Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 07:02:43 (6712): Detected: vboxwrapper 26206
2025-07-25 07:02:43 (6712): Detected: BOINC client v8.2.4
2025-07-25 07:02:48 (6712): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-07-25 07:02:48 (6712): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 07:02:49 (6712): Create VM. (boinc_653aff5e69c11494, slot#0)
2025-07-25 07:02:51 (6712): Setting Memory Size for VM. (4200MB)
2025-07-25 07:02:52 (6712): Setting CPU Count for VM. (2)
2025-07-25 07:02:52 (6712): Setting Chipset Options for VM.
2025-07-25 07:02:53 (6712): Setting Graphics Controller Options for VM.
2025-07-25 07:02:53 (6712): Setting Boot Options for VM.
2025-07-25 07:02:54 (6712): Setting Network Configuration for NAT.
2025-07-25 07:02:55 (6712): Enabling VM Network Access.
2025-07-25 07:02:55 (6712): Disabling USB Support for VM.
2025-07-25 07:02:56 (6712): Disabling COM Port Support for VM.
2025-07-25 07:02:56 (6712): Disabling LPT Port Support for VM.
2025-07-25 07:02:57 (6712): Disabling Audio Support for VM.
2025-07-25 07:02:58 (6712): Disabling Clipboard Support for VM.
2025-07-25 07:02:58 (6712): Disabling Drag and Drop Support for VM.
2025-07-25 07:02:59 (6712): Adding storage controller(s) to VM.
2025-07-25 07:02:59 (6712): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 07:03:05 (6712): Adding VirtualBox Guest Additions to VM.
2025-07-25 07:03:05 (6712): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 07:03:06 (6712): forwarding host port 57562 to guest port 80
2025-07-25 07:03:07 (6712): Enabling remote desktop for VM.
2025-07-25 07:03:07 (6712): Required extension pack not installed, remote desktop not enabled.
2025-07-25 07:03:07 (6712): Enabling shared directory for VM.
2025-07-25 07:03:08 (6712): Starting VM using VBoxManage interface. (boinc_653aff5e69c11494, slot#0)
2025-07-25 07:03:31 (6712): Successfully started VM. (PID = '232')
2025-07-25 07:03:31 (6712): Reporting VM Process ID to BOINC.
2025-07-25 07:03:31 (6712): Guest Log: BIOS: VirtualBox 7.1.10
2025-07-25 07:03:31 (6712): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 07:03:31 (6712): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 07:03:31 (6712): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 07:03:31 (6712): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 07:03:31 (6712): Detected: Web Application Enabled (http://localhost:57562)
2025-07-25 07:03:31 (6712): Preference change detected
2025-07-25 07:03:32 (6712): Setting CPU throttle for VM. (100%)
2025-07-25 07:03:32 (6712): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 07:03:39 (6712): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 07:03:39 (6712): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 07:03:39 (6712): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 07:03:39 (6712): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 07:03:39 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 07:03:39 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 07:03:39 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 07:03:39 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 07:03:39 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 07:03:39 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 07:03:39 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 07:03:39 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 07:03:43 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 07:03:57 (6712): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 07:03:57 (6712): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 07:04:39 (6712): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 07:04:39 (6712): Guest Log: 00:00:00.000917 main     Log opened 2025-07-25T07:04:37.009853000Z
2025-07-25 07:04:39 (6712): Guest Log: 00:00:00.001608 main     OS Product: Linux
2025-07-25 07:04:39 (6712): Guest Log: 00:00:00.001881 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 07:04:39 (6712): Guest Log: 00:00:00.002021 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 07:04:39 (6712): Guest Log: 00:00:00.002269 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 07:04:39 (6712): Guest Log: 00:00:00.002274 main     Process ID: 1256
2025-07-25 07:04:39 (6712): Guest Log: 00:00:00.002278 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 07:04:39 (6712): Guest Log: 00:00:00.007093 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 07:04:41 (6712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 07:04:41 (6712): Guest Log: [INFO] Mounting shared directory
2025-07-25 07:04:41 (6712): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 07:04:49 (6712): Guest Log: 00:00:10.018572 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 151 752 000ns (GuestNow=1 753 416 288 874 800 000 ns GuestLast=1 753 427 077 026 552 000 ns fSetTimeLastLoop=true )
2025-07-25 07:04:56 (6712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 07:04:56 (6712): Guest Log: [INFO] Detected branch: prod
2025-07-25 07:04:57 (6712): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 07:04:57 (6712): Guest Log: Copying input files
2025-07-25 07:05:05 (6712): Guest Log: Copied input files into RunAtlas.
2025-07-25 07:05:05 (6712): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 07:05:05 (6712): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 07:05:05 (6712): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 07:05:05 (6712): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 07:05:39 (6712): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 07:05:39 (6712): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 07:05:39 (6712): Guest Log: 2.6.3.0 1532 0 30300 148726 3 1 3120517 4096000 0 65024 0 0 n/a 1291 829 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 07:05:50 (6712): Guest Log: copied the webapp to /var/www
2025-07-25 07:05:50 (6712): Guest Log: ATHENA_PROC_NUMBER=2
2025-07-25 07:05:50 (6712): Guest Log: ATHENA_CORE_NUMBER=2
2025-07-25 07:05:50 (6712): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 07:05:51 (6712): Guest Log:  *** Starting ATLAS job. (PandaID=6744934714 taskID=45743349) ***
2025-07-25 07:28:21 (6712): Guest Log:  *** Job finished ***
2025-07-25 07:28:21 (6712): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:27:42,420 | INFO     | all workflow threads have been joined
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:27:42,423 | INFO     | end of generic workflow (traces error code: 0)
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:27:42,425 | INFO     | traces error code: 0
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:27:42,426 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:01,880 | INFO     | PID=5851 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:01,884 | INFO     | found 0 job(s) in 20 queues
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:01,885 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:01,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:01,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:01,888 | INFO     | [monitor] control thread has ended
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:02,748 [wrapper] ==== pilot stdout END ====
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:02,796 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:02,848 [wrapper] pilotpid: 5851
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:02,887 [wrapper] Pilot exit status: 0
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:03,109 [wrapper] pandaids: 6744934714
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:03,363 [wrapper] cleanup supervisor_pilot 28919 5852
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:03,403 [wrapper] Test setup, not cleaning
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:03,449 [wrapper] apfmon messages muted
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:03,490 [wrapper] ==== wrapper stdout END ====
2025-07-25 07:28:21 (6712): Guest Log: 2025-07-25 04:28:03,531 [wrapper] ==== wrapper stderr END ====
2025-07-25 07:28:21 (6712): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 07:28:21 (6712): Guest Log:     "exeErrorCode": 65,
2025-07-25 07:28:21 (6712): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-25 07:28:21 (6712): Guest Log:     "pilotErrorCode": 1305,
2025-07-25 07:28:21 (6712): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-25 07:28:21 (6712): Guest Log:  *** Listing of results directory ***
2025-07-25 07:28:21 (6712): Guest Log: total 4356
2025-07-25 07:28:21 (6712): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 24 21:32 pilot3.tar.gz
2025-07-25 07:28:21 (6712): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 24 21:52 queuedata.json
2025-07-25 07:28:21 (6712): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 24 21:54 runpilot2-wrapper.sh
2025-07-25 07:28:21 (6712): Guest Log: -rwxr-xr-x. 1 atlas atlas    8193 Jul 25 04:05 init_data.xml
2025-07-25 07:28:21 (6712): Guest Log: -rwxr-xr-x. 1 atlas atlas  542883 Jul 25 04:05 input.tar.gz
2025-07-25 07:28:21 (6712): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 25 04:05 start_atlas.sh
2025-07-25 07:28:21 (6712): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 25 04:05 EVNT.45743347._000604.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 07:28:21 (6712): Guest Log: -rw-r--r--. 1 atlas atlas    2562 Jul 25 04:05 pandaJob.out
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas  979709 Jul 25 04:07 agis_schedconf.cvmfs.json
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas 1593052 Jul 25 04:07 agis_ddmendpoints.agis.ALL.json
2025-07-25 07:28:21 (6712): Guest Log: drwx------. 4 atlas atlas    4096 Jul 25 04:07 pilot3
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas   58542 Jul 25 04:24 log.45743349._010886.job.log.tgz.1
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas      95 Jul 25 04:27 pilot_heartbeat.json
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas    8166 Jul 25 04:27 heartbeat.json
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas     744 Jul 25 04:28 pilotlog.txt
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas  272402 Jul 25 04:28 log.45743349._010886.job.log.1
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas     188 Jul 25 04:28 output.list
2025-07-25 07:28:21 (6712): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 25 04:28 runtime_log
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas  348160 Jul 25 04:28 result.tar.gz
2025-07-25 07:28:21 (6712): Guest Log: -rw-------. 1 atlas atlas     650 Jul 25 04:28 vIULDmr4Iz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKuNLDmZ4mBEm.diag
2025-07-25 07:28:21 (6712): Guest Log: -rw-r--r--. 1 atlas atlas    8440 Jul 25 04:28 runtime_log.err
2025-07-25 07:28:21 (6712): Guest Log: Looking for outputfile HITS.45743349._010886.pool.root.1
2025-07-25 07:28:21 (6712): Guest Log: No HITS file was produced
2025-07-25 07:28:21 (6712): Guest Log: Successfully finished the ATLAS job!
2025-07-25 07:28:21 (6712): Guest Log: Copying the results back to the shared directory!
2025-07-25 07:28:21 (6712): Guest Log:  *** Contents of shared directory: ***
2025-07-25 07:28:21 (6712): Guest Log: total 224372
2025-07-25 07:28:21 (6712): Guest Log: -rwxrwxrwx. 1 root root 228831792 Jul 25 04:02 ATLAS.root_0
2025-07-25 07:28:21 (6712): Guest Log: -rwxrwxrwx. 1 root root      8193 Jul 25 04:02 init_data.xml
2025-07-25 07:28:21 (6712): Guest Log: -rwxrwxrwx. 1 root root    542883 Jul 25 03:20 input.tar.gz
2025-07-25 07:28:21 (6712): Guest Log: -rwxrwxrwx. 1 root root    348160 Jul 25 04:28 result.tar.gz
2025-07-25 07:28:21 (6712): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 03:20 start_atlas.sh
2025-07-25 07:28:21 (6712): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 07:28:21 (6712): Guest Log: 00:23:40.360158 control  Guest control service stopped
2025-07-25 07:28:21 (6712): Guest Log: 00:23:40.815839 control  Guest control worker returned with rc=VINF_SUCCESS
2025-07-25 07:28:21 (6712): Guest Log: 00:23:40.816215 main     Session 0 is about to close ...
2025-07-25 07:28:21 (6712): Guest Log: 00:23:40.816476 main     Stopping all guest processes ...
2025-07-25 07:28:21 (6712): Guest Log: 00:23:40.816613 main     Closing all guest files ...
2025-07-25 07:28:21 (6712): Guest Log: 00:23:40.954809 main     Ended.
2025-07-25 07:28:21 (6712): VM Completion File Detected.
2025-07-25 07:28:22 (6712): Powering off VM.
2025-07-25 07:29:20 (6712): Error in poweroff VM for VM: -182
Command:
VBoxManage -q controlvm "boinc_653aff5e69c11494" poweroff
Output:
0%...10%...20%...30%...40%...50%...
2025-07-25 07:29:20 (6712): VM did not power off when requested.
2025-07-25 07:29:20 (6712): VM was successfully terminated.
2025-07-25 07:29:20 (6712): Deregistering VM. (boinc_653aff5e69c11494, slot#0)
2025-07-25 07:30:06 (6712): Removing network bandwidth throttle group from VM.
2025-07-25 07:30:08 (6712): Removing VM from VirtualBox.
07:30:17 (6712): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN