Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 09:03:57 (772): Detected: vboxwrapper 26206
2025-07-25 09:03:57 (772): Detected: BOINC client v8.0.2
2025-07-25 09:03:58 (772): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-25 09:03:58 (772): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 09:03:59 (772): Create VM. (boinc_55473c7b677a2c30, slot#1)
2025-07-25 09:03:59 (772): Setting Memory Size for VM. (4800MB)
2025-07-25 09:04:00 (772): Setting CPU Count for VM. (8)
2025-07-25 09:04:00 (772): Setting Chipset Options for VM.
2025-07-25 09:04:00 (772): Setting Graphics Controller Options for VM.
2025-07-25 09:04:00 (772): Setting Boot Options for VM.
2025-07-25 09:04:01 (772): Setting Network Configuration for NAT.
2025-07-25 09:04:01 (772): Enabling VM Network Access.
2025-07-25 09:04:01 (772): Disabling USB Support for VM.
2025-07-25 09:04:01 (772): Disabling COM Port Support for VM.
2025-07-25 09:04:02 (772): Disabling LPT Port Support for VM.
2025-07-25 09:04:02 (772): Disabling Audio Support for VM.
2025-07-25 09:04:02 (772): Disabling Clipboard Support for VM.
2025-07-25 09:04:02 (772): Disabling Drag and Drop Support for VM.
2025-07-25 09:04:03 (772): Adding storage controller(s) to VM.
2025-07-25 09:04:03 (772): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 09:04:06 (772): Adding VirtualBox Guest Additions to VM.
2025-07-25 09:04:06 (772): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 09:04:06 (772): forwarding host port 62698 to guest port 80
2025-07-25 09:04:07 (772): Enabling remote desktop for VM.
2025-07-25 09:04:07 (772): Required extension pack not installed, remote desktop not enabled.
2025-07-25 09:04:07 (772): Enabling shared directory for VM.
2025-07-25 09:04:07 (772): Starting VM using VBoxManage interface. (boinc_55473c7b677a2c30, slot#1)
2025-07-25 09:04:13 (772): Successfully started VM. (PID = '5544')
2025-07-25 09:04:13 (772): Reporting VM Process ID to BOINC.
2025-07-25 09:04:13 (772): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-25 09:04:13 (772): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 09:04:13 (772): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 09:04:13 (772): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 09:04:13 (772): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 09:04:13 (772): Detected: Web Application Enabled (http://localhost:62698)
2025-07-25 09:04:13 (772): Preference change detected
2025-07-25 09:04:13 (772): Setting CPU throttle for VM. (100%)
2025-07-25 09:04:14 (772): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 09:04:15 (772): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 09:04:15 (772): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 09:04:17 (772): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 09:04:17 (772): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 09:04:17 (772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 09:04:22 (772): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 09:04:22 (772): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 09:04:26 (772): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 09:04:26 (772): Guest Log: 00:00:00.000118 main     Log opened 2025-07-25T09:04:24.463445000Z
2025-07-25 09:04:26 (772): Guest Log: 00:00:00.000189 main     OS Product: Linux
2025-07-25 09:04:26 (772): Guest Log: 00:00:00.000407 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 09:04:26 (772): Guest Log: 00:00:00.000440 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 09:04:26 (772): Guest Log: 00:00:00.000469 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 09:04:26 (772): Guest Log: 00:00:00.000470 main     Process ID: 1364
2025-07-25 09:04:26 (772): Guest Log: 00:00:00.000470 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 09:04:26 (772): Guest Log: 00:00:00.001078 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 09:04:26 (772): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 09:04:26 (772): Guest Log: [INFO] Mounting shared directory
2025-07-25 09:04:26 (772): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 09:04:36 (772): Guest Log: 00:00:10.009891 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 845 389 000ns (GuestNow=1 753 430 676 619 899 000 ns GuestLast=1 753 434 264 465 288 000 ns fSetTimeLastLoop=true )
2025-07-25 09:05:13 (772): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 09:05:13 (772): Guest Log: [INFO] Detected branch: prod
2025-07-25 09:05:17 (772): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 09:05:17 (772): Guest Log: Copying input files
2025-07-25 09:05:17 (772): Guest Log: Copied input files into RunAtlas.
2025-07-25 09:05:17 (772): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 09:05:17 (772): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 09:05:17 (772): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 09:05:17 (772): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 09:06:21 (772): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 09:06:25 (772): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 09:06:25 (772): Guest Log: 2.6.3.0 1666 1 30144 148731 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 09:06:25 (772): Guest Log: copied the webapp to /var/www
2025-07-25 09:06:25 (772): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-25 09:06:25 (772): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-25 09:06:29 (772): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 09:06:29 (772): Guest Log:  *** Starting ATLAS job. (PandaID=6744933785 taskID=45743349) ***
2025-07-25 09:09:26 (772): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 09:15:22 (772): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 09:25:50 (772): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 10:18:40 (772): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 10:18:45 (772): Guest Log: 00:15:31.536381 timesync vgsvcTimeSyncWorker: Radical host time change: 3 180 235 000 000ns (HostNow=1 753 435 124 600 000 000 ns HostLast=1 753 431 944 365 000 000 ns)
2025-07-25 10:18:55 (772): Guest Log: 00:15:41.548210 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 536 465 564 000ns (GuestNow=1 753 435 134 611 903 000 ns GuestLast=1 753 431 598 146 339 000 ns fSetTimeLastLoop=true )
2025-07-25 11:38:19 (772): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 12:20:45 (772): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 12:20:53 (772): Guest Log: 01:35:13.503980 timesync vgsvcTimeSyncWorker: Radical host time change: 2 555 937 000 000ns (HostNow=1 753 442 452 464 000 000 ns HostLast=1 753 439 896 527 000 000 ns)
2025-07-25 12:21:03 (772): Guest Log: 01:35:23.504368 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 555 897 479 000ns (GuestNow=1 753 442 462 464 604 000 ns GuestLast=1 753 439 906 567 125 000 ns fSetTimeLastLoop=true )
2025-07-25 12:25:36 (772): Status Report: Elapsed Time: '6000.000000'
2025-07-25 12:25:36 (772): Status Report: CPU Time: '21944.265625'
2025-07-25 13:00:13 (772): Guest Log:  *** Job finished ***
2025-07-25 13:00:13 (772): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 11:59:57,609 | INFO     | end of generic workflow (traces error code: 0)
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 11:59:57,609 | INFO     | traces error code: 0
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 11:59:57,609 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,848 | INFO     | PID=6134 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,848 | INFO     | found 0 job(s) in 20 queues
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,848 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,848 | CRITICAL | thread 'MainThread' is not alive
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,848 | INFO     | [monitor] control thread has ended
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,912 [wrapper] ==== pilot stdout END ====
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,916 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,920 [wrapper] pilotpid: 6134
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:10,924 [wrapper] Pilot exit status: 0
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:11,696 [wrapper] pandaids: 6744933785
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:11,722 [wrapper] cleanup supervisor_pilot  7777 6135
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:11,730 [wrapper] Test setup, not cleaning
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:11,734 [wrapper] apfmon messages muted
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:11,737 [wrapper] ==== wrapper stdout END ====
2025-07-25 13:00:13 (772): Guest Log: 2025-07-25 12:00:11,742 [wrapper] ==== wrapper stderr END ====
2025-07-25 13:00:13 (772): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 13:00:13 (772): Guest Log:     "exeErrorCode": 0,
2025-07-25 13:00:13 (772): Guest Log:     "exeErrorDiag": "",
2025-07-25 13:00:13 (772): Guest Log:     "pilotErrorCode": 0,
2025-07-25 13:00:13 (772): Guest Log:     "pilotErrorDiag": "",
2025-07-25 13:00:13 (772): Guest Log:  *** Listing of results directory ***
2025-07-25 13:00:13 (772): Guest Log: total 211476
2025-07-25 13:00:13 (772): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 24 21:24 pilot3.tar.gz
2025-07-25 13:00:13 (772): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 24 21:28 queuedata.json
2025-07-25 13:00:13 (772): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 24 21:29 runpilot2-wrapper.sh
2025-07-25 13:00:13 (772): Guest Log: -rwxr-xr-x. 1 atlas atlas      9131 Jul 25 08:05 init_data.xml
2025-07-25 13:00:13 (772): Guest Log: -rwxr-xr-x. 1 atlas atlas    542887 Jul 25 08:05 input.tar.gz
2025-07-25 13:00:13 (772): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 25 08:05 start_atlas.sh
2025-07-25 13:00:13 (772): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 25 08:05 EVNT.45743347._000574.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 13:00:13 (772): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 25 08:06 pandaJob.out
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas    979709 Jul 25 08:17 agis_schedconf.cvmfs.json
2025-07-25 13:00:13 (772): Guest Log: drwx------. 4 atlas atlas      4096 Jul 25 08:18 pilot3
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas 210919293 Jul 25 11:59 HITS.45743349._010396.pool.root.1
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas        97 Jul 25 11:59 pilot_heartbeat.json
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas      1032 Jul 25 11:59 memory_monitor_summary.json
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 25 11:59 agis_ddmendpoints.agis.ALL.json
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas    310806 Jul 25 11:59 log.45743349._010396.job.log.tgz.1
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas      7832 Jul 25 11:59 heartbeat.json
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas       814 Jul 25 12:00 pilotlog.txt
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas    605806 Jul 25 12:00 log.45743349._010396.job.log.1
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas       357 Jul 25 12:00 output.list
2025-07-25 13:00:13 (772): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 25 12:00 runtime_log
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas    931840 Jul 25 12:00 result.tar.gz
2025-07-25 13:00:13 (772): Guest Log: -rw-r--r--. 1 atlas atlas      8585 Jul 25 12:00 runtime_log.err
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas       653 Jul 25 12:00 nShNDmtgIz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOqNLDm2h1Y9n.diag
2025-07-25 13:00:13 (772): Guest Log: Looking for outputfile HITS.45743349._010396.pool.root.1
2025-07-25 13:00:13 (772): Guest Log: HITS file was successfully produced
2025-07-25 13:00:13 (772): Guest Log: -rw-------. 1 atlas atlas 210919293 Jul 25 11:59 /home/atlas/RunAtlas/HITS.45743349._010396.pool.root.1
2025-07-25 13:00:13 (772): Guest Log: Successfully finished the ATLAS job!
2025-07-25 13:00:13 (772): Guest Log: Copying the results back to the shared directory!
2025-07-25 13:00:13 (772): Guest Log:  *** Contents of shared directory: ***
2025-07-25 13:00:13 (772): Guest Log: total 350244
2025-07-25 13:00:13 (772): Guest Log: -rwxrwxrwx. 1 root root 146219940 Jul 25 08:03 ATLAS.root_0
2025-07-25 13:00:13 (772): Guest Log: -rwxrwxrwx. 1 root root 210919293 Jul 25 12:00 HITS.pool.root.1
2025-07-25 13:00:13 (772): Guest Log: -rwxrwxrwx. 1 root root      9131 Jul 25 08:03 init_data.xml
2025-07-25 13:00:13 (772): Guest Log: -rwxrwxrwx. 1 root root    542887 Jul 25 02:09 input.tar.gz
2025-07-25 13:00:13 (772): Guest Log: -rwxrwxrwx. 1 root root    931840 Jul 25 12:00 result.tar.gz
2025-07-25 13:00:13 (772): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 02:09 start_atlas.sh
2025-07-25 13:00:13 (772): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 13:00:13 (772): VM Completion File Detected.
2025-07-25 13:00:13 (772): Powering off VM.
2025-07-25 13:00:14 (772): Successfully stopped VM.
2025-07-25 13:00:14 (772): Deregistering VM. (boinc_55473c7b677a2c30, slot#1)
2025-07-25 13:00:14 (772): Removing network bandwidth throttle group from VM.
2025-07-25 13:00:14 (772): Removing VM from VirtualBox.
13:00:20 (772): called boinc_finish(0)

</stderr_txt>
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