Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:07:44 (362287): wrapper (7.7.26015): starting
20:07:44 (362287): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 20:07:44] Arguments: --nthreads 12
[2025-07-24 20:07:44] Threads: 12
[2025-07-24 20:07:44] Checking for CVMFS
[2025-07-24 20:07:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 20:07:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 20:07:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 20:07:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 20:07:47] 2.11.5.0 6885 33703 371684 148723 0 629 36185965 45568001 15398 130560 0 278780606 99.775 192497894 24150 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-24 20:07:47] CVMFS is ok
[2025-07-24 20:07:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 20:07:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 20:07:47] Further information can be found at the LHC@home message board.
[2025-07-24 20:07:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 20:07:47] Checking for apptainer binary...
[2025-07-24 20:07:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 20:07:47] Running /usr/bin/apptainer --version
[2025-07-24 20:07:47] apptainer version 1.4.1-1.el9
[2025-07-24 20:07:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 20:07:47] wns0076.triumf.lcg
[2025-07-24 20:07:47] apptainer works
[2025-07-24 20:07:47] Set ATHENA_PROC_NUMBER=12
[2025-07-24 20:07:47] Set ATHENA_CORE_NUMBER=12
[2025-07-24 20:07:48] Starting ATLAS job with PandaID=6744941631
[2025-07-24 20:07:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 20:12:09]  *** The last 200 lines of the pilot log: ***
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | WARNING  | wrong length of table data, x=[1753412948.0], y=[1815.0] (must be same and length>=4)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | INFO     | could have reported an average CPU frequency of 2591 MHz (4 samples)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | INFO     | ..............................
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | INFO     | . Timing measurements:
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . get job = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . initial setup = 3 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . payload setup = 13 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . stage-in = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . payload execution = 30 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . stage-out = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . log creation = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | ..............................
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744941631/pilotlog.txt
[2025-07-24 20:12:09] 2025-07-25 03:11:35,532 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-24 20:12:09] - Log from pilotlog.txt -
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744941631/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | INFO     | extracted standard info from prmon json
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | WARNING  | wrong length of table data, x=[1753412948.0], y=[1815.0] (must be same and length>=4)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | INFO     | could have reported an average CPU frequency of 2591 MHz (4 samples)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | INFO     | ..............................
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | INFO     | . Timing measurements:
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . get job = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . initial setup = 3 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . payload setup = 13 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . stage-in = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . payload execution = 30 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . stage-out = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . log creation = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | ..............................
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744941631/pilotlog.txt
[2025-07-24 20:12:09] 2025-07-25 03:11:35,533 | WARNING  | 
[2025-07-24 20:12:09] [begin log extracts]
[2025-07-24 20:12:09] - Log from pilotlog.txt -
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744941631/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | INFO     | extracted standard info from prmon json
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 20:12:09] 2025-07-25 03:11:35,515 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | WARNING  | wrong length of table data, x=[1753412948.0], y=[1815.0] (must be same and length>=4)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | INFO     | could have reported an average CPU frequency of 2591 MHz (4 samples)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | INFO     | ..............................
[2025-07-24 20:12:09] 2025-07-25 03:11:35,516 | INFO     | . Timing measurements:
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . get job = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . initial setup = 3 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . payload setup = 13 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . stage-in = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . payload execution = 30 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . stage-out = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | . log creation = 0 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | ..............................
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 20:12:09] 2025-07-25 03:11:35,517 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744941631/pilotlog.txt
[2025-07-24 20:12:09] [end log extracts]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,533 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,533 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | 
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | job summary report
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | --------------------------------------------------
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | PanDA job id: 6744941631
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | task id: 45743349
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-24 20:09:22,870 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | pilot state: failed 
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | transexitcode: 65
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | exeerrorcode: 65
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | exitcode: 65
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | cpuconsumptiontime: 17 s
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | nevents: 0
[2025-07-24 20:12:09] 2025-07-25 03:11:35,976 | INFO     | neventsw: 0
[2025-07-24 20:12:09] 2025-07-25 03:11:35,977 | INFO     | pid: 372239
[2025-07-24 20:12:09] 2025-07-25 03:11:35,977 | INFO     | pgrp: 372239
[2025-07-24 20:12:09] 2025-07-25 03:11:35,977 | INFO     | corecount: 12
[2025-07-24 20:12:09] 2025-07-25 03:11:35,977 | INFO     | event service: False
[2025-07-24 20:12:09] 2025-07-25 03:11:35,977 | INFO     | sizes: {0: 2397470, 11: 2397470, 14: 2397760, 22: 2397788, 47: 2421161, 48: 2425453, 51: 2425609, 173: 2425775}
[2025-07-24 20:12:09] 2025-07-25 03:11:35,977 | INFO     | --------------------------------------------------
[2025-07-24 20:12:09] 2025-07-25 03:11:35,977 | INFO     | 
[2025-07-24 20:12:09] 2025-07-25 03:11:35,977 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-24 20:12:09] 2025-07-25 03:11:35,993 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,993 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,993 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,993 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,993 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 20:12:09] 2025-07-25 03:11:35,994 | INFO     | job 6744941631 has completed (purged errors)
[2025-07-24 20:12:09] 2025-07-25 03:11:35,995 | INFO     | overall cleanup function is called
[2025-07-24 20:12:09] 2025-07-25 03:11:37,003 | INFO     | --- collectZombieJob: --- 10, [372239]
[2025-07-24 20:12:09] 2025-07-25 03:11:37,004 | INFO     | zombie collector waiting for pid 372239
[2025-07-24 20:12:09] 2025-07-25 03:11:37,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 20:12:09] 2025-07-25 03:11:37,004 | INFO     | collected zombie processes
[2025-07-24 20:12:09] 2025-07-25 03:11:37,004 | INFO     | will attempt to kill all subprocesses of pid=372239
[2025-07-24 20:12:09] 2025-07-25 03:11:37,369 | INFO     | process IDs to be killed: [372239] (in reverse order)
[2025-07-24 20:12:09] 2025-07-25 03:11:37,442 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 20:12:09] 2025-07-25 03:11:37,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 20:12:09] 2025-07-25 03:11:37,451 | INFO     | did not find any defunct processes belonging to 372239
[2025-07-24 20:12:09] 2025-07-25 03:11:37,459 | INFO     | did not find any defunct processes belonging to 372239
[2025-07-24 20:12:09] 2025-07-25 03:11:37,459 | INFO     | ready for new job
[2025-07-24 20:12:09] 2025-07-25 03:11:37,459 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 20:12:09] 2025-07-25 03:11:37,461 | INFO     | ***************************************
[2025-07-24 20:12:09] 2025-07-25 03:11:37,461 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 20:12:09] 2025-07-25 03:11:37,461 | INFO     | ***************************************
[2025-07-24 20:12:09] 2025-07-25 03:11:37,461 | INFO     | 
[2025-07-24 20:12:09] 2025-07-25 03:11:37,463 | INFO     | architecture information:
[2025-07-24 20:12:09] 2025-07-25 03:11:37,463 | INFO     | executing command: cat /etc/os-release
[2025-07-24 20:12:09] 2025-07-25 03:11:37,475 | INFO     | cat /etc/os-release:
[2025-07-24 20:12:09] NAME="CentOS Linux"
[2025-07-24 20:12:09] VERSION="7 (Core)"
[2025-07-24 20:12:09] ID="centos"
[2025-07-24 20:12:09] ID_LIKE="rhel fedora"
[2025-07-24 20:12:09] VERSION_ID="7"
[2025-07-24 20:12:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 20:12:09] ANSI_COLOR="0;31"
[2025-07-24 20:12:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 20:12:09] HOME_URL="https://www.centos.org/"
[2025-07-24 20:12:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 20:12:09] 
[2025-07-24 20:12:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 20:12:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 20:12:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 20:12:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 20:12:09] 
[2025-07-24 20:12:09] 2025-07-25 03:11:37,475 | INFO     | ***************************************
[2025-07-24 20:12:09] 2025-07-25 03:11:37,980 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-24 20:12:09] 2025-07-25 03:11:38,024 | INFO     | sufficient remaining disk space (2009080004608 B)
[2025-07-24 20:12:09] 2025-07-25 03:11:38,025 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 20:12:09] 2025-07-25 03:11:38,025 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 20:12:09] 2025-07-25 03:11:38,025 | INFO     | update_server=False
[2025-07-24 20:12:09] 2025-07-25 03:11:38,025 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 20:12:09] 2025-07-25 03:11:38,032 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 20:12:09] 2025-07-25 03:11:38,647 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 20:12:09] 2025-07-25 03:11:38,648 | INFO     | aborting loop
[2025-07-24 20:12:09] 2025-07-25 03:11:38,922 | INFO     | all payload control threads have been joined
[2025-07-24 20:12:09] 2025-07-25 03:11:39,033 | INFO     | [job] retrieve thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:39,049 | INFO     | all data control threads have been joined
[2025-07-24 20:12:09] 2025-07-25 03:11:39,088 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 20:12:09] 2025-07-25 03:11:39,122 | INFO     | all job control threads have been joined
[2025-07-24 20:12:09] 2025-07-25 03:11:39,300 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:39,653 | INFO     | [job] job monitor thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:39,865 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:39,919 | INFO     | [payload] failed_post thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:39,929 | INFO     | [payload] control thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:40,016 | INFO     | [job] validate thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:40,055 | INFO     | [data] control thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:40,098 | INFO     | [payload] validate_post thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:40,128 | INFO     | [job] control thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:40,129 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:40,269 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:40,504 | INFO     | [data] copytool_in thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:40,611 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 20:12:09] 2025-07-25 03:11:41,104 | INFO     | [data] copytool_out thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:41,617 | INFO     | [job] queue monitor thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:42,038 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 20:12:09] 2025-07-25 03:11:44,096 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140336183465792)>', '<ExcThread(monitor, started 140335464294144)>']
[2025-07-24 20:12:09] 2025-07-25 03:11:49,122 | INFO     | all workflow threads have been joined
[2025-07-24 20:12:09] 2025-07-25 03:11:49,122 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 20:12:09] 2025-07-25 03:11:49,123 | INFO     | traces error code: 0
[2025-07-24 20:12:09] 2025-07-25 03:11:49,123 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 20:12:09] 2025-07-25 03:12:08,939 | INFO     | PID=365880 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-24 20:12:09] 2025-07-25 03:12:08,940 | INFO     | .. there are 28 such processes running
[2025-07-24 20:12:09] 2025-07-25 03:12:08,940 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 20:12:09] 2025-07-25 03:12:08,940 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 20:12:09] 2025-07-25 03:12:08,940 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 20:12:09] 2025-07-25 03:12:08,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 20:12:09] 2025-07-25 03:12:08,940 | INFO     | [monitor] control thread has ended
[2025-07-24 20:12:09] 2025-07-25 03:12:09,099 [wrapper] ==== pilot stdout END ====
[2025-07-24 20:12:09] 2025-07-25 03:12:09,101 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 20:12:09] 2025-07-25 03:12:09,103 [wrapper] pilotpid: 365880
[2025-07-24 20:12:09] 2025-07-25 03:12:09,105 [wrapper] Pilot exit status: 0
[2025-07-24 20:12:09] 2025-07-25 03:12:09,114 [wrapper] pandaids: 6744941631
[2025-07-24 20:12:09] 2025-07-25 03:12:09,159 [wrapper] cleanup supervisor_pilot  365886 365881
[2025-07-24 20:12:09] 2025-07-25 03:12:09,162 [wrapper] Test setup, not cleaning
[2025-07-24 20:12:09] 2025-07-25 03:12:09,163 [wrapper] apfmon messages muted
[2025-07-24 20:12:09] 2025-07-25 03:12:09,165 [wrapper] ==== wrapper stdout END ====
[2025-07-24 20:12:09] 2025-07-25 03:12:09,167 [wrapper] ==== wrapper stderr END ====
[2025-07-24 20:12:09]  *** Error codes and diagnostics ***
[2025-07-24 20:12:09]     "exeErrorCode": 65,
[2025-07-24 20:12:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 20:12:09]     "pilotErrorCode": 1305,
[2025-07-24 20:12:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 20:12:09]  *** Listing of results directory ***
[2025-07-24 20:12:09] total 147412
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc    530466 Jul 24 16:14 pilot3.tar.gz
[2025-07-24 20:12:09] -rwx------. 1 boinc boinc     36292 Jul 24 16:58 runpilot2-wrapper.sh
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc      5112 Jul 24 16:58 queuedata.json
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc       100 Jul 24 20:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 20:12:09] -rwxr-xr-x. 1 boinc boinc      7986 Jul 24 20:07 run_atlas
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc       105 Jul 24 20:07 job.xml
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc      6595 Jul 24 20:07 init_data.xml
[2025-07-24 20:12:09] -rw-r--r--. 2 boinc boinc 146867512 Jul 24 20:07 EVNT.45743347._000702.pool.root.1
[2025-07-24 20:12:09] -rw-r--r--. 2 boinc boinc     15095 Jul 24 20:07 start_atlas.sh
[2025-07-24 20:12:09] drwxrwx--x. 2 boinc boinc      4096 Jul 24 20:07 shared
[2025-07-24 20:12:09] -rw-r--r--. 2 boinc boinc    542886 Jul 24 20:07 input.tar.gz
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc         0 Jul 24 20:07 boinc_lockfile
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc      2562 Jul 24 20:07 pandaJob.out
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc    979709 Jul 24 20:08 agis_schedconf.cvmfs.json
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc   1593052 Jul 24 20:08 agis_ddmendpoints.agis.ALL.json
[2025-07-24 20:12:09] drwx------. 4 boinc boinc      4096 Jul 24 20:08 pilot3
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc       989 Jul 24 20:09 memory_monitor_summary.json
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc     21388 Jul 24 20:09 log.45743349._012996.job.log.tgz.1
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc        95 Jul 24 20:11 pilot_heartbeat.json
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc      8429 Jul 24 20:11 heartbeat.json
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc       524 Jul 24 20:12 boinc_task_state.xml
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc       822 Jul 24 20:12 pilotlog.txt
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc        22 Jul 24 20:12 wrapper_checkpoint.txt
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc      8192 Jul 24 20:12 boinc_mmap_file
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc     78038 Jul 24 20:12 log.45743349._012996.job.log.1
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc       188 Jul 24 20:12 output.list
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc       620 Jul 24 20:12 runtime_log
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc    122880 Jul 24 20:12 result.tar.gz
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc      8485 Jul 24 20:12 runtime_log.err
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc       644 Jul 24 20:12 bIcLDm50Kz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAFOLDm7XJ1pm.diag
[2025-07-24 20:12:09] -rw-r--r--. 1 boinc boinc     21793 Jul 24 20:12 stderr.txt
[2025-07-24 20:12:09] No HITS result produced
[2025-07-24 20:12:09]  *** Contents of shared directory: ***
[2025-07-24 20:12:09] total 144100
[2025-07-24 20:12:09] -rw-r--r--. 2 boinc boinc 146867512 Jul 24 20:07 ATLAS.root_0
[2025-07-24 20:12:09] -rw-r--r--. 2 boinc boinc     15095 Jul 24 20:07 start_atlas.sh
[2025-07-24 20:12:09] -rw-r--r--. 2 boinc boinc    542886 Jul 24 20:07 input.tar.gz
[2025-07-24 20:12:09] -rw-------. 1 boinc boinc    122880 Jul 24 20:12 result.tar.gz
20:12:11 (362287): run_atlas exited; CPU time 24.453501
20:12:11 (362287): called boinc_finish(0)

</stderr_txt>
]]>

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