Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:38:05 (47619): wrapper (7.7.26015): starting
20:38:05 (47619): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 20:38:05] Arguments: --nthreads 8
[2025-07-24 20:38:05] Threads: 8
[2025-07-24 20:38:05] Checking for CVMFS
[2025-07-24 20:38:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 20:38:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 20:38:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 20:38:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 20:38:09] 2.12.6.0 3074763 96262 736832 148720 1 130 26636024 32935937 30734 16776704 2 187548695 99.659 219845701 7104 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-24 20:38:09] CVMFS is ok
[2025-07-24 20:38:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 20:38:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 20:38:09] Further information can be found at the LHC@home message board.
[2025-07-24 20:38:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 20:38:09] Checking for apptainer binary...
[2025-07-24 20:38:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 20:38:09] Running /usr/bin/apptainer --version
[2025-07-24 20:38:09] apptainer version 1.4.1-1.el9
[2025-07-24 20:38:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 20:38:10] c6-12-25-1.aglt2.org
[2025-07-24 20:38:10] apptainer works
[2025-07-24 20:38:10] Set ATHENA_PROC_NUMBER=8
[2025-07-24 20:38:10] Set ATHENA_CORE_NUMBER=8
[2025-07-24 20:38:10] Starting ATLAS job with PandaID=6744921573
[2025-07-24 20:38:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:40:07 (47619): BOINC client no longer exists - exiting
20:40:07 (47619): timer handler: client dead, exiting
20:46:33 (91853): wrapper (7.7.26015): starting
20:46:33 (91853): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 20:46:33] Arguments: --nthreads 8
[2025-07-24 20:46:33] Threads: 8
[2025-07-24 20:46:33] This job has been restarted, cleaning up previous attempt
[2025-07-24 20:46:33] Checking for CVMFS
[2025-07-24 20:46:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 20:46:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 20:46:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 20:46:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 20:46:35] 2.12.6.0 3074763 96270 745576 148720 1 469 26636310 32935937 28015 16776704 2 187624256 99.659 219845730 7104 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-24 20:46:35] CVMFS is ok
[2025-07-24 20:46:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 20:46:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 20:46:35] Further information can be found at the LHC@home message board.
[2025-07-24 20:46:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 20:46:35] Checking for apptainer binary...
[2025-07-24 20:46:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 20:46:35] Running /usr/bin/apptainer --version
[2025-07-24 20:46:35] apptainer version 1.4.1-1.el9
[2025-07-24 20:46:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 20:46:36] c6-12-25-1.aglt2.org
[2025-07-24 20:46:36] apptainer works
[2025-07-24 20:46:36] Set ATHENA_PROC_NUMBER=8
[2025-07-24 20:46:36] Set ATHENA_CORE_NUMBER=8
[2025-07-24 20:46:36] Starting ATLAS job with PandaID=6744921573
[2025-07-24 20:46:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 16:02:42]  *** The last 200 lines of the pilot log: ***
[2025-07-25 16:02:42] 2025-07-25 12:52:12,502 | INFO     | mean x: 1753426007.2212765
[2025-07-25 16:02:42] 2025-07-25 12:52:12,502 | INFO     | mean y: 2081569.8553191489
[2025-07-25 16:02:42] 2025-07-25 12:52:12,503 | INFO     | -- intersect: -4318839131.06768
[2025-07-25 16:02:42] 2025-07-25 12:52:12,503 | INFO     | intersect: -4318839131.06768
[2025-07-25 16:02:42] 2025-07-25 12:52:12,517 | INFO     | chi2: 4.8250996988403925
[2025-07-25 16:02:42] 2025-07-25 12:52:12,518 | INFO     | current chi2=4.8250996988403925 (change=41.53044955826296 %)
[2025-07-25 16:02:42] 2025-07-25 12:52:12,570 | INFO     | sum of square deviations: 106360470995.33739
[2025-07-25 16:02:42] 2025-07-25 12:52:12,648 | INFO     | monitor loop #1595: job 0:6744921573 is in state 'finished'
[2025-07-25 16:02:42] 2025-07-25 12:52:12,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 16:02:42] 2025-07-25 12:52:12,741 | INFO     | sum of deviations: 347417045442.0579
[2025-07-25 16:02:42] 2025-07-25 12:52:12,741 | INFO     | mean x: 1753425854.7257142
[2025-07-25 16:02:42] 2025-07-25 12:52:12,742 | INFO     | mean y: 2086841.6357142858
[2025-07-25 16:02:42] 2025-07-25 12:52:12,742 | INFO     | -- intersect: -5725323202.244473
[2025-07-25 16:02:42] 2025-07-25 12:52:12,742 | INFO     | intersect: -5725323202.244473
[2025-07-25 16:02:42] 2025-07-25 12:52:12,749 | INFO     | chi2: 3.3248945384463786
[2025-07-25 16:02:42] 2025-07-25 12:52:12,749 | INFO     | current chi2=3.3248945384463786 (change=31.091692483671483 %)
[2025-07-25 16:02:42] 2025-07-25 12:52:12,756 | INFO     | sum of square deviations: 104097435343.31805
[2025-07-25 16:02:42] 2025-07-25 12:52:13,279 | INFO     | sum of deviations: 349405424554.3096
[2025-07-25 16:02:42] 2025-07-25 12:52:13,280 | INFO     | mean x: 1753425702.2201438
[2025-07-25 16:02:42] 2025-07-25 12:52:13,280 | INFO     | mean y: 2086974.90647482
[2025-07-25 16:02:42] 2025-07-25 12:52:13,280 | INFO     | -- intersect: -5883326531.085281
[2025-07-25 16:02:42] 2025-07-25 12:52:13,280 | INFO     | intersect: -5883326531.085281
[2025-07-25 16:02:42] 2025-07-25 12:52:13,287 | INFO     | chi2: 3.3178135563044737
[2025-07-25 16:02:42] 2025-07-25 12:52:13,287 | INFO     | current chi2=3.3178135563044737 (change=0.212968623817272 %)
[2025-07-25 16:02:42] 2025-07-25 12:52:13,288 | INFO     | right removable region: 694
[2025-07-25 16:02:42] 2025-07-25 12:52:13,290 | INFO     | sum of square deviations: 108655241039.48091
[2025-07-25 16:02:42] 2025-07-25 12:52:13,361 | INFO     | sum of deviations: -61159645099.80876
[2025-07-25 16:02:42] 2025-07-25 12:52:13,361 | INFO     | mean x: 1753426312.2212765
[2025-07-25 16:02:42] 2025-07-25 12:52:13,362 | INFO     | mean y: 2079225.1205673758
[2025-07-25 16:02:42] 2025-07-25 12:52:13,362 | INFO     | -- intersect: 989044326.2807907
[2025-07-25 16:02:42] 2025-07-25 12:52:13,362 | INFO     | intersect: 989044326.2807907
[2025-07-25 16:02:42] 2025-07-25 12:52:13,365 | INFO     | chi2: 5.9080356941503
[2025-07-25 16:02:42] 2025-07-25 12:52:13,365 | INFO     | current chi2=5.9080356941503 (change=28.407657335303792 %)
[2025-07-25 16:02:42] 2025-07-25 12:52:13,367 | INFO     | sum of square deviations: 106359549341.97021
[2025-07-25 16:02:42] 2025-07-25 12:52:13,424 | INFO     | sum of deviations: -131236965934.70996
[2025-07-25 16:02:42] 2025-07-25 12:52:13,424 | INFO     | mean x: 1753426464.73
[2025-07-25 16:02:42] 2025-07-25 12:52:13,425 | INFO     | mean y: 2083877.8957142858
[2025-07-25 16:02:42] 2025-07-25 12:52:13,425 | INFO     | -- intersect: 2165635440.9144683
[2025-07-25 16:02:42] 2025-07-25 12:52:13,430 | INFO     | intersect: 2165635440.9144683
[2025-07-25 16:02:42] 2025-07-25 12:52:13,433 | INFO     | chi2: 5.418250677877951
[2025-07-25 16:02:42] 2025-07-25 12:52:13,434 | INFO     | current chi2=5.418250677877951 (change=8.29014991831038 %)
[2025-07-25 16:02:42] 2025-07-25 12:52:13,434 | INFO     | left removable region: 20
[2025-07-25 16:02:42] 2025-07-25 12:52:13,440 | INFO     | sum of square deviations: 94942898351.12177
[2025-07-25 16:02:42] 2025-07-25 12:52:13,542 | INFO     | sum of deviations: 107249921817.3146
[2025-07-25 16:02:42] 2025-07-25 12:52:13,543 | INFO     | mean x: 1753426281.7477744
[2025-07-25 16:02:42] 2025-07-25 12:52:13,543 | INFO     | mean y: 2103760.543026706
[2025-07-25 16:02:42] 2025-07-25 12:52:13,543 | INFO     | -- intersect: -1978611331.326207
[2025-07-25 16:02:42] 2025-07-25 12:52:13,543 | INFO     | intersect: -1978611331.326207
[2025-07-25 16:02:42] 2025-07-25 12:52:13,550 | INFO     | chi2: 0.33964953214531896
[2025-07-25 16:02:42] 2025-07-25 12:52:13,551 | INFO     | -- intersect: -1978611331.326207
[2025-07-25 16:02:42] 2025-07-25 12:52:13,551 | INFO     | current memory leak: 1.13 B/s (using 674 data points, chi2=0.34)
[2025-07-25 16:02:42] 2025-07-25 12:52:13,557 | INFO     | could have reported an average CPU frequency of 1001 MHz (27 samples)
[2025-07-25 16:02:42] 2025-07-25 12:52:13,558 | INFO     | ..............................
[2025-07-25 16:02:42] 2025-07-25 12:52:13,558 | INFO     | . Timing measurements:
[2025-07-25 16:02:42] 2025-07-25 12:52:13,558 | INFO     | . get job = 0 s
[2025-07-25 16:02:42] 2025-07-25 12:52:13,558 | INFO     | . initial setup = 2 s
[2025-07-25 16:02:42] 2025-07-25 12:52:13,559 | INFO     | . payload setup = 29 s
[2025-07-25 16:02:42] 2025-07-25 12:52:13,559 | INFO     | . stage-in = 0 s
[2025-07-25 16:02:42] 2025-07-25 12:52:13,559 | INFO     | . payload execution = 43328 s
[2025-07-25 16:02:42] 2025-07-25 12:52:13,559 | INFO     | . stage-out = 21 s
[2025-07-25 16:02:42] 2025-07-25 12:52:13,559 | INFO     | . log creation = 1 s
[2025-07-25 16:02:42] 2025-07-25 12:52:13,559 | INFO     | ..............................
[2025-07-25 16:02:42] 2025-07-25 12:52:14,229 | INFO     | PID=108391 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 16:02:42] 2025-07-25 12:52:14,248 | INFO     | .. there are 45 such processes running
[2025-07-25 16:02:42] 2025-07-25 12:52:15,929 | INFO     | 
[2025-07-25 16:02:42] 2025-07-25 12:52:15,930 | INFO     | job summary report
[2025-07-25 16:02:42] 2025-07-25 12:52:15,930 | INFO     | --------------------------------------------------
[2025-07-25 16:02:42] 2025-07-25 12:52:15,931 | INFO     | PanDA job id: 6744921573
[2025-07-25 16:02:42] 2025-07-25 12:52:15,931 | INFO     | task id: 45743349
[2025-07-25 16:02:42] 2025-07-25 12:52:15,931 | INFO     | errors: (none)
[2025-07-25 16:02:42] 2025-07-25 12:52:15,931 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 16:02:42] 2025-07-25 12:52:15,931 | INFO     | pilot state: finished 
[2025-07-25 16:02:42] 2025-07-25 12:52:15,932 | INFO     | transexitcode: 0
[2025-07-25 16:02:42] 2025-07-25 12:52:15,932 | INFO     | exeerrorcode: 0
[2025-07-25 16:02:42] 2025-07-25 12:52:15,932 | INFO     | exeerrordiag: 
[2025-07-25 16:02:42] 2025-07-25 12:52:15,932 | INFO     | exitcode: 0
[2025-07-25 16:02:42] 2025-07-25 12:52:15,932 | INFO     | exitmsg: OK
[2025-07-25 16:02:42] 2025-07-25 12:52:15,933 | INFO     | cpuconsumptiontime: 127593 s
[2025-07-25 16:02:42] 2025-07-25 12:52:15,933 | INFO     | nevents: 400
[2025-07-25 16:02:42] 2025-07-25 12:52:15,940 | INFO     | neventsw: 0
[2025-07-25 16:02:42] 2025-07-25 12:52:15,940 | INFO     | pid: 128766
[2025-07-25 16:02:42] 2025-07-25 12:52:15,940 | INFO     | pgrp: 128766
[2025-07-25 16:02:42] 2025-07-25 12:52:15,959 | INFO     | corecount: 8
[2025-07-25 16:02:42] 2025-07-25 12:52:15,959 | INFO     | event service: False
[2025-07-25 16:02:42] 2025-07-25 12:52:15,959 | INFO     | sizes: {0: 2396641, 1: 2397326, 2: 2397525, 3: 2397525, 14: 2397553, 20: 2397843, 25: 2397999, 43363: 2440067, 43364: 2440066, 43389: 2449120, 43394: 2449176, 4345
[2025-07-25 16:02:42] 2025-07-25 12:52:15,959 | INFO     | --------------------------------------------------
[2025-07-25 16:02:42] 2025-07-25 12:52:15,960 | INFO     | 
[2025-07-25 16:02:42] 2025-07-25 12:52:15,960 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-25 16:02:42] 2025-07-25 12:52:16,079 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,080 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,080 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,080 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,082 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,082 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,082 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,083 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,083 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,083 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,083 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 16:02:42] 2025-07-25 12:52:16,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,084 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 16:02:42] 2025-07-25 12:52:16,084 | INFO     | job 6744921573 has completed (purged errors)
[2025-07-25 16:02:42] 2025-07-25 12:52:16,089 | INFO     | overall cleanup function is called
[2025-07-25 16:02:42] 2025-07-25 12:52:17,105 | INFO     | --- collectZombieJob: --- 10, [128766]
[2025-07-25 16:02:42] 2025-07-25 12:52:17,106 | INFO     | zombie collector waiting for pid 128766
[2025-07-25 16:02:42] 2025-07-25 12:52:17,106 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 16:02:42] 2025-07-25 12:52:17,106 | INFO     | collected zombie processes
[2025-07-25 16:02:42] 2025-07-25 12:52:17,107 | INFO     | will attempt to kill all subprocesses of pid=128766
[2025-07-25 16:02:42] 2025-07-25 12:52:23,703 | INFO     | process IDs to be killed: [128766] (in reverse order)
[2025-07-25 16:02:42] 2025-07-25 12:52:24,379 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 16:02:42] 2025-07-25 12:52:24,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 16:02:42] 2025-07-25 12:52:24,477 | INFO     | did not find any defunct processes belonging to 128766
[2025-07-25 16:02:42] 2025-07-25 12:52:24,600 | INFO     | did not find any defunct processes belonging to 128766
[2025-07-25 16:02:42] 2025-07-25 12:52:24,601 | INFO     | ready for new job
[2025-07-25 16:02:42] 2025-07-25 12:52:24,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 16:02:42] 2025-07-25 12:52:24,612 | INFO     | ***************************************
[2025-07-25 16:02:42] 2025-07-25 12:52:24,621 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 16:02:42] 2025-07-25 12:52:24,621 | INFO     | ***************************************
[2025-07-25 16:02:42] 2025-07-25 12:52:24,621 | INFO     | 
[2025-07-25 16:02:42] 2025-07-25 12:52:24,707 | INFO     | architecture information:
[2025-07-25 16:02:42] 2025-07-25 12:52:24,727 | INFO     | executing command: cat /etc/os-release
[2025-07-25 16:02:42] 2025-07-25 12:52:24,821 | INFO     | cat /etc/os-release:
[2025-07-25 16:02:42] NAME="CentOS Linux"
[2025-07-25 16:02:42] VERSION="7 (Core)"
[2025-07-25 16:02:42] ID="centos"
[2025-07-25 16:02:42] ID_LIKE="rhel fedora"
[2025-07-25 16:02:42] VERSION_ID="7"
[2025-07-25 16:02:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 16:02:42] ANSI_COLOR="0;31"
[2025-07-25 16:02:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 16:02:42] HOME_URL="https://www.centos.org/"
[2025-07-25 16:02:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 16:02:42] 
[2025-07-25 16:02:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 16:02:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 16:02:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 16:02:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 16:02:42] 
[2025-07-25 16:02:42] 2025-07-25 12:52:24,822 | INFO     | ***************************************
[2025-07-25 16:02:42] 2025-07-25 12:52:25,326 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-25 16:02:42] 2025-07-25 12:52:25,489 | INFO     | sufficient remaining disk space (73513566208 B)
[2025-07-25 16:02:42] 2025-07-25 12:52:25,490 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 16:02:42] 2025-07-25 12:52:25,490 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 16:02:42] 2025-07-25 12:52:25,490 | INFO     | update_server=False
[2025-07-25 16:02:42] 2025-07-25 12:52:25,491 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 16:02:42] 2025-07-25 12:52:25,491 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 16:02:42] 2025-07-25 12:52:25,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 16:02:42] 2025-07-25 12:52:25,494 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 16:02:42] 2025-07-25 12:52:25,730 | INFO     | all job control threads have been joined
[2025-07-25 16:02:42] 2025-07-25 12:52:25,805 | INFO     | all payload control threads have been joined
[2025-07-25 16:02:42] 2025-07-25 12:52:25,831 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 16:02:42] 2025-07-25 12:52:25,832 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 16:02:42] 2025-07-25 12:52:25,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 16:02:42] 2025-07-25 12:52:25,833 | INFO     | will abort loop
[2025-07-25 16:02:42] 2025-07-25 12:52:26,359 | INFO     | all data control threads have been joined
[2025-07-25 16:02:42] 2025-07-25 12:52:26,497 | INFO     | [job] retrieve thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:26,498 | INFO     | [job] queue monitor thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:26,738 | INFO     | [job] control thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:26,813 | INFO     | [payload] control thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:26,841 | INFO     | [job] job monitor thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:26,919 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:26,920 | INFO     | [data] copytool_in thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:26,921 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:26,993 | INFO     | [job] validate thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:27,018 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:27,024 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:27,203 | INFO     | [payload] validate_post thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:27,204 | INFO     | [payload] failed_post thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:27,373 | INFO     | [data] control thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:27,514 | INFO     | [data] copytool_out thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:29,505 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 16:02:42] 2025-07-25 12:52:30,585 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140203266074432)>', '<ExcThread(monitor, started 140202546812672)>']
[2025-07-25 16:02:42] 2025-07-25 12:52:35,611 | INFO     | all workflow threads have been joined
[2025-07-25 16:02:42] 2025-07-25 12:52:35,612 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 16:02:42] 2025-07-25 12:52:35,613 | INFO     | traces error code: 0
[2025-07-25 16:02:42] 2025-07-25 12:52:35,633 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 16:02:42] 2025-07-25 12:52:55,724 | INFO     | PID=108391 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 16:02:42] 2025-07-25 12:52:55,725 | INFO     | .. there are 45 such processes running
[2025-07-25 16:02:42] 2025-07-25 12:52:55,790 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 16:02:42] 2025-07-25 12:52:55,791 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 16:02:42] 2025-07-25 12:52:55,791 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 16:02:42] 2025-07-25 12:52:55,791 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 16:02:42] 2025-07-25 12:52:55,791 | INFO     | [monitor] control thread has ended
[2025-07-25 16:02:42] 2025-07-25 12:52:58,945 [wrapper] ==== pilot stdout END ====
[2025-07-25 16:02:42] 2025-07-25 12:52:58,990 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 16:02:42] 2025-07-25 12:52:59,047 [wrapper] pilotpid: 108391
[2025-07-25 16:02:42] 2025-07-25 12:52:59,077 [wrapper] Pilot exit status: 0
[2025-07-25 16:02:42] 2025-07-25 12:52:59,190 [wrapper] pandaids: 6744921573 6744921573
[2025-07-25 16:02:42] 2025-07-25 12:52:59,586 [wrapper] cleanup supervisor_pilot 2203080 108393
[2025-07-25 16:02:42] 2025-07-25 12:52:59,611 [wrapper] Test setup, not cleaning
[2025-07-25 16:02:42] 2025-07-25 12:52:59,630 [wrapper] apfmon messages muted
[2025-07-25 16:02:42] 2025-07-25 12:52:59,695 [wrapper] ==== wrapper stdout END ====
[2025-07-25 16:02:42] 2025-07-25 12:52:59,731 [wrapper] ==== wrapper stderr END ====
[2025-07-25 16:02:42]  *** Error codes and diagnostics ***
[2025-07-25 16:02:42]     "exeErrorCode": 0,
[2025-07-25 16:02:42]     "exeErrorDiag": "",
[2025-07-25 16:02:42]     "pilotErrorCode": 0,
[2025-07-25 16:02:42]     "pilotErrorDiag": "",
[2025-07-25 16:02:42]  *** Listing of results directory ***
[2025-07-25 16:02:42] total 663504
[2025-07-25 16:02:42] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 14:26 pilot3.tar.gz
[2025-07-25 16:02:42] -rwx------. 1 boincer umatlas     36292 Jul 24 14:30 runpilot2-wrapper.sh
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 14:30 queuedata.json
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas       100 Jul 24 20:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 16:02:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 20:38 run_atlas
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas       105 Jul 24 20:38 job.xml
[2025-07-25 16:02:42] -rw-r--r--. 3 boincer umatlas 231932907 Jul 24 20:38 EVNT.45743347._000313.pool.root.1
[2025-07-25 16:02:42] -rw-r--r--. 3 boincer umatlas 231932907 Jul 24 20:38 ATLAS.root_0
[2025-07-25 16:02:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 20:38 start_atlas.sh
[2025-07-25 16:02:42] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 20:38 shared
[2025-07-25 16:02:42] -rw-r--r--. 2 boincer umatlas    542884 Jul 24 20:38 input.tar.gz
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas         0 Jul 24 20:38 boinc_lockfile
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas      2560 Jul 24 20:46 pandaJob.out
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas    979709 Jul 24 20:47 agis_schedconf.cvmfs.json
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas 205540717 Jul 25 08:43 HITS.45743349._006047.pool.root.1
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas       532 Jul 25 08:43 boinc_task_state.xml
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas      1041 Jul 25 08:50 memory_monitor_summary.json
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas   1593052 Jul 25 08:50 agis_ddmendpoints.agis.ALL.json
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas    584271 Jul 25 08:50 log.45743349._006047.job.log.tgz.1
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas      7836 Jul 25 08:52 heartbeat.json
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas        96 Jul 25 08:52 pilot_heartbeat.json
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas       823 Jul 25 08:52 pilotlog.txt
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas   2490000 Jul 25 08:52 log.45743349._006047.job.log.1
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas       357 Jul 25 08:53 output.list
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas       620 Jul 25 08:53 runtime_log
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas   3092480 Jul 25 08:53 result.tar.gz
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas      8756 Jul 25 08:53 runtime_log.err
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas       787 Jul 25 08:53 r8zMDm7sFz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmA7MLDmdJ96Ym.diag
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas      6858 Jul 25 16:02 init_data.xml
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 16:02 boinc_mmap_file
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas        29 Jul 25 16:02 wrapper_checkpoint.txt
[2025-07-25 16:02:42] -rw-r--r--. 1 boincer umatlas     23521 Jul 25 16:02 stderr.txt
[2025-07-25 16:02:42] HITS file was successfully produced:
[2025-07-25 16:02:42] -rw-------. 1 boincer umatlas 205540717 Jul 25 08:43 shared/HITS.pool.root.1
[2025-07-25 16:02:42]  *** Contents of shared directory: ***
[2025-07-25 16:02:43] total 430796
[2025-07-25 16:02:43] -rw-r--r--. 3 boincer umatlas 231932907 Jul 24 20:38 ATLAS.root_0
[2025-07-25 16:02:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 20:38 start_atlas.sh
[2025-07-25 16:02:43] -rw-r--r--. 2 boincer umatlas    542884 Jul 24 20:38 input.tar.gz
[2025-07-25 16:02:43] -rw-------. 1 boincer umatlas 205540717 Jul 25 08:43 HITS.pool.root.1
[2025-07-25 16:02:43] -rw-------. 1 boincer umatlas   3092480 Jul 25 08:53 result.tar.gz
16:02:44 (91853): run_atlas exited; CPU time 131560.082164
16:02:44 (91853): called boinc_finish(0)

</stderr_txt>
]]>

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