Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:20:59 (1911617): wrapper (7.7.26015): starting
23:20:59 (1911617): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 23:20:59] Arguments: --nthreads 8
[2025-07-24 23:20:59] Threads: 8
[2025-07-24 23:20:59] Checking for CVMFS
[2025-07-24 23:20:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 23:21:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 23:21:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 23:21:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 23:21:00] 2.12.6.0 1904412 14953 366396 148725 0 437 20976055 32503808 21082 16776704 0 88001419 99.507 130353008 18507 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.230.184:3128 1
[2025-07-24 23:21:00] CVMFS is ok
[2025-07-24 23:21:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 23:21:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 23:21:00] Further information can be found at the LHC@home message board.
[2025-07-24 23:21:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 23:21:00] Checking for apptainer binary...
[2025-07-24 23:21:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 23:21:00] Running /usr/bin/apptainer --version
[2025-07-24 23:21:00] apptainer version 1.4.1-1.el9
[2025-07-24 23:21:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 23:21:00] c7-7-36.aglt2.org
[2025-07-24 23:21:00] apptainer works
[2025-07-24 23:21:00] Set ATHENA_PROC_NUMBER=8
[2025-07-24 23:21:00] Set ATHENA_CORE_NUMBER=8
[2025-07-24 23:21:00] Starting ATLAS job with PandaID=6744931846
[2025-07-24 23:21:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:30:59 (2448643): wrapper (7.7.26015): starting
00:30:59 (2448643): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 00:30:59] Arguments: --nthreads 8
[2025-07-25 00:30:59] Threads: 8
[2025-07-25 00:30:59] This job has been restarted, cleaning up previous attempt
[2025-07-25 00:30:59] Checking for CVMFS
[2025-07-25 00:30:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 00:30:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 00:30:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 00:31:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 00:31:00] 2.12.6.0 1904412 15023 363716 148727 3 327 21835131 32503808 21208 16776704 0 88278376 99.507 130664124 18516 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 00:31:00] CVMFS is ok
[2025-07-25 00:31:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 00:31:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 00:31:00] Further information can be found at the LHC@home message board.
[2025-07-25 00:31:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 00:31:00] Checking for apptainer binary...
[2025-07-25 00:31:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 00:31:00] Running /usr/bin/apptainer --version
[2025-07-25 00:31:00] apptainer version 1.4.1-1.el9
[2025-07-25 00:31:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 00:31:00] c7-7-36.aglt2.org
[2025-07-25 00:31:00] apptainer works
[2025-07-25 00:31:00] Set ATHENA_PROC_NUMBER=8
[2025-07-25 00:31:00] Set ATHENA_CORE_NUMBER=8
[2025-07-25 00:31:00] Starting ATLAS job with PandaID=6744931846
[2025-07-25 00:31:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 03:51:17]  *** The last 200 lines of the pilot log: ***
[2025-07-25 03:51:17] 2025-07-25 07:50:37,227 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 03:51:17] 2025-07-25 07:50:37,228 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 03:51:17] 2025-07-25 07:50:37,228 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 03:51:17] 2025-07-25 07:50:37,254 | INFO     | fitting pss+swap vs Time
[2025-07-25 03:51:17] 2025-07-25 07:50:37,278 | INFO     | sum of square deviations: 2334691436.750003
[2025-07-25 03:51:17] 2025-07-25 07:50:37,280 | INFO     | sum of deviations: 10108721691.999992
[2025-07-25 03:51:17] 2025-07-25 07:50:37,280 | INFO     | mean x: 1753423862.5357144
[2025-07-25 03:51:17] 2025-07-25 07:50:37,280 | INFO     | mean y: 2119960.0
[2025-07-25 03:51:17] 2025-07-25 07:50:37,280 | INFO     | -- intersect: -7589835685.821455
[2025-07-25 03:51:17] 2025-07-25 07:50:37,284 | INFO     | intersect: -7589835685.821455
[2025-07-25 03:51:17] 2025-07-25 07:50:37,285 | INFO     | chi2: 3.427006400668579
[2025-07-25 03:51:17] 2025-07-25 07:50:37,285 | INFO     | sum of square deviations: 2160532166.743463
[2025-07-25 03:51:17] 2025-07-25 07:50:37,286 | INFO     | sum of deviations: 34115085004.97384
[2025-07-25 03:51:17] 2025-07-25 07:50:37,286 | INFO     | mean x: 1753423710.0366492
[2025-07-25 03:51:17] 2025-07-25 07:50:37,286 | INFO     | mean y: 2140695.1465968587
[2025-07-25 03:51:17] 2025-07-25 07:50:37,286 | INFO     | -- intersect: -27684648623.894157
[2025-07-25 03:51:17] 2025-07-25 07:50:37,287 | INFO     | intersect: -27684648623.894157
[2025-07-25 03:51:17] 2025-07-25 07:50:37,287 | INFO     | chi2: 1.8266073624640107
[2025-07-25 03:51:17] 2025-07-25 07:50:37,287 | INFO     | current chi2=1.8266073624640107 (change=46.69962209269129 %)
[2025-07-25 03:51:17] 2025-07-25 07:50:37,287 | INFO     | sum of square deviations: 1995256784.236562
[2025-07-25 03:51:17] 2025-07-25 07:50:37,312 | INFO     | sum of deviations: 33587726182.279575
[2025-07-25 03:51:17] 2025-07-25 07:50:37,313 | INFO     | mean x: 1753423557.5376344
[2025-07-25 03:51:17] 2025-07-25 07:50:37,313 | INFO     | mean y: 2140199.3172043012
[2025-07-25 03:51:17] 2025-07-25 07:50:37,313 | INFO     | -- intersect: -29514617141.100418
[2025-07-25 03:51:17] 2025-07-25 07:50:37,313 | INFO     | intersect: -29514617141.100418
[2025-07-25 03:51:17] 2025-07-25 07:50:37,313 | INFO     | chi2: 1.825324434074038
[2025-07-25 03:51:17] 2025-07-25 07:50:37,313 | INFO     | current chi2=1.825324434074038 (change=0.07023558627520637 %)
[2025-07-25 03:51:17] 2025-07-25 07:50:37,313 | INFO     | right removable region: 185
[2025-07-25 03:51:17] 2025-07-25 07:50:37,314 | INFO     | sum of square deviations: 2160527896.743463
[2025-07-25 03:51:17] 2025-07-25 07:50:37,315 | INFO     | sum of deviations: -20652344526.874348
[2025-07-25 03:51:17] 2025-07-25 07:50:37,315 | INFO     | mean x: 1753424015.0366492
[2025-07-25 03:51:17] 2025-07-25 07:50:37,315 | INFO     | mean y: 2146678.6963350787
[2025-07-25 03:51:17] 2025-07-25 07:50:37,315 | INFO     | -- intersect: 16763011888.913969
[2025-07-25 03:51:17] 2025-07-25 07:50:37,315 | INFO     | intersect: 16763011888.913969
[2025-07-25 03:51:17] 2025-07-25 07:50:37,316 | INFO     | chi2: 1.8095323050062793
[2025-07-25 03:51:17] 2025-07-25 07:50:37,316 | INFO     | current chi2=1.8095323050062793 (change=47.197872036268876 %)
[2025-07-25 03:51:17] 2025-07-25 07:50:37,316 | INFO     | sum of square deviations: 1995248244.236562
[2025-07-25 03:51:17] 2025-07-25 07:50:37,327 | INFO     | sum of deviations: -26147746616.11827
[2025-07-25 03:51:17] 2025-07-25 07:50:37,328 | INFO     | mean x: 1753424167.5376344
[2025-07-25 03:51:17] 2025-07-25 07:50:37,328 | INFO     | mean y: 2151666.2311827955
[2025-07-25 03:51:17] 2025-07-25 07:50:37,328 | INFO     | -- intersect: 22980791530.11185
[2025-07-25 03:51:17] 2025-07-25 07:50:37,328 | INFO     | intersect: 22980791530.11185
[2025-07-25 03:51:17] 2025-07-25 07:50:37,328 | INFO     | chi2: 1.7079311195382871
[2025-07-25 03:51:17] 2025-07-25 07:50:37,328 | INFO     | current chi2=1.7079311195382871 (change=5.6147759941561 %)
[2025-07-25 03:51:17] 2025-07-25 07:50:37,328 | INFO     | left removable region: 20
[2025-07-25 03:51:17] 2025-07-25 07:50:37,329 | INFO     | sum of square deviations: 1392846678.7030315
[2025-07-25 03:51:17] 2025-07-25 07:50:37,330 | INFO     | sum of deviations: -399372308.4060609
[2025-07-25 03:51:17] 2025-07-25 07:50:37,330 | INFO     | mean x: 1753424137.0424242
[2025-07-25 03:51:17] 2025-07-25 07:50:37,330 | INFO     | mean y: 2173265.915151515
[2025-07-25 03:51:17] 2025-07-25 07:50:37,330 | INFO     | -- intersect: 504934306.2599535
[2025-07-25 03:51:17] 2025-07-25 07:50:37,330 | INFO     | intersect: 504934306.2599535
[2025-07-25 03:51:17] 2025-07-25 07:50:37,330 | INFO     | chi2: 0.06196010232760818
[2025-07-25 03:51:17] 2025-07-25 07:50:37,330 | INFO     | -- intersect: 504934306.2599535
[2025-07-25 03:51:17] 2025-07-25 07:50:37,330 | INFO     | current memory leak: -0.29 B/s (using 165 data points, chi2=0.06)
[2025-07-25 03:51:17] 2025-07-25 07:50:37,331 | INFO     | could have reported an average CPU frequency of 2949 MHz (10 samples)
[2025-07-25 03:51:17] 2025-07-25 07:50:37,339 | INFO     | ..............................
[2025-07-25 03:51:17] 2025-07-25 07:50:37,339 | INFO     | . Timing measurements:
[2025-07-25 03:51:17] 2025-07-25 07:50:37,339 | INFO     | . get job = 0 s
[2025-07-25 03:51:17] 2025-07-25 07:50:37,339 | INFO     | . initial setup = 1 s
[2025-07-25 03:51:17] 2025-07-25 07:50:37,339 | INFO     | . payload setup = 11 s
[2025-07-25 03:51:17] 2025-07-25 07:50:37,339 | INFO     | . stage-in = 0 s
[2025-07-25 03:51:17] 2025-07-25 07:50:37,339 | INFO     | . payload execution = 11908 s
[2025-07-25 03:51:17] 2025-07-25 07:50:37,340 | INFO     | . stage-out = 3 s
[2025-07-25 03:51:17] 2025-07-25 07:50:37,340 | INFO     | . log creation = 0 s
[2025-07-25 03:51:17] 2025-07-25 07:50:37,340 | INFO     | ..............................
[2025-07-25 03:51:17] 2025-07-25 07:50:37,501 | INFO     | 
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | job summary report
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | --------------------------------------------------
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | PanDA job id: 6744931846
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | task id: 45743349
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | errors: (none)
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | pilot state: finished 
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | transexitcode: 0
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | exeerrorcode: 0
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | exeerrordiag: 
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | exitcode: 0
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | exitmsg: OK
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | cpuconsumptiontime: 41528 s
[2025-07-25 03:51:17] 2025-07-25 07:50:37,503 | INFO     | nevents: 400
[2025-07-25 03:51:17] 2025-07-25 07:50:37,504 | INFO     | neventsw: 0
[2025-07-25 03:51:17] 2025-07-25 07:50:37,504 | INFO     | pid: 2479381
[2025-07-25 03:51:17] 2025-07-25 07:50:37,504 | INFO     | pgrp: 2479381
[2025-07-25 03:51:17] 2025-07-25 07:50:37,504 | INFO     | corecount: 8
[2025-07-25 03:51:17] 2025-07-25 07:50:37,504 | INFO     | event service: False
[2025-07-25 03:51:17] 2025-07-25 07:50:37,504 | INFO     | sizes: {0: 2397473, 7: 2397735, 11: 2397763, 11925: 2427618, 11930: 2436616, 11933: 2436672, 11944: 2436994}
[2025-07-25 03:51:17] 2025-07-25 07:50:37,504 | INFO     | --------------------------------------------------
[2025-07-25 03:51:17] 2025-07-25 07:50:37,504 | INFO     | 
[2025-07-25 03:51:17] 2025-07-25 07:50:37,504 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 03:51:17] 2025-07-25 07:50:37,585 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,585 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,585 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,587 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,587 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,587 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 03:51:17] 2025-07-25 07:50:37,587 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,587 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 03:51:17] 2025-07-25 07:50:37,587 | INFO     | job 6744931846 has completed (purged errors)
[2025-07-25 03:51:17] 2025-07-25 07:50:37,587 | INFO     | overall cleanup function is called
[2025-07-25 03:51:17] 2025-07-25 07:50:38,596 | INFO     | --- collectZombieJob: --- 10, [2479381]
[2025-07-25 03:51:17] 2025-07-25 07:50:38,597 | INFO     | zombie collector waiting for pid 2479381
[2025-07-25 03:51:17] 2025-07-25 07:50:38,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 03:51:17] 2025-07-25 07:50:38,597 | INFO     | collected zombie processes
[2025-07-25 03:51:17] 2025-07-25 07:50:38,597 | INFO     | will attempt to kill all subprocesses of pid=2479381
[2025-07-25 03:51:17] 2025-07-25 07:50:39,765 | INFO     | process IDs to be killed: [2479381] (in reverse order)
[2025-07-25 03:51:17] 2025-07-25 07:50:40,062 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 03:51:17] 2025-07-25 07:50:40,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 03:51:17] 2025-07-25 07:50:40,135 | INFO     | did not find any defunct processes belonging to 2479381
[2025-07-25 03:51:17] 2025-07-25 07:50:40,160 | INFO     | did not find any defunct processes belonging to 2479381
[2025-07-25 03:51:17] 2025-07-25 07:50:40,161 | INFO     | ready for new job
[2025-07-25 03:51:17] 2025-07-25 07:50:40,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 03:51:17] 2025-07-25 07:50:40,163 | INFO     | ***************************************
[2025-07-25 03:51:17] 2025-07-25 07:50:40,164 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 03:51:17] 2025-07-25 07:50:40,164 | INFO     | ***************************************
[2025-07-25 03:51:17] 2025-07-25 07:50:40,164 | INFO     | 
[2025-07-25 03:51:17] 2025-07-25 07:50:40,184 | INFO     | architecture information:
[2025-07-25 03:51:17] 2025-07-25 07:50:40,185 | INFO     | executing command: cat /etc/os-release
[2025-07-25 03:51:17] 2025-07-25 07:50:40,211 | INFO     | cat /etc/os-release:
[2025-07-25 03:51:17] NAME="CentOS Linux"
[2025-07-25 03:51:17] VERSION="7 (Core)"
[2025-07-25 03:51:17] ID="centos"
[2025-07-25 03:51:17] ID_LIKE="rhel fedora"
[2025-07-25 03:51:17] VERSION_ID="7"
[2025-07-25 03:51:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 03:51:17] ANSI_COLOR="0;31"
[2025-07-25 03:51:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 03:51:17] HOME_URL="https://www.centos.org/"
[2025-07-25 03:51:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 03:51:17] 
[2025-07-25 03:51:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 03:51:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 03:51:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 03:51:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 03:51:17] 
[2025-07-25 03:51:17] 2025-07-25 07:50:40,212 | INFO     | ***************************************
[2025-07-25 03:51:17] 2025-07-25 07:50:40,715 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 03:51:17] 2025-07-25 07:50:40,893 | INFO     | sufficient remaining disk space (95944704000 B)
[2025-07-25 03:51:17] 2025-07-25 07:50:40,893 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 03:51:17] 2025-07-25 07:50:40,894 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 03:51:17] 2025-07-25 07:50:40,895 | INFO     | update_server=False
[2025-07-25 03:51:17] 2025-07-25 07:50:40,895 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 03:51:17] 2025-07-25 07:50:40,895 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 03:51:17] 2025-07-25 07:50:40,895 | INFO     | aborting loop
[2025-07-25 03:51:17] 2025-07-25 07:50:40,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 03:51:17] 2025-07-25 07:50:40,947 | INFO     | all payload control threads have been joined
[2025-07-25 03:51:17] 2025-07-25 07:50:41,050 | INFO     | all job control threads have been joined
[2025-07-25 03:51:17] 2025-07-25 07:50:41,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 03:51:17] 2025-07-25 07:50:41,900 | INFO     | [job] retrieve thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:41,907 | INFO     | [job] job monitor thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:41,952 | INFO     | [payload] control thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:42,023 | INFO     | all data control threads have been joined
[2025-07-25 03:51:17] 2025-07-25 07:50:42,054 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:42,059 | INFO     | [job] control thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:42,327 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:42,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 03:51:17] 2025-07-25 07:50:42,606 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:42,757 | INFO     | [job] validate thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:42,810 | INFO     | [payload] failed_post thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:42,852 | INFO     | [data] copytool_in thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:43,029 | INFO     | [data] control thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:43,115 | INFO     | [data] copytool_out thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:43,159 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:43,508 | INFO     | [payload] validate_post thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:43,520 | INFO     | [job] queue monitor thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:44,941 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 03:51:17] 2025-07-25 07:50:46,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011049797440)>', '<ExcThread(monitor, started 140010781120256)>']
[2025-07-25 03:51:17] 2025-07-25 07:50:51,216 | INFO     | all workflow threads have been joined
[2025-07-25 03:51:17] 2025-07-25 07:50:51,217 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 03:51:17] 2025-07-25 07:50:51,217 | INFO     | traces error code: 0
[2025-07-25 03:51:17] 2025-07-25 07:50:51,217 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 03:51:17] 2025-07-25 07:51:15,656 | INFO     | PID=2459477 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 03:51:17] 2025-07-25 07:51:15,657 | INFO     | .. there are 28 such processes running
[2025-07-25 03:51:17] 2025-07-25 07:51:15,657 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 03:51:17] 2025-07-25 07:51:15,657 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 03:51:17] 2025-07-25 07:51:15,658 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 03:51:17] 2025-07-25 07:51:15,658 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 03:51:17] 2025-07-25 07:51:15,658 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 03:51:17] 2025-07-25 07:51:15,658 | INFO     | [monitor] control thread has ended
[2025-07-25 03:51:17] 2025-07-25 07:51:16,521 [wrapper] ==== pilot stdout END ====
[2025-07-25 03:51:17] 2025-07-25 07:51:16,591 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 03:51:17] 2025-07-25 07:51:16,634 [wrapper] pilotpid: 2459477
[2025-07-25 03:51:17] 2025-07-25 07:51:16,675 [wrapper] Pilot exit status: 0
[2025-07-25 03:51:17] 2025-07-25 07:51:16,826 [wrapper] pandaids: 6744931846 6744931846
[2025-07-25 03:51:17] 2025-07-25 07:51:17,258 [wrapper] cleanup supervisor_pilot 3400794 2459478
[2025-07-25 03:51:17] 2025-07-25 07:51:17,286 [wrapper] Test setup, not cleaning
[2025-07-25 03:51:17] 2025-07-25 07:51:17,290 [wrapper] apfmon messages muted
[2025-07-25 03:51:17] 2025-07-25 07:51:17,293 [wrapper] ==== wrapper stdout END ====
[2025-07-25 03:51:17] 2025-07-25 07:51:17,296 [wrapper] ==== wrapper stderr END ====
[2025-07-25 03:51:17]  *** Error codes and diagnostics ***
[2025-07-25 03:51:17]     "exeErrorCode": 0,
[2025-07-25 03:51:17]     "exeErrorDiag": "",
[2025-07-25 03:51:17]     "pilotErrorCode": 0,
[2025-07-25 03:51:17]     "pilotErrorDiag": "",
[2025-07-25 03:51:17]  *** Listing of results directory ***
[2025-07-25 03:51:17] total 500700
[2025-07-25 03:51:17] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 17:07 pilot3.tar.gz
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 17:10 queuedata.json
[2025-07-25 03:51:17] -rwx------. 1 boincer umatlas     36292 Jul 24 17:11 runpilot2-wrapper.sh
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas       100 Jul 24 23:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 03:51:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 23:20 run_atlas
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas       105 Jul 24 23:20 job.xml
[2025-07-25 03:51:17] -rw-r--r--. 3 boincer umatlas 144704421 Jul 24 23:20 EVNT.45743347._000551.pool.root.1
[2025-07-25 03:51:17] -rw-r--r--. 3 boincer umatlas 144704421 Jul 24 23:20 ATLAS.root_0
[2025-07-25 03:51:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 23:20 start_atlas.sh
[2025-07-25 03:51:17] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 23:20 shared
[2025-07-25 03:51:17] -rw-r--r--. 2 boincer umatlas    542885 Jul 24 23:20 input.tar.gz
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas         0 Jul 24 23:20 boinc_lockfile
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 00:31 pandaJob.out
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas    979701 Jul 25 00:31 agis_schedconf.cvmfs.json
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas      6935 Jul 25 03:47 init_data.xml
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas 216653892 Jul 25 03:49 HITS.45743349._010052.pool.root.1
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas       530 Jul 25 03:49 boinc_task_state.xml
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas      1048 Jul 25 03:50 memory_monitor_summary.json
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas        96 Jul 25 03:50 pilot_heartbeat.json
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas   1593052 Jul 25 03:50 agis_ddmendpoints.agis.ALL.json
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas    369436 Jul 25 03:50 log.45743349._010052.job.log.tgz.1
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas      7799 Jul 25 03:50 heartbeat.json
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 03:51 boinc_mmap_file
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas        28 Jul 25 03:51 wrapper_checkpoint.txt
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas       893 Jul 25 03:51 pilotlog.txt
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas   1016027 Jul 25 03:51 log.45743349._010052.job.log.1
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas       357 Jul 25 03:51 output.list
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas       620 Jul 25 03:51 runtime_log
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas   1402880 Jul 25 03:51 result.tar.gz
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas      8741 Jul 25 03:51 runtime_log.err
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas       784 Jul 25 03:51 kgRMDmmOIz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGmNLDmthFyYm.diag
[2025-07-25 03:51:17] -rw-r--r--. 1 boincer umatlas     23132 Jul 25 03:51 stderr.txt
[2025-07-25 03:51:17] HITS file was successfully produced:
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas 216653892 Jul 25 03:49 shared/HITS.pool.root.1
[2025-07-25 03:51:17]  *** Contents of shared directory: ***
[2025-07-25 03:51:17] total 354820
[2025-07-25 03:51:17] -rw-r--r--. 3 boincer umatlas 144704421 Jul 24 23:20 ATLAS.root_0
[2025-07-25 03:51:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 23:20 start_atlas.sh
[2025-07-25 03:51:17] -rw-r--r--. 2 boincer umatlas    542885 Jul 24 23:20 input.tar.gz
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas 216653892 Jul 25 03:49 HITS.pool.root.1
[2025-07-25 03:51:17] -rw-------. 1 boincer umatlas   1402880 Jul 25 03:51 result.tar.gz
03:51:39 (2448643): run_atlas exited; CPU time 42012.312898
03:51:39 (2448643): called boinc_finish(0)

</stderr_txt>
]]>

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