Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:42:57 (1654095): wrapper (7.7.26015): starting
14:42:57 (1654095): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 14:42:57] Arguments: --nthreads 4
[2025-07-27 14:42:57] Threads: 4
[2025-07-27 14:42:57] Checking for CVMFS
[2025-07-27 14:42:57] No cvmfs_config command found, will try listing directly
[2025-07-27 14:42:57] CVMFS is ok
[2025-07-27 14:42:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 14:42:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 14:42:57] Further information can be found at the LHC@home message board.
[2025-07-27 14:42:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 14:42:57] Checking for apptainer binary...
[2025-07-27 14:42:57] which: no apptainer in ((null))
[2025-07-27 14:42:57] apptainer is not installed, using version from CVMFS
[2025-07-27 14:42:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 14:42:57] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-27 14:42:57] apptainer works
[2025-07-27 14:42:57] Set ATHENA_PROC_NUMBER=4
[2025-07-27 14:42:57] Set ATHENA_CORE_NUMBER=4
[2025-07-27 14:42:57] Starting ATLAS job with PandaID=6744917049
[2025-07-27 14:42:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:30:31 (2085462): wrapper (7.7.26015): starting
15:30:31 (2085462): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 15:30:31] Arguments: --nthreads 4
[2025-07-27 15:30:31] Threads: 4
[2025-07-27 15:30:31] This job has been restarted, cleaning up previous attempt
[2025-07-27 15:30:31] Checking for CVMFS
[2025-07-27 15:30:31] No cvmfs_config command found, will try listing directly
[2025-07-27 15:30:31] CVMFS is ok
[2025-07-27 15:30:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:30:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:30:31] Further information can be found at the LHC@home message board.
[2025-07-27 15:30:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:30:31] Checking for apptainer binary...
[2025-07-27 15:30:31] which: no apptainer in ((null))
[2025-07-27 15:30:31] apptainer is not installed, using version from CVMFS
[2025-07-27 15:30:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:30:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-27 15:30:31] apptainer works
[2025-07-27 15:30:32] Set ATHENA_PROC_NUMBER=4
[2025-07-27 15:30:32] Set ATHENA_CORE_NUMBER=4
[2025-07-27 15:30:32] Starting ATLAS job with PandaID=6744917049
[2025-07-27 15:30:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:47:14]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:47:14] 2025-07-27 16:46:37,710 | INFO     | maximum number of monitored processes: 6
[2025-07-27 18:47:14] 2025-07-27 16:46:40,213 | INFO     | monitor loop #807: job 0:6744917049 is in state 'finished'
[2025-07-27 18:47:14] 2025-07-27 16:46:40,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:47:14] 2025-07-27 16:46:41,833 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:47:14] 2025-07-27 16:46:41,852 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2711.619867187501
[2025-07-27 18:47:14] 2025-07-27 16:46:41,876 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6744917049/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:47:14] 2025-07-27 16:46:41,876 | INFO     | extracted standard info from prmon json
[2025-07-27 18:47:14] 2025-07-27 16:46:41,877 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:47:14] 2025-07-27 16:46:41,877 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:47:14] 2025-07-27 16:46:41,877 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:47:14] 2025-07-27 16:46:41,877 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:47:14] 2025-07-27 16:46:41,881 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:47:14] 2025-07-27 16:46:41,881 | INFO     | sum of square deviations: 2194675568.0
[2025-07-27 18:47:14] 2025-07-27 16:46:41,882 | INFO     | sum of deviations: 26234379891.5
[2025-07-27 18:47:14] 2025-07-27 16:46:41,882 | INFO     | mean x: 1753628902.5
[2025-07-27 18:47:14] 2025-07-27 16:46:41,883 | INFO     | mean y: 2313244.453125
[2025-07-27 18:47:14] 2025-07-27 16:46:41,883 | INFO     | -- intersect: -20959949919.948772
[2025-07-27 18:47:14] 2025-07-27 16:46:41,883 | INFO     | intersect: -20959949919.948772
[2025-07-27 18:47:14] 2025-07-27 16:46:41,883 | INFO     | chi2: 1.3939417661342457
[2025-07-27 18:47:14] 2025-07-27 16:46:41,883 | INFO     | sum of square deviations: 2027639878.0
[2025-07-27 18:47:14] 2025-07-27 16:46:41,884 | INFO     | sum of deviations: 25439935685.999996
[2025-07-27 18:47:14] 2025-07-27 16:46:41,885 | INFO     | mean x: 1753628750.0
[2025-07-27 18:47:14] 2025-07-27 16:46:41,885 | INFO     | mean y: 2312519.112299465
[2025-07-27 18:47:14] 2025-07-27 16:46:41,885 | INFO     | -- intersect: -21999722014.320053
[2025-07-27 18:47:14] 2025-07-27 16:46:41,885 | INFO     | intersect: -21999722014.320053
[2025-07-27 18:47:14] 2025-07-27 16:46:41,885 | INFO     | chi2: 1.3947724101118264
[2025-07-27 18:47:14] 2025-07-27 16:46:41,885 | INFO     | current chi2=1.3947724101118264 (change=-0.059589575243468695 %)
[2025-07-27 18:47:14] 2025-07-27 16:46:41,885 | INFO     | right removable region: 186
[2025-07-27 18:47:14] 2025-07-27 16:46:41,886 | INFO     | sum of square deviations: 2027639878.0
[2025-07-27 18:47:14] 2025-07-27 16:46:41,887 | INFO     | sum of deviations: 570563377.9999999
[2025-07-27 18:47:14] 2025-07-27 16:46:41,887 | INFO     | mean x: 1753629055.0
[2025-07-27 18:47:14] 2025-07-27 16:46:41,887 | INFO     | mean y: 2336375.251336898
[2025-07-27 18:47:14] 2025-07-27 16:46:41,887 | INFO     | -- intersect: -491122314.4478739
[2025-07-27 18:47:14] 2025-07-27 16:46:41,887 | INFO     | intersect: -491122314.4478739
[2025-07-27 18:47:14] 2025-07-27 16:46:41,888 | INFO     | chi2: 0.003563704678438892
[2025-07-27 18:47:14] 2025-07-27 16:46:41,888 | INFO     | current chi2=0.003563704678438892 (change=99.74434336031683 %)
[2025-07-27 18:47:14] 2025-07-27 16:46:41,888 | INFO     | sum of square deviations: 1869302025.5
[2025-07-27 18:47:14] 2025-07-27 16:46:41,889 | INFO     | sum of deviations: -214768464.49999988
[2025-07-27 18:47:14] 2025-07-27 16:46:41,889 | INFO     | mean x: 1753629207.5
[2025-07-27 18:47:14] 2025-07-27 16:46:41,889 | INFO     | mean y: 2337126.2472527474
[2025-07-27 18:47:14] 2025-07-27 16:46:41,889 | INFO     | -- intersect: 203815671.21185654
[2025-07-27 18:47:14] 2025-07-27 16:46:41,890 | INFO     | intersect: 203815671.21185654
[2025-07-27 18:47:14] 2025-07-27 16:46:41,890 | INFO     | chi2: 0.0027089108974625077
[2025-07-27 18:47:14] 2025-07-27 16:46:41,890 | INFO     | current chi2=0.0027089108974625077 (change=23.986100367632964 %)
[2025-07-27 18:47:14] 2025-07-27 16:46:41,890 | INFO     | left removable region: 20
[2025-07-27 18:47:14] 2025-07-27 16:46:41,890 | INFO     | sum of square deviations: 1418361477.5
[2025-07-27 18:47:14] 2025-07-27 16:46:41,891 | INFO     | sum of deviations: 317784288.4999998
[2025-07-27 18:47:14] 2025-07-27 16:46:41,891 | INFO     | mean x: 1753629329.5
[2025-07-27 18:47:14] 2025-07-27 16:46:41,891 | INFO     | mean y: 2336288.5963855423
[2025-07-27 18:47:14] 2025-07-27 16:46:41,891 | INFO     | -- intersect: -390564856.5687681
[2025-07-27 18:47:14] 2025-07-27 16:46:41,892 | INFO     | intersect: -390564856.5687681
[2025-07-27 18:47:14] 2025-07-27 16:46:41,892 | INFO     | chi2: 0.0023037951123723835
[2025-07-27 18:47:14] 2025-07-27 16:46:41,892 | INFO     | -- intersect: -390564856.5687681
[2025-07-27 18:47:14] 2025-07-27 16:46:41,892 | INFO     | current memory leak: 0.22 B/s (using 166 data points, chi2=0.00)
[2025-07-27 18:47:14] 2025-07-27 16:46:41,892 | INFO     | could have reported an average CPU frequency of 2694 MHz (10 samples)
[2025-07-27 18:47:14] 2025-07-27 16:46:41,892 | INFO     | ..............................
[2025-07-27 18:47:14] 2025-07-27 16:46:41,892 | INFO     | . Timing measurements:
[2025-07-27 18:47:14] 2025-07-27 16:46:41,893 | INFO     | . get job = 0 s
[2025-07-27 18:47:14] 2025-07-27 16:46:41,893 | INFO     | . initial setup = 1 s
[2025-07-27 18:47:14] 2025-07-27 16:46:41,893 | INFO     | . payload setup = 9 s
[2025-07-27 18:47:14] 2025-07-27 16:46:41,893 | INFO     | . stage-in = 0 s
[2025-07-27 18:47:14] 2025-07-27 16:46:41,893 | INFO     | . payload execution = 11715 s
[2025-07-27 18:47:14] 2025-07-27 16:46:41,893 | INFO     | . stage-out = 1 s
[2025-07-27 18:47:14] 2025-07-27 16:46:41,893 | INFO     | . log creation = 0 s
[2025-07-27 18:47:14] 2025-07-27 16:46:41,893 | INFO     | ..............................
[2025-07-27 18:47:14] 2025-07-27 16:46:42,028 | INFO     | 
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | job summary report
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | --------------------------------------------------
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | PanDA job id: 6744917049
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | task id: 45743349
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | errors: (none)
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | pilot state: finished 
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | transexitcode: 0
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | exeerrorcode: 0
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | exeerrordiag: 
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | exitcode: 0
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | exitmsg: OK
[2025-07-27 18:47:14] 2025-07-27 16:46:42,029 | INFO     | cpuconsumptiontime: 44742 s
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | nevents: 400
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | neventsw: 0
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | pid: 2129916
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | pgrp: 2129916
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | corecount: 4
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | event service: False
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | sizes: {0: 2397481, 7: 2397743, 11: 2397771, 11728: 2427800, 11731: 2436820, 11734: 2436876, 11740: 2437198}
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | --------------------------------------------------
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | 
[2025-07-27 18:47:14] 2025-07-27 16:46:42,030 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-07-27 18:47:14] 2025-07-27 16:46:42,059 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,060 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,060 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,060 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,060 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,060 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,060 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,060 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,060 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,061 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:47:14] 2025-07-27 16:46:42,062 | INFO     | job 6744917049 has completed (purged errors)
[2025-07-27 18:47:14] 2025-07-27 16:46:42,062 | INFO     | overall cleanup function is called
[2025-07-27 18:47:14] 2025-07-27 16:46:43,070 | INFO     | --- collectZombieJob: --- 10, [2129916]
[2025-07-27 18:47:14] 2025-07-27 16:46:43,071 | INFO     | zombie collector waiting for pid 2129916
[2025-07-27 18:47:14] 2025-07-27 16:46:43,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:47:14] 2025-07-27 16:46:43,071 | INFO     | collected zombie processes
[2025-07-27 18:47:14] 2025-07-27 16:46:43,071 | INFO     | will attempt to kill all subprocesses of pid=2129916
[2025-07-27 18:47:14] 2025-07-27 16:46:43,732 | INFO     | process IDs to be killed: [2129916] (in reverse order)
[2025-07-27 18:47:14] 2025-07-27 16:46:43,979 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:47:14] 2025-07-27 16:46:43,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:47:14] 2025-07-27 16:46:44,004 | INFO     | did not find any defunct processes belonging to 2129916
[2025-07-27 18:47:14] 2025-07-27 16:46:44,023 | INFO     | did not find any defunct processes belonging to 2129916
[2025-07-27 18:47:14] 2025-07-27 16:46:44,024 | INFO     | ready for new job
[2025-07-27 18:47:14] 2025-07-27 16:46:44,024 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:47:14] 2025-07-27 16:46:44,026 | INFO     | ***************************************
[2025-07-27 18:47:14] 2025-07-27 16:46:44,026 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:47:14] 2025-07-27 16:46:44,026 | INFO     | ***************************************
[2025-07-27 18:47:14] 2025-07-27 16:46:44,026 | INFO     | 
[2025-07-27 18:47:14] 2025-07-27 16:46:44,035 | INFO     | architecture information:
[2025-07-27 18:47:14] 2025-07-27 16:46:44,035 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:47:14] 2025-07-27 16:46:44,060 | INFO     | cat /etc/os-release:
[2025-07-27 18:47:14] NAME="CentOS Linux"
[2025-07-27 18:47:14] VERSION="7 (Core)"
[2025-07-27 18:47:14] ID="centos"
[2025-07-27 18:47:14] ID_LIKE="rhel fedora"
[2025-07-27 18:47:14] VERSION_ID="7"
[2025-07-27 18:47:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:47:14] ANSI_COLOR="0;31"
[2025-07-27 18:47:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:47:14] HOME_URL="https://www.centos.org/"
[2025-07-27 18:47:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:47:14] 
[2025-07-27 18:47:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:47:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:47:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:47:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:47:14] 
[2025-07-27 18:47:14] 2025-07-27 16:46:44,060 | INFO     | ***************************************
[2025-07-27 18:47:14] 2025-07-27 16:46:44,563 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-07-27 18:47:14] 2025-07-27 16:46:44,584 | INFO     | sufficient remaining disk space (3215126953984 B)
[2025-07-27 18:47:14] 2025-07-27 16:46:44,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:47:14] 2025-07-27 16:46:44,585 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:47:14] 2025-07-27 16:46:44,585 | INFO     | update_server=False
[2025-07-27 18:47:14] 2025-07-27 16:46:44,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:47:14] 2025-07-27 16:46:44,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:47:14] 2025-07-27 16:46:44,586 | INFO     | aborting loop
[2025-07-27 18:47:14] 2025-07-27 16:46:45,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:47:14] 2025-07-27 16:46:45,457 | INFO     | all data control threads have been joined
[2025-07-27 18:47:14] 2025-07-27 16:46:45,509 | INFO     | all payload control threads have been joined
[2025-07-27 18:47:14] 2025-07-27 16:46:45,589 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:45,591 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:45,629 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:45,707 | INFO     | all job control threads have been joined
[2025-07-27 18:47:14] 2025-07-27 16:46:45,826 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:45,933 | INFO     | [job] validate thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:46,071 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:46,157 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:46,185 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:46,228 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:46,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:47:14] 2025-07-27 16:46:46,462 | INFO     | [data] control thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:46,513 | INFO     | [payload] control thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:46,713 | INFO     | [job] control thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:46,994 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:47,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:47:14] 2025-07-27 16:46:47,314 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:48,009 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:50,252 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:47:14] 2025-07-27 16:46:50,980 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22889856890688)>', '<ExcThread(monitor, started 22889420019456)>']
[2025-07-27 18:47:14] 2025-07-27 16:46:56,005 | INFO     | all workflow threads have been joined
[2025-07-27 18:47:14] 2025-07-27 16:46:56,006 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:47:14] 2025-07-27 16:46:56,006 | INFO     | traces error code: 0
[2025-07-27 18:47:14] 2025-07-27 16:46:56,006 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:47:14] 2025-07-27 16:47:14,203 | INFO     | PID=2103241 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:47:14] 2025-07-27 16:47:14,203 | INFO     | .. there are 20 such processes running
[2025-07-27 18:47:14] 2025-07-27 16:47:14,204 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:47:14] 2025-07-27 16:47:14,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:47:14] 2025-07-27 16:47:14,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:47:14] 2025-07-27 16:47:14,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:47:14] 2025-07-27 16:47:14,204 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 18:47:14] 2025-07-27 16:47:14,204 | INFO     | [monitor] control thread has ended
[2025-07-27 18:47:14] 2025-07-27 16:47:14,431 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:47:14] 2025-07-27 16:47:14,435 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:47:14] 2025-07-27 16:47:14,438 [wrapper] pilotpid: 2103241
[2025-07-27 18:47:14] 2025-07-27 16:47:14,443 [wrapper] Pilot exit status: 0
[2025-07-27 18:47:14] 2025-07-27 16:47:14,461 [wrapper] pandaids: 6744917049 6744917049
[2025-07-27 18:47:14] 2025-07-27 16:47:14,605 [wrapper] cleanup supervisor_pilot 2935925 2103244
[2025-07-27 18:47:14] 2025-07-27 16:47:14,609 [wrapper] Test setup, not cleaning
[2025-07-27 18:47:14] 2025-07-27 16:47:14,613 [wrapper] apfmon messages muted
[2025-07-27 18:47:14] 2025-07-27 16:47:14,617 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:47:14] 2025-07-27 16:47:14,621 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:47:14]  *** Error codes and diagnostics ***
[2025-07-27 18:47:14]     "exeErrorCode": 0,
[2025-07-27 18:47:14]     "exeErrorDiag": "",
[2025-07-27 18:47:14]     "pilotErrorCode": 0,
[2025-07-27 18:47:14]     "pilotErrorDiag": "",
[2025-07-27 18:47:14]  *** Listing of results directory ***
[2025-07-27 18:47:14] total 661424
[2025-07-27 18:47:14] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-27 18:47:14] -rwx------ 1 boinc boinc     36292 Jul 24 20:24 runpilot2-wrapper.sh
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc      5112 Jul 24 20:26 queuedata.json
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc    530466 Jul 24 20:26 pilot3.tar.gz
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc       100 Jul 27 14:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:47:14] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 14:42 run_atlas
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc       105 Jul 27 14:42 job.xml
[2025-07-27 18:47:14] -rw-r--r-- 3 boinc boinc 227981322 Jul 27 14:42 EVNT.45743347._000277.pool.root.1
[2025-07-27 18:47:14] -rw-r--r-- 3 boinc boinc 227981322 Jul 27 14:42 ATLAS.root_0
[2025-07-27 18:47:14] -rw-r--r-- 2 boinc boinc     15095 Jul 27 14:42 start_atlas.sh
[2025-07-27 18:47:14] drwxrwx--x 2 boinc boinc      4096 Jul 27 14:42 shared
[2025-07-27 18:47:14] -rw-r--r-- 2 boinc boinc    542893 Jul 27 14:42 input.tar.gz
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc         0 Jul 27 14:42 boinc_lockfile
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc      2561 Jul 27 15:30 pandaJob.out
[2025-07-27 18:47:14] -rw------- 1 boinc boinc    980117 Jul 27 15:30 agis_schedconf.cvmfs.json
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc      6691 Jul 27 15:33 init_data.xml
[2025-07-27 18:47:14] -rw------- 1 boinc boinc 214641757 Jul 27 18:45 HITS.45743349._005148.pool.root.1
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc       530 Jul 27 18:45 boinc_task_state.xml
[2025-07-27 18:47:14] -rw------- 1 boinc boinc      1032 Jul 27 18:46 memory_monitor_summary.json
[2025-07-27 18:47:14] -rw------- 1 boinc boinc        97 Jul 27 18:46 pilot_heartbeat.json
[2025-07-27 18:47:14] -rw------- 1 boinc boinc   1593052 Jul 27 18:46 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:47:14] -rw------- 1 boinc boinc    316143 Jul 27 18:46 log.45743349._005148.job.log.tgz.1
[2025-07-27 18:47:14] -rw------- 1 boinc boinc      7783 Jul 27 18:46 heartbeat.json
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc        27 Jul 27 18:47 wrapper_checkpoint.txt
[2025-07-27 18:47:14] -rw------- 1 boinc boinc       893 Jul 27 18:47 pilotlog.txt
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc      8192 Jul 27 18:47 boinc_mmap_file
[2025-07-27 18:47:14] -rw------- 1 boinc boinc   1089050 Jul 27 18:47 log.45743349._005148.job.log.1
[2025-07-27 18:47:14] -rw------- 1 boinc boinc       357 Jul 27 18:47 output.list
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc       620 Jul 27 18:47 runtime_log
[2025-07-27 18:47:14] -rw------- 1 boinc boinc   1423360 Jul 27 18:47 result.tar.gz
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc      9104 Jul 27 18:47 runtime_log.err
[2025-07-27 18:47:14] -rw------- 1 boinc boinc       791 Jul 27 18:47 rkVMDmqnFz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm50MLDmDVDWNm.diag
[2025-07-27 18:47:14] -rw-r--r-- 1 boinc boinc     22829 Jul 27 18:47 stderr.txt
[2025-07-27 18:47:14] HITS file was successfully produced:
[2025-07-27 18:47:14] -rw------- 1 boinc boinc 214641757 Jul 27 18:45 shared/HITS.pool.root.1
[2025-07-27 18:47:14]  *** Contents of shared directory: ***
[2025-07-27 18:47:14] total 434200
[2025-07-27 18:47:14] -rw-r--r-- 3 boinc boinc 227981322 Jul 27 14:42 ATLAS.root_0
[2025-07-27 18:47:14] -rw-r--r-- 2 boinc boinc     15095 Jul 27 14:42 start_atlas.sh
[2025-07-27 18:47:14] -rw-r--r-- 2 boinc boinc    542893 Jul 27 14:42 input.tar.gz
[2025-07-27 18:47:14] -rw------- 1 boinc boinc 214641757 Jul 27 18:45 HITS.pool.root.1
[2025-07-27 18:47:14] -rw------- 1 boinc boinc   1423360 Jul 27 18:47 result.tar.gz
18:47:16 (2085462): run_atlas exited; CPU time 45387.527658
18:47:16 (2085462): called boinc_finish(0)

</stderr_txt>
]]>

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