atlas exited; CPU time 32892.965206
04:10:36 (6846): called boinc_finish(0)

</stderr_txt>
]]>

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