Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:28:46 (16602): wrapper (7.7.26015): starting
20:28:46 (16602): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 20:28:47] Arguments: --nthreads 12
[2025-07-24 20:28:47] Threads: 12
[2025-07-24 20:28:47] Checking for CVMFS
[2025-07-24 20:28:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 20:28:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 20:28:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 20:28:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 20:28:57] 2.11.2.0 4366 108355 82692 148720 2 41 10082717 18432000 4593 130560 0 46480839 99.301 89496289 31044 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 20:28:57] CVMFS is ok
[2025-07-24 20:28:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 20:28:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 20:28:57] Further information can be found at the LHC@home message board.
[2025-07-24 20:28:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 20:28:57] Checking for apptainer binary...
[2025-07-24 20:28:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 20:28:57] Running /usr/bin/apptainer --version
[2025-07-24 20:28:59] apptainer version 1.3.2-1.el7
[2025-07-24 20:29:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 20:29:29] c-206-29.aglt2.org
[2025-07-24 20:29:29] apptainer works
[2025-07-24 20:29:29] Set ATHENA_PROC_NUMBER=12
[2025-07-24 20:29:29] Set ATHENA_CORE_NUMBER=12
[2025-07-24 20:29:30] Starting ATLAS job with PandaID=6744925447
[2025-07-24 20:29:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:31:15 (17990): wrapper (7.7.26015): starting
21:31:15 (17990): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 21:31:16] Arguments: --nthreads 12
[2025-07-24 21:31:16] Threads: 12
[2025-07-24 21:31:16] This job has been restarted, cleaning up previous attempt
[2025-07-24 21:31:16] Checking for CVMFS
[2025-07-24 21:31:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 21:31:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 21:31:19] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 21:31:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 21:31:23] 2.11.2.0 4366 108418 86184 148721 3 18 10100675 18432001 4595 130560 0 46548696 99.302 89497660 31044 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 21:31:23] CVMFS is ok
[2025-07-24 21:31:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 21:31:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 21:31:23] Further information can be found at the LHC@home message board.
[2025-07-24 21:31:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 21:31:23] Checking for apptainer binary...
[2025-07-24 21:31:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 21:31:23] Running /usr/bin/apptainer --version
[2025-07-24 21:31:25] apptainer version 1.3.2-1.el7
[2025-07-24 21:31:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 21:31:43] c-206-29.aglt2.org
[2025-07-24 21:31:43] apptainer works
[2025-07-24 21:31:43] Set ATHENA_PROC_NUMBER=12
[2025-07-24 21:31:43] Set ATHENA_CORE_NUMBER=12
[2025-07-24 21:31:44] Starting ATLAS job with PandaID=6744925447
[2025-07-24 21:31:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 08:23:20]  *** The last 200 lines of the pilot log: ***
[2025-07-25 08:23:20] 2025-07-25 12:22:47,071 | INFO     | intersect: -28884090131.512604
[2025-07-25 08:23:20] 2025-07-25 12:22:47,072 | INFO     | chi2: 12.950296648147445
[2025-07-25 08:23:20] 2025-07-25 12:22:47,072 | INFO     | current chi2=12.950296648147445 (change=6.9147644007167015 %)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,073 | INFO     | right removable region: 622
[2025-07-25 08:23:20] 2025-07-25 12:22:47,074 | INFO     | sum of square deviations: 74970201046.41403
[2025-07-25 08:23:20] 2025-07-25 12:22:47,089 | INFO     | sum of deviations: 959366394418.0015
[2025-07-25 08:23:20] 2025-07-25 12:22:47,089 | INFO     | mean x: 1753427180.2905297
[2025-07-25 08:23:20] 2025-07-25 12:22:47,090 | INFO     | mean y: 2577007.0
[2025-07-25 08:23:20] 2025-07-25 12:22:47,090 | INFO     | -- intersect: -22435392857.698803
[2025-07-25 08:23:20] 2025-07-25 12:22:47,090 | INFO     | intersect: -22435392857.698803
[2025-07-25 08:23:20] 2025-07-25 12:22:47,091 | INFO     | chi2: 8.884566212138877
[2025-07-25 08:23:20] 2025-07-25 12:22:47,091 | INFO     | current chi2=8.884566212138877 (change=36.13876488515143 %)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,093 | INFO     | sum of square deviations: 73179236010.3107
[2025-07-25 08:23:20] 2025-07-25 12:22:47,108 | INFO     | sum of deviations: 762694268399.3213
[2025-07-25 08:23:20] 2025-07-25 12:22:47,108 | INFO     | mean x: 1753427332.7961166
[2025-07-25 08:23:20] 2025-07-25 12:22:47,108 | INFO     | mean y: 2593751.5501618125
[2025-07-25 08:23:20] 2025-07-25 12:22:47,109 | INFO     | -- intersect: -18272111611.455845
[2025-07-25 08:23:20] 2025-07-25 12:22:47,109 | INFO     | intersect: -18272111611.455845
[2025-07-25 08:23:20] 2025-07-25 12:22:47,110 | INFO     | chi2: 5.594773085111998
[2025-07-25 08:23:20] 2025-07-25 12:22:47,110 | INFO     | current chi2=5.594773085111998 (change=37.02817952475917 %)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,112 | INFO     | sum of square deviations: 71417053640.76988
[2025-07-25 08:23:20] 2025-07-25 12:22:47,126 | INFO     | sum of deviations: 601784329372.7659
[2025-07-25 08:23:20] 2025-07-25 12:22:47,127 | INFO     | mean x: 1753427485.300163
[2025-07-25 08:23:20] 2025-07-25 12:22:47,127 | INFO     | mean y: 2607674.3327895594
[2025-07-25 08:23:20] 2025-07-25 12:22:47,127 | INFO     | -- intersect: -14772367342.877382
[2025-07-25 08:23:20] 2025-07-25 12:22:47,127 | INFO     | intersect: -14772367342.877382
[2025-07-25 08:23:20] 2025-07-25 12:22:47,128 | INFO     | chi2: 3.4964226711296096
[2025-07-25 08:23:20] 2025-07-25 12:22:47,129 | INFO     | current chi2=3.4964226711296096 (change=37.50554994922342 %)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,130 | INFO     | sum of square deviations: 69683420460.31595
[2025-07-25 08:23:20] 2025-07-25 12:22:47,144 | INFO     | sum of deviations: 484420850247.3944
[2025-07-25 08:23:20] 2025-07-25 12:22:47,145 | INFO     | mean x: 1753427637.8026316
[2025-07-25 08:23:20] 2025-07-25 12:22:47,145 | INFO     | mean y: 2617991.0032894737
[2025-07-25 08:23:20] 2025-07-25 12:22:47,145 | INFO     | -- intersect: -12186750750.379814
[2025-07-25 08:23:20] 2025-07-25 12:22:47,145 | INFO     | intersect: -12186750750.379814
[2025-07-25 08:23:20] 2025-07-25 12:22:47,146 | INFO     | chi2: 2.4159838953865385
[2025-07-25 08:23:20] 2025-07-25 12:22:47,147 | INFO     | current chi2=2.4159838953865385 (change=30.901263301613575 %)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,148 | INFO     | sum of square deviations: 67977955981.0084
[2025-07-25 08:23:20] 2025-07-25 12:22:47,159 | INFO     | sum of deviations: 410078517148.4792
[2025-07-25 08:23:20] 2025-07-25 12:22:47,159 | INFO     | mean x: 1753427790.310116
[2025-07-25 08:23:20] 2025-07-25 12:22:47,159 | INFO     | mean y: 2624642.7247097846
[2025-07-25 08:23:20] 2025-07-25 12:22:47,159 | INFO     | -- intersect: -10574967133.912296
[2025-07-25 08:23:20] 2025-07-25 12:22:47,159 | INFO     | intersect: -10574967133.912296
[2025-07-25 08:23:20] 2025-07-25 12:22:47,160 | INFO     | chi2: 2.0208951088073253
[2025-07-25 08:23:20] 2025-07-25 12:22:47,160 | INFO     | current chi2=2.0208951088073253 (change=16.3531216964508 %)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,160 | INFO     | left removable region: 50
[2025-07-25 08:23:20] 2025-07-25 12:22:47,161 | INFO     | sum of square deviations: 58022335767.8654
[2025-07-25 08:23:20] 2025-07-25 12:22:47,168 | INFO     | sum of deviations: 213841143956.2308
[2025-07-25 08:23:20] 2025-07-25 12:22:47,168 | INFO     | mean x: 1753428369.8269231
[2025-07-25 08:23:20] 2025-07-25 12:22:47,168 | INFO     | mean y: 2651520.244755245
[2025-07-25 08:23:20] 2025-07-25 12:22:47,168 | INFO     | -- intersect: -6459603462.891586
[2025-07-25 08:23:20] 2025-07-25 12:22:47,168 | INFO     | intersect: -6459603462.891586
[2025-07-25 08:23:20] 2025-07-25 12:22:47,169 | INFO     | chi2: 0.17818332814891955
[2025-07-25 08:23:20] 2025-07-25 12:22:47,169 | INFO     | -- intersect: -6459603462.891586
[2025-07-25 08:23:20] 2025-07-25 12:22:47,169 | INFO     | current memory leak: 3.69 B/s (using 572 data points, chi2=0.18)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,170 | INFO     | could have reported an average CPU frequency of 2647 MHz (24 samples)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,170 | INFO     | ..............................
[2025-07-25 08:23:20] 2025-07-25 12:22:47,170 | INFO     | . Timing measurements:
[2025-07-25 08:23:20] 2025-07-25 12:22:47,170 | INFO     | . get job = 0 s
[2025-07-25 08:23:20] 2025-07-25 12:22:47,170 | INFO     | . initial setup = 11 s
[2025-07-25 08:23:20] 2025-07-25 12:22:47,171 | INFO     | . payload setup = 198 s
[2025-07-25 08:23:20] 2025-07-25 12:22:47,171 | INFO     | . stage-in = 1 s
[2025-07-25 08:23:20] 2025-07-25 12:22:47,171 | INFO     | . payload execution = 38401 s
[2025-07-25 08:23:20] 2025-07-25 12:22:47,171 | INFO     | . stage-out = 2 s
[2025-07-25 08:23:20] 2025-07-25 12:22:47,171 | INFO     | . log creation = 0 s
[2025-07-25 08:23:20] 2025-07-25 12:22:47,171 | INFO     | ..............................
[2025-07-25 08:23:20] 2025-07-25 12:22:47,749 | INFO     | 
[2025-07-25 08:23:20] 2025-07-25 12:22:47,749 | INFO     | job summary report
[2025-07-25 08:23:20] 2025-07-25 12:22:47,749 | INFO     | --------------------------------------------------
[2025-07-25 08:23:20] 2025-07-25 12:22:47,749 | INFO     | PanDA job id: 6744925447
[2025-07-25 08:23:20] 2025-07-25 12:22:47,750 | INFO     | task id: 45743349
[2025-07-25 08:23:20] 2025-07-25 12:22:47,750 | INFO     | errors: (none)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,750 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 08:23:20] 2025-07-25 12:22:47,750 | INFO     | pilot state: finished 
[2025-07-25 08:23:20] 2025-07-25 12:22:47,750 | INFO     | transexitcode: 0
[2025-07-25 08:23:20] 2025-07-25 12:22:47,751 | INFO     | exeerrorcode: 0
[2025-07-25 08:23:20] 2025-07-25 12:22:47,751 | INFO     | exeerrordiag: 
[2025-07-25 08:23:20] 2025-07-25 12:22:47,751 | INFO     | exitcode: 0
[2025-07-25 08:23:20] 2025-07-25 12:22:47,751 | INFO     | exitmsg: OK
[2025-07-25 08:23:20] 2025-07-25 12:22:47,751 | INFO     | cpuconsumptiontime: 119999 s
[2025-07-25 08:23:20] 2025-07-25 12:22:47,752 | INFO     | nevents: 400
[2025-07-25 08:23:20] 2025-07-25 12:22:47,752 | INFO     | neventsw: 0
[2025-07-25 08:23:20] 2025-07-25 12:22:47,752 | INFO     | pid: 30935
[2025-07-25 08:23:20] 2025-07-25 12:22:47,752 | INFO     | pgrp: 30935
[2025-07-25 08:23:20] 2025-07-25 12:22:47,752 | INFO     | corecount: 12
[2025-07-25 08:23:20] 2025-07-25 12:22:47,752 | INFO     | event service: False
[2025-07-25 08:23:20] 2025-07-25 12:22:47,753 | INFO     | sizes: {0: 2396641, 1: 2397242, 3: 2397354, 4: 2397525, 5: 2397553, 17: 2397609, 29: 2397765, 42: 2397793, 55: 2397849, 69: 2397877, 82: 2397905, 96: 2398241, 112:
[2025-07-25 08:23:20] 2025-07-25 12:22:47,753 | INFO     | --------------------------------------------------
[2025-07-25 08:23:20] 2025-07-25 12:22:47,753 | INFO     | 
[2025-07-25 08:23:20] 2025-07-25 12:22:47,753 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 08:23:20] 2025-07-25 12:22:47,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,774 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,774 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,778 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 08:23:20] 2025-07-25 12:22:47,778 | INFO     | job 6744925447 has completed (purged errors)
[2025-07-25 08:23:20] 2025-07-25 12:22:47,778 | INFO     | overall cleanup function is called
[2025-07-25 08:23:20] 2025-07-25 12:22:48,787 | INFO     | --- collectZombieJob: --- 10, [30935]
[2025-07-25 08:23:20] 2025-07-25 12:22:48,794 | INFO     | zombie collector waiting for pid 30935
[2025-07-25 08:23:20] 2025-07-25 12:22:48,794 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 08:23:20] 2025-07-25 12:22:48,794 | INFO     | collected zombie processes
[2025-07-25 08:23:20] 2025-07-25 12:22:48,794 | INFO     | will attempt to kill all subprocesses of pid=30935
[2025-07-25 08:23:20] 2025-07-25 12:22:48,965 | INFO     | process IDs to be killed: [30935] (in reverse order)
[2025-07-25 08:23:20] 2025-07-25 12:22:49,026 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 08:23:20] 2025-07-25 12:22:49,026 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 08:23:20] 2025-07-25 12:22:49,032 | INFO     | did not find any defunct processes belonging to 30935
[2025-07-25 08:23:20] 2025-07-25 12:22:49,037 | INFO     | did not find any defunct processes belonging to 30935
[2025-07-25 08:23:20] 2025-07-25 12:22:49,037 | INFO     | ready for new job
[2025-07-25 08:23:20] 2025-07-25 12:22:49,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 08:23:20] 2025-07-25 12:22:49,040 | INFO     | ***************************************
[2025-07-25 08:23:20] 2025-07-25 12:22:49,040 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 08:23:20] 2025-07-25 12:22:49,040 | INFO     | ***************************************
[2025-07-25 08:23:20] 2025-07-25 12:22:49,040 | INFO     | 
[2025-07-25 08:23:20] 2025-07-25 12:22:49,042 | INFO     | architecture information:
[2025-07-25 08:23:20] 2025-07-25 12:22:49,042 | INFO     | executing command: cat /etc/os-release
[2025-07-25 08:23:20] 2025-07-25 12:22:49,057 | INFO     | cat /etc/os-release:
[2025-07-25 08:23:20] NAME="CentOS Linux"
[2025-07-25 08:23:20] VERSION="7 (Core)"
[2025-07-25 08:23:20] ID="centos"
[2025-07-25 08:23:20] ID_LIKE="rhel fedora"
[2025-07-25 08:23:20] VERSION_ID="7"
[2025-07-25 08:23:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 08:23:20] ANSI_COLOR="0;31"
[2025-07-25 08:23:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 08:23:20] HOME_URL="https://www.centos.org/"
[2025-07-25 08:23:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 08:23:20] 
[2025-07-25 08:23:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 08:23:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 08:23:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 08:23:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 08:23:20] 
[2025-07-25 08:23:20] 2025-07-25 12:22:49,058 | INFO     | ***************************************
[2025-07-25 08:23:20] 2025-07-25 12:22:49,561 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 08:23:20] 2025-07-25 12:22:49,578 | INFO     | sufficient remaining disk space (29315039232 B)
[2025-07-25 08:23:20] 2025-07-25 12:22:49,579 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 08:23:20] 2025-07-25 12:22:49,579 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 08:23:20] 2025-07-25 12:22:49,579 | INFO     | update_server=False
[2025-07-25 08:23:20] 2025-07-25 12:22:49,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 08:23:20] 2025-07-25 12:22:49,685 | INFO     | all data control threads have been joined
[2025-07-25 08:23:20] 2025-07-25 12:22:49,702 | INFO     | all payload control threads have been joined
[2025-07-25 08:23:20] 2025-07-25 12:22:49,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:23:20] 2025-07-25 12:22:49,887 | INFO     | aborting loop
[2025-07-25 08:23:20] 2025-07-25 12:22:49,995 | INFO     | all job control threads have been joined
[2025-07-25 08:23:20] 2025-07-25 12:22:50,584 | INFO     | [job] retrieve thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:50,691 | INFO     | [data] control thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:50,708 | INFO     | [payload] control thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:50,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 08:23:20] 2025-07-25 12:22:50,893 | INFO     | [job] job monitor thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:51,001 | INFO     | [job] control thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:51,206 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:51,367 | INFO     | [payload] failed_post thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:51,374 | INFO     | [job] validate thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:51,524 | INFO     | [data] copytool_in thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:51,883 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 08:23:20] 2025-07-25 12:22:52,030 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:52,077 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:52,084 | INFO     | [payload] validate_post thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:52,323 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 08:23:20] 2025-07-25 12:22:52,851 | INFO     | [data] copytool_out thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:53,328 | INFO     | [job] queue monitor thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:55,891 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:22:59,884 | INFO     | job.realtimelogging is not enabled
[2025-07-25 08:23:20] 2025-07-25 12:23:00,889 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 08:23:20] 2025-07-25 12:23:01,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432638560064)>', '<ExcThread(monitor, started 140432067520256)>']
[2025-07-25 08:23:20] 2025-07-25 12:23:06,561 | INFO     | all workflow threads have been joined
[2025-07-25 08:23:20] 2025-07-25 12:23:06,594 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 08:23:20] 2025-07-25 12:23:06,615 | INFO     | traces error code: 0
[2025-07-25 08:23:20] 2025-07-25 12:23:06,616 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 08:23:20] 2025-07-25 12:23:19,373 | INFO     | PID=22530 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-25 08:23:20] 2025-07-25 12:23:19,374 | INFO     | .. there are 3 such processes running
[2025-07-25 08:23:20] 2025-07-25 12:23:19,374 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 08:23:20] 2025-07-25 12:23:19,374 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 08:23:20] 2025-07-25 12:23:19,374 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 08:23:20] 2025-07-25 12:23:19,374 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 08:23:20] 2025-07-25 12:23:19,375 | INFO     | [monitor] control thread has ended
[2025-07-25 08:23:20] 2025-07-25 12:23:19,588 [wrapper] ==== pilot stdout END ====
[2025-07-25 08:23:20] 2025-07-25 12:23:19,591 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 08:23:20] 2025-07-25 12:23:19,593 [wrapper] pilotpid: 22530
[2025-07-25 08:23:20] 2025-07-25 12:23:19,596 [wrapper] Pilot exit status: 0
[2025-07-25 08:23:20] 2025-07-25 12:23:19,615 [wrapper] pandaids: 6744925447 6744925447
[2025-07-25 08:23:20] 2025-07-25 12:23:19,659 [wrapper] cleanup supervisor_pilot  9610 22531
[2025-07-25 08:23:20] 2025-07-25 12:23:19,662 [wrapper] Test setup, not cleaning
[2025-07-25 08:23:20] 2025-07-25 12:23:19,666 [wrapper] apfmon messages muted
[2025-07-25 08:23:20] 2025-07-25 12:23:19,669 [wrapper] ==== wrapper stdout END ====
[2025-07-25 08:23:20] 2025-07-25 12:23:19,672 [wrapper] ==== wrapper stderr END ====
[2025-07-25 08:23:20]  *** Error codes and diagnostics ***
[2025-07-25 08:23:20]     "exeErrorCode": 0,
[2025-07-25 08:23:20]     "exeErrorDiag": "",
[2025-07-25 08:23:20]     "pilotErrorCode": 0,
[2025-07-25 08:23:20]     "pilotErrorDiag": "",
[2025-07-25 08:23:20]  *** Listing of results directory ***
[2025-07-25 08:23:20] total 499400
[2025-07-25 08:23:20] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas      5112 Jul 24 15:12 queuedata.json
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas    530466 Jul 24 15:13 pilot3.tar.gz
[2025-07-25 08:23:20] -rwx------ 1 boincer umatlas     36292 Jul 24 15:14 runpilot2-wrapper.sh
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas       100 Jul 24 20:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 08:23:20] -rwxr-xr-x 1 boincer umatlas      7986 Jul 24 20:28 run_atlas
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas       105 Jul 24 20:28 job.xml
[2025-07-25 08:23:20] -rw-r--r-- 3 boincer umatlas 145324925 Jul 24 20:28 EVNT.45743347._000385.pool.root.1
[2025-07-25 08:23:20] -rw-r--r-- 3 boincer umatlas 145324925 Jul 24 20:28 ATLAS.root_0
[2025-07-25 08:23:20] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 20:28 start_atlas.sh
[2025-07-25 08:23:20] drwxrwx--x 2 boincer umatlas      4096 Jul 24 20:28 shared
[2025-07-25 08:23:20] -rw-r--r-- 2 boincer umatlas    542877 Jul 24 20:28 input.tar.gz
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas         0 Jul 24 20:28 boinc_lockfile
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas      2560 Jul 24 21:31 pandaJob.out
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas    979709 Jul 24 21:35 agis_schedconf.cvmfs.json
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas 209710648 Jul 25 08:21 HITS.45743349._007273.pool.root.1
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas       532 Jul 25 08:21 boinc_task_state.xml
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas      1063 Jul 25 08:22 memory_monitor_summary.json
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas   1593052 Jul 25 08:22 agis_ddmendpoints.agis.ALL.json
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas    659415 Jul 25 08:22 log.45743349._007273.job.log.tgz.1
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas      5952 Jul 25 08:22 init_data.xml
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas        96 Jul 25 08:22 pilot_heartbeat.json
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas      7878 Jul 25 08:22 heartbeat.json
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas      8192 Jul 25 08:23 boinc_mmap_file
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas        29 Jul 25 08:23 wrapper_checkpoint.txt
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas       820 Jul 25 08:23 pilotlog.txt
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas   2917696 Jul 25 08:23 log.45743349._007273.job.log.1
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas       357 Jul 25 08:23 output.list
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas       620 Jul 25 08:23 runtime_log
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas   3594240 Jul 25 08:23 result.tar.gz
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas      8748 Jul 25 08:23 runtime_log.err
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas       790 Jul 25 08:23 FiSKDmWZGz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVHNLDm3XA7vm.diag
[2025-07-25 08:23:20] -rw-r--r-- 1 boincer umatlas     23184 Jul 25 08:23 stderr.txt
[2025-07-25 08:23:20] HITS file was successfully produced:
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas 209710648 Jul 25 08:21 shared/HITS.pool.root.1
[2025-07-25 08:23:20]  *** Contents of shared directory: ***
[2025-07-25 08:23:20] total 350780
[2025-07-25 08:23:20] -rw-r--r-- 3 boincer umatlas 145324925 Jul 24 20:28 ATLAS.root_0
[2025-07-25 08:23:20] -rw-r--r-- 2 boincer umatlas     15095 Jul 24 20:28 start_atlas.sh
[2025-07-25 08:23:20] -rw-r--r-- 2 boincer umatlas    542877 Jul 24 20:28 input.tar.gz
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas 209710648 Jul 25 08:21 HITS.pool.root.1
[2025-07-25 08:23:20] -rw------- 1 boincer umatlas   3594240 Jul 25 08:23 result.tar.gz
08:23:21 (17990): run_atlas exited; CPU time 120663.677565
08:23:21 (17990): called boinc_finish(0)

</stderr_txt>
]]>

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