Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:14:14 (3394744): wrapper (7.7.26015): starting
09:14:14 (3394744): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 09:14:14] Arguments: --nthreads 12
[2025-07-25 09:14:14] Threads: 12
[2025-07-25 09:14:14] Checking for CVMFS
[2025-07-25 09:14:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 09:14:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 09:14:15] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 09:14:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 09:14:16] 2.13.1.0 3863 988 118068 148730 1 196 40953667 46080000 36674 130560 0 5991206 99.979 518587 7054 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-25 09:14:16] CVMFS is ok
[2025-07-25 09:14:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 09:14:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 09:14:16] Further information can be found at the LHC@home message board.
[2025-07-25 09:14:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 09:14:16] Checking for apptainer binary...
[2025-07-25 09:14:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 09:14:16] Running /usr/bin/apptainer --version
[2025-07-25 09:14:17] apptainer version 1.4.1-1.el9
[2025-07-25 09:14:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 09:22:46] mff2103.farm.particle.cz
[2025-07-25 09:22:46] apptainer works
[2025-07-25 09:22:46] Set ATHENA_PROC_NUMBER=12
[2025-07-25 09:22:46] Set ATHENA_CORE_NUMBER=12
[2025-07-25 09:22:46] Starting ATLAS job with PandaID=6744922517
[2025-07-25 09:22:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 11:20:37]  *** The last 200 lines of the pilot log: ***
[2025-07-25 11:20:37] 2025-07-25 09:07:40,181 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 11:20:37] 2025-07-25 09:07:41,904 | INFO     | monitor loop #440: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:07:41,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:07:44,410 | INFO     | monitor loop #441: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:07:44,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:07:46,915 | INFO     | monitor loop #442: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:07:46,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:07:49,420 | INFO     | monitor loop #443: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:07:49,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:07:51,924 | INFO     | monitor loop #444: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:07:51,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:07:54,428 | INFO     | monitor loop #445: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:07:54,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:07:56,933 | INFO     | monitor loop #446: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:07:56,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:07:57,613 | INFO     | PID=3476166 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 11:20:37] 2025-07-25 09:07:57,618 | INFO     | .. there are 68 such processes running
[2025-07-25 11:20:37] 2025-07-25 09:07:59,437 | INFO     | monitor loop #447: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:07:59,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:08:01,942 | INFO     | monitor loop #448: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:08:01,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:08:04,447 | INFO     | monitor loop #449: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:08:04,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:08:06,953 | INFO     | monitor loop #450: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:08:06,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:08:09,458 | INFO     | monitor loop #451: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:08:09,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:08:11,969 | INFO     | monitor loop #452: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:08:11,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:08:14,478 | INFO     | monitor loop #453: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:08:14,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:08:16,987 | INFO     | monitor loop #454: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:08:16,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:08:19,495 | INFO     | monitor loop #455: job 0:6744922517 is in state 'finished'
[2025-07-25 11:20:37] 2025-07-25 09:08:19,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:20:37] 2025-07-25 09:08:20,266 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 11:20:37] 2025-07-25 09:08:20,331 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2842.701791666667
[2025-07-25 11:20:37] 2025-07-25 09:08:20,365 | INFO     | using path: /scratch/.boinc/slots/5/PanDA_Pilot-6744922517/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 11:20:37] 2025-07-25 09:08:20,365 | INFO     | extracted standard info from prmon json
[2025-07-25 11:20:37] 2025-07-25 09:08:20,365 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 11:20:37] 2025-07-25 09:08:20,366 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 11:20:37] 2025-07-25 09:08:20,366 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 11:20:37] 2025-07-25 09:08:20,366 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 11:20:37] 2025-07-25 09:08:20,368 | INFO     | fitting pss+swap vs Time
[2025-07-25 11:20:37] 2025-07-25 09:08:20,368 | INFO     | sum of square deviations: 241425008.95652175
[2025-07-25 11:20:37] 2025-07-25 09:08:20,369 | INFO     | sum of deviations: 4882949150.956522
[2025-07-25 11:20:37] 2025-07-25 09:08:20,369 | INFO     | mean x: 1753431540.5217392
[2025-07-25 11:20:37] 2025-07-25 09:08:20,369 | INFO     | mean y: 2691785.7717391304
[2025-07-25 11:20:37] 2025-07-25 09:08:20,369 | INFO     | -- intersect: -35461393269.28124
[2025-07-25 11:20:37] 2025-07-25 09:08:20,369 | INFO     | intersect: -35461393269.28124
[2025-07-25 11:20:37] 2025-07-25 09:08:20,369 | INFO     | chi2: 0.33232782288552104
[2025-07-25 11:20:37] 2025-07-25 09:08:20,369 | INFO     | -- intersect: -35461393269.28124
[2025-07-25 11:20:37] 2025-07-25 09:08:20,369 | INFO     | current memory leak: 20.23 B/s (using 92 data points, chi2=0.33)
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | could have reported an average CPU frequency of 2814 MHz (7 samples)
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | ..............................
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | . Timing measurements:
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | . get job = 0 s
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | . initial setup = 7 s
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | . payload setup = 76 s
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | . stage-in = 0 s
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | . payload execution = 6027 s
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | . stage-out = 1 s
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | . log creation = 0 s
[2025-07-25 11:20:37] 2025-07-25 09:08:20,370 | INFO     | ..............................
[2025-07-25 11:20:37] 2025-07-25 09:08:20,555 | INFO     | 
[2025-07-25 11:20:37] 2025-07-25 09:08:20,555 | INFO     | job summary report
[2025-07-25 11:20:37] 2025-07-25 09:08:20,555 | INFO     | --------------------------------------------------
[2025-07-25 11:20:37] 2025-07-25 09:08:20,555 | INFO     | PanDA job id: 6744922517
[2025-07-25 11:20:37] 2025-07-25 09:08:20,555 | INFO     | task id: 45743349
[2025-07-25 11:20:37] 2025-07-25 09:08:20,555 | INFO     | errors: (none)
[2025-07-25 11:20:37] 2025-07-25 09:08:20,555 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | pilot state: finished 
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | transexitcode: 0
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | exeerrorcode: 0
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | exeerrordiag: 
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | exitcode: 0
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | exitmsg: OK
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | cpuconsumptiontime: 45489 s
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | nevents: 400
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | neventsw: 0
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | pid: 3520224
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | pgrp: 3520224
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | corecount: 12
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | event service: False
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | sizes: {0: 2397299, 1: 2397498, 12: 2397498, 23: 2397526, 33: 2397554, 44: 2398028, 6108: 2425006, 6110: 2434006, 6112: 2434062, 6155: 2434256}
[2025-07-25 11:20:37] 2025-07-25 09:08:20,556 | INFO     | --------------------------------------------------
[2025-07-25 11:20:37] 2025-07-25 09:08:20,557 | INFO     | 
[2025-07-25 11:20:37] 2025-07-25 09:08:20,557 | INFO     | executing command: ls -lF /scratch/.boinc/slots/5
[2025-07-25 11:20:37] 2025-07-25 09:08:20,733 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,733 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,734 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,735 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 11:20:37] 2025-07-25 09:08:20,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,735 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 11:20:37] 2025-07-25 09:08:20,735 | INFO     | job 6744922517 has completed (purged errors)
[2025-07-25 11:20:37] 2025-07-25 09:08:20,735 | INFO     | overall cleanup function is called
[2025-07-25 11:20:37] 2025-07-25 09:08:20,802 | INFO     | PID=3476166 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 11:20:37] 2025-07-25 09:08:20,802 | INFO     | .. there are 68 such processes running
[2025-07-25 11:20:37] 2025-07-25 09:08:21,745 | INFO     | --- collectZombieJob: --- 10, [3520224]
[2025-07-25 11:20:37] 2025-07-25 09:08:21,747 | INFO     | zombie collector waiting for pid 3520224
[2025-07-25 11:20:37] 2025-07-25 09:08:21,747 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 11:20:37] 2025-07-25 09:08:21,747 | INFO     | collected zombie processes
[2025-07-25 11:20:37] 2025-07-25 09:08:21,748 | INFO     | will attempt to kill all subprocesses of pid=3520224
[2025-07-25 11:20:37] 2025-07-25 09:08:24,219 | INFO     | process IDs to be killed: [3520224] (in reverse order)
[2025-07-25 11:20:37] 2025-07-25 09:08:24,921 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 11:20:37] 2025-07-25 09:08:24,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 11:20:37] 2025-07-25 09:08:24,955 | INFO     | did not find any defunct processes belonging to 3520224
[2025-07-25 11:20:37] 2025-07-25 09:08:24,982 | INFO     | did not find any defunct processes belonging to 3520224
[2025-07-25 11:20:37] 2025-07-25 09:08:24,982 | INFO     | ready for new job
[2025-07-25 11:20:37] 2025-07-25 09:08:24,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 11:20:37] 2025-07-25 09:08:24,985 | INFO     | ***************************************
[2025-07-25 11:20:37] 2025-07-25 09:08:24,985 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 11:20:37] 2025-07-25 09:08:24,985 | INFO     | ***************************************
[2025-07-25 11:20:37] 2025-07-25 09:08:24,985 | INFO     | 
[2025-07-25 11:20:37] 2025-07-25 09:08:24,991 | INFO     | architecture information:
[2025-07-25 11:20:37] 2025-07-25 09:08:25,003 | INFO     | executing command: cat /etc/os-release
[2025-07-25 11:20:37] 2025-07-25 09:08:25,032 | INFO     | cat /etc/os-release:
[2025-07-25 11:20:37] NAME="CentOS Linux"
[2025-07-25 11:20:37] VERSION="7 (Core)"
[2025-07-25 11:20:37] ID="centos"
[2025-07-25 11:20:37] ID_LIKE="rhel fedora"
[2025-07-25 11:20:37] VERSION_ID="7"
[2025-07-25 11:20:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 11:20:37] ANSI_COLOR="0;31"
[2025-07-25 11:20:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 11:20:37] HOME_URL="https://www.centos.org/"
[2025-07-25 11:20:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 11:20:37] 
[2025-07-25 11:20:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 11:20:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 11:20:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 11:20:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 11:20:37] 
[2025-07-25 11:20:37] 2025-07-25 09:08:25,032 | INFO     | ***************************************
[2025-07-25 11:20:37] 2025-07-25 09:08:25,536 | INFO     | executing command: df -mP /scratch/.boinc/slots/5
[2025-07-25 11:20:37] 2025-07-25 09:08:25,653 | INFO     | sufficient remaining disk space (1671309557760 B)
[2025-07-25 11:20:37] 2025-07-25 09:08:25,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 11:20:37] 2025-07-25 09:08:25,654 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 11:20:37] 2025-07-25 09:08:25,654 | INFO     | update_server=False
[2025-07-25 11:20:37] 2025-07-25 09:08:25,654 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 11:20:37] 2025-07-25 09:08:25,656 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 11:20:37] 2025-07-25 09:08:25,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 11:20:37] 2025-07-25 09:08:25,660 | INFO     | aborting loop
[2025-07-25 11:20:37] 2025-07-25 09:08:25,818 | INFO     | all data control threads have been joined
[2025-07-25 11:20:37] 2025-07-25 09:08:25,984 | INFO     | all job control threads have been joined
[2025-07-25 11:20:37] 2025-07-25 09:08:26,524 | INFO     | all payload control threads have been joined
[2025-07-25 11:20:37] 2025-07-25 09:08:26,661 | INFO     | [job] retrieve thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:26,662 | INFO     | [job] queue monitor thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:26,666 | INFO     | [job] job monitor thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:26,824 | INFO     | [data] control thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:26,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 11:20:37] 2025-07-25 09:08:26,992 | INFO     | [job] control thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:27,217 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:27,217 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:27,526 | INFO     | [data] copytool_in thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:27,530 | INFO     | [payload] control thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:27,724 | INFO     | [payload] validate_post thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:27,728 | INFO     | [job] validate thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:27,866 | INFO     | [payload] failed_post thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:27,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:28,061 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:28,758 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 11:20:37] 2025-07-25 09:08:28,877 | INFO     | [data] copytool_out thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:32,768 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 11:20:37] 2025-07-25 09:08:33,041 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612502480704)>', '<ExcThread(monitor, started 140611793450752)>']
[2025-07-25 11:20:37] 2025-07-25 09:08:38,066 | INFO     | all workflow threads have been joined
[2025-07-25 11:20:37] 2025-07-25 09:08:38,066 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 11:20:37] 2025-07-25 09:08:38,066 | INFO     | traces error code: 0
[2025-07-25 11:20:37] 2025-07-25 09:08:38,066 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 11:20:37] 2025-07-25 09:08:53,669 | INFO     | PID=3476166 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 11:20:37] 2025-07-25 09:08:53,670 | INFO     | .. there are 68 such processes running
[2025-07-25 11:20:37] 2025-07-25 09:08:53,670 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 11:20:37] 2025-07-25 09:08:53,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 11:20:37] 2025-07-25 09:08:53,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 11:20:37] 2025-07-25 09:08:53,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 11:20:37] 2025-07-25 09:08:53,670 | INFO     | [monitor] control thread has ended
[2025-07-25 11:20:37] 2025-07-25 09:08:54,107 [wrapper] ==== pilot stdout END ====
[2025-07-25 11:20:37] 2025-07-25 09:08:54,149 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 11:20:37] 2025-07-25 09:08:54,194 [wrapper] pilotpid: 3476166
[2025-07-25 11:20:37] 2025-07-25 09:08:54,244 [wrapper] Pilot exit status: 0
[2025-07-25 11:20:37] 2025-07-25 09:08:54,426 [wrapper] pandaids: 6744922517
[2025-07-25 11:20:37] 2025-07-25 09:08:54,850 [wrapper] cleanup supervisor_pilot 3681301 3476167
[2025-07-25 11:20:37] 2025-07-25 09:08:54,882 [wrapper] Test setup, not cleaning
[2025-07-25 11:20:37] 2025-07-25 09:08:54,918 [wrapper] apfmon messages muted
[2025-07-25 11:20:37] 2025-07-25 09:08:54,951 [wrapper] ==== wrapper stdout END ====
[2025-07-25 11:20:37] 2025-07-25 09:08:54,992 [wrapper] ==== wrapper stderr END ====
[2025-07-25 11:20:37]  *** Error codes and diagnostics ***
[2025-07-25 11:20:38]     "exeErrorCode": 0,
[2025-07-25 11:20:38]     "exeErrorDiag": "",
[2025-07-25 11:20:38]     "pilotErrorCode": 0,
[2025-07-25 11:20:38]     "pilotErrorDiag": "",
[2025-07-25 11:20:38]  *** Listing of results directory ***
[2025-07-25 11:20:38] total 441316
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc    530466 Jul 24 20:26 pilot3.tar.gz
[2025-07-25 11:20:38] -rwx------ 1 boinc boinc     36292 Jul 24 20:55 runpilot2-wrapper.sh
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc      5112 Jul 24 20:56 queuedata.json
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc       100 Jul 25 09:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 11:20:38] -rwxr-xr-x 1 boinc boinc      7986 Jul 25 09:14 run_atlas
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc       105 Jul 25 09:14 job.xml
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc      6664 Jul 25 09:14 init_data.xml
[2025-07-25 11:20:38] -rw-r--r-- 2 boinc boinc 231694318 Jul 25 09:14 EVNT.45743347._000345.pool.root.1
[2025-07-25 11:20:38] -rw-r--r-- 2 boinc boinc     15095 Jul 25 09:14 start_atlas.sh
[2025-07-25 11:20:38] drwxrwx--x 2 boinc boinc      4096 Jul 25 09:14 shared
[2025-07-25 11:20:38] -rw-r--r-- 2 boinc boinc    542886 Jul 25 09:14 input.tar.gz
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc         0 Jul 25 09:14 boinc_lockfile
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc      2560 Jul 25 09:22 pandaJob.out
[2025-07-25 11:20:38] -rw------- 1 boinc boinc    979709 Jul 25 09:24 agis_schedconf.cvmfs.json
[2025-07-25 11:20:38] -rw------- 1 boinc boinc   1593052 Jul 25 09:24 agis_ddmendpoints.agis.ALL.json
[2025-07-25 11:20:38] drwx------ 4 boinc boinc      4096 Jul 25 09:24 pilot3
[2025-07-25 11:20:38] -rw------- 1 boinc boinc 214452738 Jul 25 11:06 HITS.45743349._006628.pool.root.1
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc       529 Jul 25 11:06 boinc_task_state.xml
[2025-07-25 11:20:38] -rw------- 1 boinc boinc      1021 Jul 25 11:07 memory_monitor_summary.json
[2025-07-25 11:20:38] -rw------- 1 boinc boinc    374842 Jul 25 11:07 log.45743349._006628.job.log.tgz.1
[2025-07-25 11:20:38] -rw------- 1 boinc boinc        95 Jul 25 11:08 pilot_heartbeat.json
[2025-07-25 11:20:38] -rw------- 1 boinc boinc      7775 Jul 25 11:08 heartbeat.json
[2025-07-25 11:20:38] -rw------- 1 boinc boinc       823 Jul 25 11:08 pilotlog.txt
[2025-07-25 11:20:38] -rw------- 1 boinc boinc    566648 Jul 25 11:08 log.45743349._006628.job.log.1
[2025-07-25 11:20:38] -rw------- 1 boinc boinc       357 Jul 25 11:08 output.list
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc       620 Jul 25 11:08 runtime_log
[2025-07-25 11:20:38] -rw------- 1 boinc boinc    962560 Jul 25 11:08 result.tar.gz
[2025-07-25 11:20:38] -rw------- 1 boinc boinc       663 Jul 25 11:08 tjKLDmuHGz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIUxKDmz4hWcn.diag
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc      8721 Jul 25 11:08 runtime_log.err
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc        26 Jul 25 11:20 wrapper_checkpoint.txt
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc      8192 Jul 25 11:20 boinc_mmap_file
[2025-07-25 11:20:38] -rw-r--r-- 1 boinc boinc     22672 Jul 25 11:20 stderr.txt
[2025-07-25 11:20:38] HITS file was successfully produced:
[2025-07-25 11:20:38] -rw------- 1 boinc boinc 214452738 Jul 25 11:06 shared/HITS.pool.root.1
[2025-07-25 11:20:38]  *** Contents of shared directory: ***
[2025-07-25 11:20:38] total 437188
[2025-07-25 11:20:38] -rw-r--r-- 2 boinc boinc 231694318 Jul 25 09:14 ATLAS.root_0
[2025-07-25 11:20:38] -rw-r--r-- 2 boinc boinc     15095 Jul 25 09:14 start_atlas.sh
[2025-07-25 11:20:38] -rw-r--r-- 2 boinc boinc    542886 Jul 25 09:14 input.tar.gz
[2025-07-25 11:20:38] -rw------- 1 boinc boinc 214452738 Jul 25 11:06 HITS.pool.root.1
[2025-07-25 11:20:38] -rw------- 1 boinc boinc    962560 Jul 25 11:08 result.tar.gz
11:20:40 (3394744): run_atlas exited; CPU time 45766.779935
11:20:40 (3394744): called boinc_finish(0)

</stderr_txt>
]]>

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