Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:51:20 (638046): wrapper (7.7.26015): starting
19:51:20 (638046): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 19:51:20] Arguments: --nthreads 12
[2025-07-24 19:51:20] Threads: 12
[2025-07-24 19:51:20] Checking for CVMFS
[2025-07-24 19:51:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 19:51:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 19:51:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 19:51:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 19:51:21] 2.13.1.0 4811 7172 145580 148719 1 438 21570888 40960000 9446 16776704 0 7013064 99.651 7381552 31684 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 19:51:21] CVMFS is ok
[2025-07-24 19:51:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 19:51:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 19:51:21] Further information can be found at the LHC@home message board.
[2025-07-24 19:51:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 19:51:21] Checking for apptainer binary...
[2025-07-24 19:51:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 19:51:21] Running /usr/bin/apptainer --version
[2025-07-24 19:51:21] apptainer version 1.4.1-1.el9
[2025-07-24 19:51:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 19:51:22] c-211-11.aglt2.org
[2025-07-24 19:51:22] apptainer works
[2025-07-24 19:51:22] Set ATHENA_PROC_NUMBER=12
[2025-07-24 19:51:22] Set ATHENA_CORE_NUMBER=12
[2025-07-24 19:51:22] Starting ATLAS job with PandaID=6744927878
[2025-07-24 19:51:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:31:37 (881487): wrapper (7.7.26015): starting
23:31:37 (881487): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 23:31:37] Arguments: --nthreads 12
[2025-07-24 23:31:37] Threads: 12
[2025-07-24 23:31:37] This job has been restarted, cleaning up previous attempt
[2025-07-24 23:31:37] Checking for CVMFS
[2025-07-24 23:31:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 23:31:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 23:31:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 23:31:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 23:31:38] 2.13.1.0 4811 7392 143372 148725 1 95 22387961 40960001 7770 16776704 0 7163841 99.647 7568512 31431 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-24 23:31:38] CVMFS is ok
[2025-07-24 23:31:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 23:31:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 23:31:38] Further information can be found at the LHC@home message board.
[2025-07-24 23:31:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 23:31:38] Checking for apptainer binary...
[2025-07-24 23:31:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 23:31:38] Running /usr/bin/apptainer --version
[2025-07-24 23:31:38] apptainer version 1.4.1-1.el9
[2025-07-24 23:31:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 23:31:38] c-211-11.aglt2.org
[2025-07-24 23:31:38] apptainer works
[2025-07-24 23:31:38] Set ATHENA_PROC_NUMBER=12
[2025-07-24 23:31:38] Set ATHENA_CORE_NUMBER=12
[2025-07-24 23:31:38] Starting ATLAS job with PandaID=6744927878
[2025-07-24 23:31:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 04:14:29]  *** The last 200 lines of the pilot log: ***
[2025-07-25 04:14:29] 2025-07-25 08:13:52,641 | INFO     | monitor loop #1033: job 0:6744927878 is in state 'finished'
[2025-07-25 04:14:29] 2025-07-25 08:13:52,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,145 | INFO     | monitor loop #1034: job 0:6744927878 is in state 'finished'
[2025-07-25 04:14:29] 2025-07-25 08:13:55,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,481 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 04:14:29] 2025-07-25 08:13:55,489 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2611.3296875
[2025-07-25 04:14:29] 2025-07-25 08:13:55,498 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744927878/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,499 | INFO     | extracted standard info from prmon json
[2025-07-25 04:14:29] 2025-07-25 08:13:55,499 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 04:14:29] 2025-07-25 08:13:55,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 04:14:29] 2025-07-25 08:13:55,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 04:14:29] 2025-07-25 08:13:55,500 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 04:14:29] 2025-07-25 08:13:55,506 | INFO     | fitting pss+swap vs Time
[2025-07-25 04:14:29] 2025-07-25 08:13:55,507 | INFO     | sum of square deviations: 6590681742.101101
[2025-07-25 04:14:29] 2025-07-25 08:13:55,509 | INFO     | sum of deviations: -21185155724.682335
[2025-07-25 04:14:29] 2025-07-25 08:13:55,510 | INFO     | mean x: 1753422759.6606498
[2025-07-25 04:14:29] 2025-07-25 08:13:55,510 | INFO     | mean y: 2754469.7906137183
[2025-07-25 04:14:29] 2025-07-25 08:13:55,510 | INFO     | -- intersect: 5638974768.113022
[2025-07-25 04:14:29] 2025-07-25 08:13:55,510 | INFO     | intersect: 5638974768.113022
[2025-07-25 04:14:29] 2025-07-25 08:13:55,511 | INFO     | chi2: 1.7633618196283676
[2025-07-25 04:14:29] 2025-07-25 08:13:55,511 | INFO     | sum of square deviations: 6240256564.87865
[2025-07-25 04:14:29] 2025-07-25 08:13:55,514 | INFO     | sum of deviations: -20792452196.003666
[2025-07-25 04:14:29] 2025-07-25 08:13:55,514 | INFO     | mean x: 1753422607.172794
[2025-07-25 04:14:29] 2025-07-25 08:13:55,514 | INFO     | mean y: 2754640.7022058824
[2025-07-25 04:14:29] 2025-07-25 08:13:55,514 | INFO     | -- intersect: 5845135536.42126
[2025-07-25 04:14:29] 2025-07-25 08:13:55,514 | INFO     | intersect: 5845135536.42126
[2025-07-25 04:14:29] 2025-07-25 08:13:55,515 | INFO     | chi2: 1.7623694655130548
[2025-07-25 04:14:29] 2025-07-25 08:13:55,515 | INFO     | current chi2=1.7623694655130548 (change=0.0562762618690402 %)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,515 | INFO     | right removable region: 271
[2025-07-25 04:14:29] 2025-07-25 08:13:55,515 | INFO     | sum of square deviations: 6240144934.878648
[2025-07-25 04:14:29] 2025-07-25 08:13:55,518 | INFO     | sum of deviations: -67991031213.45223
[2025-07-25 04:14:29] 2025-07-25 08:13:55,518 | INFO     | mean x: 1753422912.172794
[2025-07-25 04:14:29] 2025-07-25 08:13:55,518 | INFO     | mean y: 2774676.3713235296
[2025-07-25 04:14:29] 2025-07-25 08:13:55,518 | INFO     | -- intersect: 19107624514.965843
[2025-07-25 04:14:29] 2025-07-25 08:13:55,518 | INFO     | intersect: 19107624514.965843
[2025-07-25 04:14:29] 2025-07-25 08:13:55,519 | INFO     | chi2: 0.3149373763672857
[2025-07-25 04:14:29] 2025-07-25 08:13:55,519 | INFO     | current chi2=0.3149373763672857 (change=82.1399458204409 %)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,519 | INFO     | sum of square deviations: 5902259527.573065
[2025-07-25 04:14:29] 2025-07-25 08:13:55,522 | INFO     | sum of deviations: -61851272842.056206
[2025-07-25 04:14:29] 2025-07-25 08:13:55,522 | INFO     | mean x: 1753423064.6853933
[2025-07-25 04:14:29] 2025-07-25 08:13:55,522 | INFO     | mean y: 2771876.344569288
[2025-07-25 04:14:29] 2025-07-25 08:13:55,522 | INFO     | -- intersect: 18377336375.71427
[2025-07-25 04:14:29] 2025-07-25 08:13:55,522 | INFO     | intersect: 18377336375.71427
[2025-07-25 04:14:29] 2025-07-25 08:13:55,523 | INFO     | chi2: 0.2952148541512924
[2025-07-25 04:14:29] 2025-07-25 08:13:55,523 | INFO     | current chi2=0.2952148541512924 (change=6.26236315406163 %)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,523 | INFO     | left removable region: 20
[2025-07-25 04:14:29] 2025-07-25 08:13:55,523 | INFO     | sum of square deviations: 4903532507.34662
[2025-07-25 04:14:29] 2025-07-25 08:13:55,525 | INFO     | sum of deviations: -36094205777.34261
[2025-07-25 04:14:29] 2025-07-25 08:13:55,525 | INFO     | mean x: 1753423186.7131474
[2025-07-25 04:14:29] 2025-07-25 08:13:55,525 | INFO     | mean y: 2760245.800796813
[2025-07-25 04:14:29] 2025-07-25 08:13:55,525 | INFO     | -- intersect: 12909459084.070467
[2025-07-25 04:14:29] 2025-07-25 08:13:55,525 | INFO     | intersect: 12909459084.070467
[2025-07-25 04:14:29] 2025-07-25 08:13:55,525 | INFO     | chi2: 0.22409596275080557
[2025-07-25 04:14:29] 2025-07-25 08:13:55,525 | INFO     | -- intersect: 12909459084.070467
[2025-07-25 04:14:29] 2025-07-25 08:13:55,526 | INFO     | current memory leak: -7.36 B/s (using 251 data points, chi2=0.22)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,526 | INFO     | could have reported an average CPU frequency of 2482 MHz (13 samples)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,526 | INFO     | ..............................
[2025-07-25 04:14:29] 2025-07-25 08:13:55,526 | INFO     | . Timing measurements:
[2025-07-25 04:14:29] 2025-07-25 08:13:55,526 | INFO     | . get job = 0 s
[2025-07-25 04:14:29] 2025-07-25 08:13:55,526 | INFO     | . initial setup = 2 s
[2025-07-25 04:14:29] 2025-07-25 08:13:55,526 | INFO     | . payload setup = 8 s
[2025-07-25 04:14:29] 2025-07-25 08:13:55,526 | INFO     | . stage-in = 0 s
[2025-07-25 04:14:29] 2025-07-25 08:13:55,527 | INFO     | . payload execution = 16883 s
[2025-07-25 04:14:29] 2025-07-25 08:13:55,527 | INFO     | . stage-out = 2 s
[2025-07-25 04:14:29] 2025-07-25 08:13:55,527 | INFO     | . log creation = 0 s
[2025-07-25 04:14:29] 2025-07-25 08:13:55,527 | INFO     | ..............................
[2025-07-25 04:14:29] 2025-07-25 08:13:55,914 | INFO     | 
[2025-07-25 04:14:29] 2025-07-25 08:13:55,914 | INFO     | job summary report
[2025-07-25 04:14:29] 2025-07-25 08:13:55,914 | INFO     | --------------------------------------------------
[2025-07-25 04:14:29] 2025-07-25 08:13:55,915 | INFO     | PanDA job id: 6744927878
[2025-07-25 04:14:29] 2025-07-25 08:13:55,915 | INFO     | task id: 45743349
[2025-07-25 04:14:29] 2025-07-25 08:13:55,915 | INFO     | errors: (none)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,915 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 04:14:29] 2025-07-25 08:13:55,915 | INFO     | pilot state: finished 
[2025-07-25 04:14:29] 2025-07-25 08:13:55,915 | INFO     | transexitcode: 0
[2025-07-25 04:14:29] 2025-07-25 08:13:55,915 | INFO     | exeerrorcode: 0
[2025-07-25 04:14:29] 2025-07-25 08:13:55,915 | INFO     | exeerrordiag: 
[2025-07-25 04:14:29] 2025-07-25 08:13:55,916 | INFO     | exitcode: 0
[2025-07-25 04:14:29] 2025-07-25 08:13:55,916 | INFO     | exitmsg: OK
[2025-07-25 04:14:29] 2025-07-25 08:13:55,916 | INFO     | cpuconsumptiontime: 68255 s
[2025-07-25 04:14:29] 2025-07-25 08:13:55,916 | INFO     | nevents: 400
[2025-07-25 04:14:29] 2025-07-25 08:13:55,916 | INFO     | neventsw: 0
[2025-07-25 04:14:29] 2025-07-25 08:13:55,916 | INFO     | pid: 891712
[2025-07-25 04:14:29] 2025-07-25 08:13:55,916 | INFO     | pgrp: 891712
[2025-07-25 04:14:29] 2025-07-25 08:13:55,916 | INFO     | corecount: 12
[2025-07-25 04:14:29] 2025-07-25 08:13:55,916 | INFO     | event service: False
[2025-07-25 04:14:29] 2025-07-25 08:13:55,917 | INFO     | sizes: {0: 2397469, 1: 2397469, 5: 2397759, 12: 2397815, 16895: 2429611, 16896: 2429610, 16898: 2438792, 16901: 2438848, 16908: 2439042}
[2025-07-25 04:14:29] 2025-07-25 08:13:55,917 | INFO     | --------------------------------------------------
[2025-07-25 04:14:29] 2025-07-25 08:13:55,917 | INFO     | 
[2025-07-25 04:14:29] 2025-07-25 08:13:55,917 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 04:14:29] 2025-07-25 08:13:55,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,939 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,940 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 04:14:29] 2025-07-25 08:13:55,941 | INFO     | job 6744927878 has completed (purged errors)
[2025-07-25 04:14:29] 2025-07-25 08:13:55,941 | INFO     | overall cleanup function is called
[2025-07-25 04:14:29] 2025-07-25 08:13:56,947 | INFO     | --- collectZombieJob: --- 10, [891712]
[2025-07-25 04:14:29] 2025-07-25 08:13:56,947 | INFO     | zombie collector waiting for pid 891712
[2025-07-25 04:14:29] 2025-07-25 08:13:56,971 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 04:14:29] 2025-07-25 08:13:56,971 | INFO     | collected zombie processes
[2025-07-25 04:14:29] 2025-07-25 08:13:56,971 | INFO     | will attempt to kill all subprocesses of pid=891712
[2025-07-25 04:14:29] 2025-07-25 08:13:57,225 | INFO     | process IDs to be killed: [891712] (in reverse order)
[2025-07-25 04:14:29] 2025-07-25 08:13:57,310 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 04:14:29] 2025-07-25 08:13:57,310 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 04:14:29] 2025-07-25 08:13:57,319 | INFO     | did not find any defunct processes belonging to 891712
[2025-07-25 04:14:29] 2025-07-25 08:13:57,328 | INFO     | did not find any defunct processes belonging to 891712
[2025-07-25 04:14:29] 2025-07-25 08:13:57,328 | INFO     | ready for new job
[2025-07-25 04:14:29] 2025-07-25 08:13:57,328 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 04:14:29] 2025-07-25 08:13:57,330 | INFO     | ***************************************
[2025-07-25 04:14:29] 2025-07-25 08:13:57,330 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 04:14:29] 2025-07-25 08:13:57,331 | INFO     | ***************************************
[2025-07-25 04:14:29] 2025-07-25 08:13:57,331 | INFO     | 
[2025-07-25 04:14:29] 2025-07-25 08:13:57,334 | INFO     | architecture information:
[2025-07-25 04:14:29] 2025-07-25 08:13:57,334 | INFO     | executing command: cat /etc/os-release
[2025-07-25 04:14:29] 2025-07-25 08:13:57,350 | INFO     | cat /etc/os-release:
[2025-07-25 04:14:29] NAME="CentOS Linux"
[2025-07-25 04:14:29] VERSION="7 (Core)"
[2025-07-25 04:14:29] ID="centos"
[2025-07-25 04:14:29] ID_LIKE="rhel fedora"
[2025-07-25 04:14:29] VERSION_ID="7"
[2025-07-25 04:14:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 04:14:29] ANSI_COLOR="0;31"
[2025-07-25 04:14:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 04:14:29] HOME_URL="https://www.centos.org/"
[2025-07-25 04:14:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 04:14:29] 
[2025-07-25 04:14:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 04:14:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 04:14:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 04:14:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 04:14:29] 
[2025-07-25 04:14:29] 2025-07-25 08:13:57,350 | INFO     | ***************************************
[2025-07-25 04:14:29] 2025-07-25 08:13:57,853 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 04:14:29] 2025-07-25 08:13:57,871 | INFO     | sufficient remaining disk space (64693993472 B)
[2025-07-25 04:14:29] 2025-07-25 08:13:57,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 04:14:29] 2025-07-25 08:13:57,871 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 04:14:29] 2025-07-25 08:13:57,871 | INFO     | update_server=False
[2025-07-25 04:14:29] 2025-07-25 08:13:57,871 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 04:14:29] 2025-07-25 08:13:58,072 | INFO     | all job control threads have been joined
[2025-07-25 04:14:29] 2025-07-25 08:13:58,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 04:14:29] 2025-07-25 08:13:58,654 | INFO     | aborting loop
[2025-07-25 04:14:29] 2025-07-25 08:13:58,694 | INFO     | all data control threads have been joined
[2025-07-25 04:14:29] 2025-07-25 08:13:58,710 | INFO     | all payload control threads have been joined
[2025-07-25 04:14:29] 2025-07-25 08:13:58,745 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 04:14:29] 2025-07-25 08:13:58,876 | INFO     | [job] retrieve thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,060 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,071 | INFO     | [job] validate thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,077 | INFO     | [job] control thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 04:14:29] 2025-07-25 08:13:59,659 | INFO     | [job] job monitor thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,699 | INFO     | [data] control thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,715 | INFO     | [payload] control thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,722 | INFO     | [payload] failed_post thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,733 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,792 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:13:59,863 | INFO     | [payload] validate_post thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:14:00,198 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:14:00,292 | INFO     | [data] copytool_in thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:14:00,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 04:14:29] 2025-07-25 08:14:00,750 | INFO     | [data] copytool_out thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:14:01,642 | INFO     | [job] queue monitor thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:14:03,155 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 04:14:29] 2025-07-25 08:14:04,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140429806028608)>', '<ExcThread(monitor, started 140429165053696)>']
[2025-07-25 04:14:29] 2025-07-25 08:14:09,290 | INFO     | all workflow threads have been joined
[2025-07-25 04:14:29] 2025-07-25 08:14:09,290 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 04:14:29] 2025-07-25 08:14:09,291 | INFO     | traces error code: 0
[2025-07-25 04:14:29] 2025-07-25 08:14:09,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 04:14:29] 2025-07-25 08:14:29,284 | INFO     | PID=885097 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 04:14:29] 2025-07-25 08:14:29,285 | INFO     | .. there are 7 such processes running
[2025-07-25 04:14:29] 2025-07-25 08:14:29,285 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 04:14:29] 2025-07-25 08:14:29,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 04:14:29] 2025-07-25 08:14:29,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 04:14:29] 2025-07-25 08:14:29,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 04:14:29] 2025-07-25 08:14:29,286 | INFO     | [monitor] control thread has ended
[2025-07-25 04:14:29] 2025-07-25 08:14:29,437 [wrapper] ==== pilot stdout END ====
[2025-07-25 04:14:29] 2025-07-25 08:14:29,440 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 04:14:29] 2025-07-25 08:14:29,443 [wrapper] pilotpid: 885097
[2025-07-25 04:14:29] 2025-07-25 08:14:29,446 [wrapper] Pilot exit status: 0
[2025-07-25 04:14:29] 2025-07-25 08:14:29,458 [wrapper] pandaids: 6744927878 6744927878
[2025-07-25 04:14:29] 2025-07-25 08:14:29,507 [wrapper] cleanup supervisor_pilot 1175513 885098
[2025-07-25 04:14:29] 2025-07-25 08:14:29,510 [wrapper] Test setup, not cleaning
[2025-07-25 04:14:29] 2025-07-25 08:14:29,513 [wrapper] apfmon messages muted
[2025-07-25 04:14:29] 2025-07-25 08:14:29,516 [wrapper] ==== wrapper stdout END ====
[2025-07-25 04:14:29] 2025-07-25 08:14:29,519 [wrapper] ==== wrapper stderr END ====
[2025-07-25 04:14:29]  *** Error codes and diagnostics ***
[2025-07-25 04:14:29]     "exeErrorCode": 0,
[2025-07-25 04:14:29]     "exeErrorDiag": "",
[2025-07-25 04:14:29]     "pilotErrorCode": 0,
[2025-07-25 04:14:29]     "pilotErrorDiag": "",
[2025-07-25 04:14:29]  *** Listing of results directory ***
[2025-07-25 04:14:29] total 501168
[2025-07-25 04:14:29] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 16:02 pilot3.tar.gz
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 16:05 queuedata.json
[2025-07-25 04:14:29] -rwx------. 1 boincer umatlas     36292 Jul 24 16:06 runpilot2-wrapper.sh
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas       100 Jul 24 19:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 04:14:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 19:51 run_atlas
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas       105 Jul 24 19:51 job.xml
[2025-07-25 04:14:29] -rw-r--r--. 3 boincer umatlas 145527131 Jul 24 19:51 EVNT.45743347._000457.pool.root.1
[2025-07-25 04:14:29] -rw-r--r--. 3 boincer umatlas 145527131 Jul 24 19:51 ATLAS.root_0
[2025-07-25 04:14:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 19:51 start_atlas.sh
[2025-07-25 04:14:29] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 19:51 shared
[2025-07-25 04:14:29] -rw-r--r--. 2 boincer umatlas    542878 Jul 24 19:51 input.tar.gz
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas         0 Jul 24 19:51 boinc_lockfile
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas      2560 Jul 24 23:31 pandaJob.out
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas    979709 Jul 24 23:31 agis_schedconf.cvmfs.json
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas      6614 Jul 25 04:10 init_data.xml
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas 214570773 Jul 25 04:13 HITS.45743349._008629.pool.root.1
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas       532 Jul 25 04:13 boinc_task_state.xml
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas      1040 Jul 25 04:13 memory_monitor_summary.json
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas        96 Jul 25 04:13 pilot_heartbeat.json
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas   1593052 Jul 25 04:13 agis_ddmendpoints.agis.ALL.json
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas    468989 Jul 25 04:13 log.45743349._008629.job.log.tgz.1
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas      7833 Jul 25 04:13 heartbeat.json
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas        29 Jul 25 04:14 wrapper_checkpoint.txt
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 04:14 boinc_mmap_file
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas       821 Jul 25 04:14 pilotlog.txt
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas   1377343 Jul 25 04:14 log.45743349._008629.job.log.1
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas       357 Jul 25 04:14 output.list
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas       620 Jul 25 04:14 runtime_log
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas   1863680 Jul 25 04:14 result.tar.gz
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas       782 Jul 25 04:14 w9MMDmmNHz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm3gxKDmoTHhSm.diag
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas      8748 Jul 25 04:14 runtime_log.err
[2025-07-25 04:14:29] -rw-r--r--. 1 boincer umatlas     23404 Jul 25 04:14 stderr.txt
[2025-07-25 04:14:29] HITS file was successfully produced:
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas 214570773 Jul 25 04:13 shared/HITS.pool.root.1
[2025-07-25 04:14:29]  *** Contents of shared directory: ***
[2025-07-25 04:14:29] total 354036
[2025-07-25 04:14:29] -rw-r--r--. 3 boincer umatlas 145527131 Jul 24 19:51 ATLAS.root_0
[2025-07-25 04:14:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 19:51 start_atlas.sh
[2025-07-25 04:14:29] -rw-r--r--. 2 boincer umatlas    542878 Jul 24 19:51 input.tar.gz
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas 214570773 Jul 25 04:13 HITS.pool.root.1
[2025-07-25 04:14:29] -rw-------. 1 boincer umatlas   1863680 Jul 25 04:14 result.tar.gz
04:14:30 (881487): run_atlas exited; CPU time 68667.526381
04:14:30 (881487): called boinc_finish(0)

</stderr_txt>
]]>

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