Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:29:11 (1159142): wrapper (7.7.26015): starting
20:29:11 (1159142): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 20:29:11] Arguments: --nthreads 8
[2025-07-24 20:29:11] Threads: 8
[2025-07-24 20:29:11] Checking for CVMFS
[2025-07-24 20:29:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 20:29:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 20:29:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 20:29:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 20:29:12] 2.12.6.0 1904412 14781 367020 148720 0 173 20279073 32503809 20508 16776704 0 87282217 99.504 130133021 18521 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-24 20:29:12] CVMFS is ok
[2025-07-24 20:29:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 20:29:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 20:29:12] Further information can be found at the LHC@home message board.
[2025-07-24 20:29:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 20:29:12] Checking for apptainer binary...
[2025-07-24 20:29:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 20:29:12] Running /usr/bin/apptainer --version
[2025-07-24 20:29:12] apptainer version 1.4.1-1.el9
[2025-07-24 20:29:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 20:29:12] c7-7-36.aglt2.org
[2025-07-24 20:29:12] apptainer works
[2025-07-24 20:29:12] Set ATHENA_PROC_NUMBER=8
[2025-07-24 20:29:12] Set ATHENA_CORE_NUMBER=8
[2025-07-24 20:29:12] Starting ATLAS job with PandaID=6744927488
[2025-07-24 20:29:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 22:03:14]  *** The last 200 lines of the pilot log: ***
[2025-07-24 22:03:14]  mtime=0
[2025-07-24 22:03:14]  protocol_id=None
[2025-07-24 22:03:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-24 22:03:14]  replicas=None
[2025-07-24 22:03:14]  scope=mc23_13p6TeV
[2025-07-24 22:03:14]  status=None
[2025-07-24 22:03:14]  status_code=0
[2025-07-24 22:03:14]  storage_token=
[2025-07-24 22:03:14]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6744927488/log.45743349._008270.job.log.tgz.1
[2025-07-24 22:03:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/37/log.45743349._008270.job.log.tgz.1
[2025-07-24 22:03:14]  workdir=None
[2025-07-24 22:03:14] ]
[2025-07-24 22:03:14] 2025-07-25 02:02:32,916 | INFO     | transferring file log.45743349._008270.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6744927488/log.45743349._008270.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-24 22:03:14] 2025-07-25 02:02:32,917 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6744927488/log.45743349._008270.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._008270.job
[2025-07-24 22:03:14] 2025-07-25 02:02:32,942 | INFO     | adding to output.list: log.45743349._008270.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/37/log.45743349._008270.job.log.tg
[2025-07-24 22:03:14] 2025-07-25 02:02:32,943 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-24 22:03:14] 2025-07-25 02:02:32,944 | INFO     | summary of transferred files:
[2025-07-24 22:03:14] 2025-07-25 02:02:32,944 | INFO     |  -- lfn=log.45743349._008270.job.log.tgz.1, status_code=0, status=transferred
[2025-07-24 22:03:14] 2025-07-25 02:02:32,944 | INFO     | stage-out finished correctly
[2025-07-24 22:03:14] 2025-07-25 02:02:33,395 | INFO     | monitor loop #376: job 0:6744927488 is in state 'finished'
[2025-07-24 22:03:14] 2025-07-25 02:02:33,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 22:03:14] 2025-07-25 02:02:34,182 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-24 22:03:14] 2025-07-25 02:02:35,212 | INFO     | job 6744927488 has state=finished
[2025-07-24 22:03:14] 2025-07-25 02:02:35,213 | INFO     | preparing for final server update for job 6744927488 in state='finished'
[2025-07-24 22:03:14] 2025-07-25 02:02:35,213 | INFO     | this job has now completed (state=finished)
[2025-07-24 22:03:14] 2025-07-25 02:02:35,213 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-24 22:03:14] 2025-07-25 02:02:35,213 | INFO     | log transfer has been attempted: DONE
[2025-07-24 22:03:14] 2025-07-25 02:02:35,213 | INFO     | job 6744927488 has finished - writing final server update
[2025-07-24 22:03:14] 2025-07-25 02:02:35,214 | INFO     | total number of processed events: 400 (read)
[2025-07-24 22:03:14] 2025-07-25 02:02:35,214 | INFO     | executing command: lscpu
[2025-07-24 22:03:14] 2025-07-25 02:02:35,303 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 22:03:14] 2025-07-25 02:02:35,902 | INFO     | monitor loop #377: job 0:6744927488 is in state 'finished'
[2025-07-24 22:03:14] 2025-07-25 02:02:35,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 22:03:14] 2025-07-25 02:02:37,108 | INFO     | PID=1163266 has CPU usage=12.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-24 22:03:14] 2025-07-25 02:02:37,108 | INFO     | .. there are 20 such processes running
[2025-07-24 22:03:14] 2025-07-25 02:02:38,418 | INFO     | monitor loop #378: job 0:6744927488 is in state 'finished'
[2025-07-24 22:03:14] 2025-07-25 02:02:38,419 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 22:03:14] 2025-07-25 02:02:40,134 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 22:03:14] 2025-07-25 02:02:40,148 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2953.320322916668
[2025-07-24 22:03:14] 2025-07-25 02:02:40,227 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6744927488/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 22:03:14] 2025-07-25 02:02:40,229 | INFO     | extracted standard info from prmon json
[2025-07-24 22:03:14] 2025-07-25 02:02:40,229 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 22:03:14] 2025-07-25 02:02:40,229 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 22:03:14] 2025-07-25 02:02:40,229 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 22:03:14] 2025-07-25 02:02:40,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 22:03:14] 2025-07-25 02:02:40,231 | INFO     | fitting pss+swap vs Time
[2025-07-24 22:03:14] 2025-07-25 02:02:40,232 | INFO     | sum of square deviations: 190407963.95294112
[2025-07-24 22:03:14] 2025-07-25 02:02:40,232 | INFO     | sum of deviations: -19754622050.917645
[2025-07-24 22:03:14] 2025-07-25 02:02:40,232 | INFO     | mean x: 1753406263.0235295
[2025-07-24 22:03:14] 2025-07-25 02:02:40,232 | INFO     | mean y: 2360554.4588235295
[2025-07-24 22:03:14] 2025-07-25 02:02:40,232 | INFO     | -- intersect: 181916379845.7023
[2025-07-24 22:03:14] 2025-07-25 02:02:40,232 | INFO     | intersect: 181916379845.7023
[2025-07-24 22:03:14] 2025-07-25 02:02:40,233 | INFO     | chi2: 0.17365396305897407
[2025-07-24 22:03:14] 2025-07-25 02:02:40,233 | INFO     | -- intersect: 181916379845.7023
[2025-07-24 22:03:14] 2025-07-25 02:02:40,233 | INFO     | current memory leak: -103.75 B/s (using 85 data points, chi2=0.17)
[2025-07-24 22:03:14] 2025-07-25 02:02:40,233 | INFO     | could have reported an average CPU frequency of 2954 MHz (7 samples)
[2025-07-24 22:03:14] 2025-07-25 02:02:40,233 | INFO     | ..............................
[2025-07-24 22:03:14] 2025-07-25 02:02:40,233 | INFO     | . Timing measurements:
[2025-07-24 22:03:14] 2025-07-25 02:02:40,234 | INFO     | . get job = 0 s
[2025-07-24 22:03:14] 2025-07-25 02:02:40,234 | INFO     | . initial setup = 2 s
[2025-07-24 22:03:14] 2025-07-25 02:02:40,234 | INFO     | . payload setup = 7 s
[2025-07-24 22:03:14] 2025-07-25 02:02:40,234 | INFO     | . stage-in = 0 s
[2025-07-24 22:03:14] 2025-07-25 02:02:40,234 | INFO     | . payload execution = 5558 s
[2025-07-24 22:03:14] 2025-07-25 02:02:40,234 | INFO     | . stage-out = 1 s
[2025-07-24 22:03:14] 2025-07-25 02:02:40,234 | INFO     | . log creation = 0 s
[2025-07-24 22:03:14] 2025-07-25 02:02:40,234 | INFO     | ..............................
[2025-07-24 22:03:14] 2025-07-25 02:02:40,323 | INFO     | 
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | job summary report
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | --------------------------------------------------
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | PanDA job id: 6744927488
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | task id: 45743349
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | errors: (none)
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | pilot state: finished 
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | transexitcode: 0
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | exeerrorcode: 0
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | exeerrordiag: 
[2025-07-24 22:03:14] 2025-07-25 02:02:40,324 | INFO     | exitcode: 0
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | exitmsg: OK
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | cpuconsumptiontime: 38703 s
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | nevents: 400
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | neventsw: 0
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | pid: 1169726
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | pgrp: 1169726
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | corecount: 8
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | event service: False
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | sizes: {0: 2397469, 5: 2397731, 11: 2397787, 5570: 2424380, 5572: 2433378, 5573: 2433434, 5579: 2433756}
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | --------------------------------------------------
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | 
[2025-07-24 22:03:14] 2025-07-25 02:02:40,325 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-24 22:03:14] 2025-07-25 02:02:40,352 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,354 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,354 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 22:03:14] 2025-07-25 02:02:40,354 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,354 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 22:03:14] 2025-07-25 02:02:40,354 | INFO     | job 6744927488 has completed (purged errors)
[2025-07-24 22:03:14] 2025-07-25 02:02:40,354 | INFO     | overall cleanup function is called
[2025-07-24 22:03:14] 2025-07-25 02:02:41,371 | INFO     | --- collectZombieJob: --- 10, [1169726]
[2025-07-24 22:03:14] 2025-07-25 02:02:41,371 | INFO     | zombie collector waiting for pid 1169726
[2025-07-24 22:03:14] 2025-07-25 02:02:41,371 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 22:03:14] 2025-07-25 02:02:41,372 | INFO     | collected zombie processes
[2025-07-24 22:03:14] 2025-07-25 02:02:41,372 | INFO     | will attempt to kill all subprocesses of pid=1169726
[2025-07-24 22:03:14] 2025-07-25 02:02:41,882 | INFO     | process IDs to be killed: [1169726] (in reverse order)
[2025-07-24 22:03:14] 2025-07-25 02:02:42,037 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 22:03:14] 2025-07-25 02:02:42,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 22:03:14] 2025-07-25 02:02:42,060 | INFO     | did not find any defunct processes belonging to 1169726
[2025-07-24 22:03:14] 2025-07-25 02:02:42,082 | INFO     | did not find any defunct processes belonging to 1169726
[2025-07-24 22:03:14] 2025-07-25 02:02:42,083 | INFO     | ready for new job
[2025-07-24 22:03:14] 2025-07-25 02:02:42,083 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 22:03:14] 2025-07-25 02:02:42,085 | INFO     | ***************************************
[2025-07-24 22:03:14] 2025-07-25 02:02:42,085 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 22:03:14] 2025-07-25 02:02:42,085 | INFO     | ***************************************
[2025-07-24 22:03:14] 2025-07-25 02:02:42,085 | INFO     | 
[2025-07-24 22:03:14] 2025-07-25 02:02:42,105 | INFO     | architecture information:
[2025-07-24 22:03:14] 2025-07-25 02:02:42,105 | INFO     | executing command: cat /etc/os-release
[2025-07-24 22:03:14] 2025-07-25 02:02:42,128 | INFO     | cat /etc/os-release:
[2025-07-24 22:03:14] NAME="CentOS Linux"
[2025-07-24 22:03:14] VERSION="7 (Core)"
[2025-07-24 22:03:14] ID="centos"
[2025-07-24 22:03:14] ID_LIKE="rhel fedora"
[2025-07-24 22:03:14] VERSION_ID="7"
[2025-07-24 22:03:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 22:03:14] ANSI_COLOR="0;31"
[2025-07-24 22:03:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 22:03:14] HOME_URL="https://www.centos.org/"
[2025-07-24 22:03:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 22:03:14] 
[2025-07-24 22:03:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 22:03:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 22:03:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 22:03:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 22:03:14] 
[2025-07-24 22:03:14] 2025-07-25 02:02:42,128 | INFO     | ***************************************
[2025-07-24 22:03:14] 2025-07-25 02:02:42,631 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-24 22:03:14] 2025-07-25 02:02:42,665 | INFO     | sufficient remaining disk space (95651102720 B)
[2025-07-24 22:03:14] 2025-07-25 02:02:42,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 22:03:14] 2025-07-25 02:02:42,665 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 22:03:14] 2025-07-25 02:02:42,665 | INFO     | update_server=False
[2025-07-24 22:03:14] 2025-07-25 02:02:42,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 22:03:14] 2025-07-25 02:02:42,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 22:03:14] 2025-07-25 02:02:42,679 | INFO     | aborting loop
[2025-07-24 22:03:14] 2025-07-25 02:02:43,413 | INFO     | all job control threads have been joined
[2025-07-24 22:03:14] 2025-07-25 02:02:43,458 | INFO     | all data control threads have been joined
[2025-07-24 22:03:14] 2025-07-25 02:02:43,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 22:03:14] 2025-07-25 02:02:43,671 | INFO     | [job] retrieve thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:43,686 | INFO     | [job] job monitor thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:43,736 | INFO     | [payload] failed_post thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:43,795 | INFO     | all payload control threads have been joined
[2025-07-24 22:03:14] 2025-07-25 02:02:43,981 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:44,315 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:44,338 | INFO     | [job] validate thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:44,419 | INFO     | [job] control thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:44,464 | INFO     | [data] control thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:44,621 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:44,801 | INFO     | [payload] control thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:44,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 22:03:14] 2025-07-25 02:02:44,895 | INFO     | [payload] validate_post thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:44,993 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:45,061 | INFO     | [data] copytool_in thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:45,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 22:03:14] 2025-07-25 02:02:45,600 | INFO     | [data] copytool_out thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:46,338 | INFO     | [job] queue monitor thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:48,855 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 22:03:14] 2025-07-25 02:02:49,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139646482691904)>', '<ExcThread(monitor, started 139645987825408)>']
[2025-07-24 22:03:14] 2025-07-25 02:02:54,091 | INFO     | all workflow threads have been joined
[2025-07-24 22:03:14] 2025-07-25 02:02:54,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 22:03:14] 2025-07-25 02:02:54,098 | INFO     | traces error code: 0
[2025-07-24 22:03:14] 2025-07-25 02:02:54,098 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 22:03:14] 2025-07-25 02:03:13,807 | INFO     | PID=1163266 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 22:03:14] 2025-07-25 02:03:13,807 | INFO     | .. there are 20 such processes running
[2025-07-24 22:03:14] 2025-07-25 02:03:13,808 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 22:03:14] 2025-07-25 02:03:13,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 22:03:14] 2025-07-25 02:03:13,808 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 22:03:14] 2025-07-25 02:03:13,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 22:03:14] 2025-07-25 02:03:13,809 | INFO     | [monitor] control thread has ended
[2025-07-24 22:03:14] 2025-07-25 02:03:13,983 [wrapper] ==== pilot stdout END ====
[2025-07-24 22:03:14] 2025-07-25 02:03:13,991 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 22:03:14] 2025-07-25 02:03:13,996 [wrapper] pilotpid: 1163266
[2025-07-24 22:03:14] 2025-07-25 02:03:14,003 [wrapper] Pilot exit status: 0
[2025-07-24 22:03:14] 2025-07-25 02:03:14,022 [wrapper] pandaids: 6744927488
[2025-07-24 22:03:14] 2025-07-25 02:03:14,147 [wrapper] cleanup supervisor_pilot 1476314 1163267
[2025-07-24 22:03:14] 2025-07-25 02:03:14,151 [wrapper] Test setup, not cleaning
[2025-07-24 22:03:14] 2025-07-25 02:03:14,157 [wrapper] apfmon messages muted
[2025-07-24 22:03:14] 2025-07-25 02:03:14,160 [wrapper] ==== wrapper stdout END ====
[2025-07-24 22:03:14] 2025-07-25 02:03:14,164 [wrapper] ==== wrapper stderr END ====
[2025-07-24 22:03:14]  *** Error codes and diagnostics ***
[2025-07-24 22:03:14]     "exeErrorCode": 0,
[2025-07-24 22:03:14]     "exeErrorDiag": "",
[2025-07-24 22:03:14]     "pilotErrorCode": 0,
[2025-07-24 22:03:14]     "pilotErrorDiag": "",
[2025-07-24 22:03:14]  *** Listing of results directory ***
[2025-07-24 22:03:14] total 352920
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 15:13 pilot3.tar.gz
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 15:49 queuedata.json
[2025-07-24 22:03:14] -rwx------. 1 boincer umatlas     36292 Jul 24 15:49 runpilot2-wrapper.sh
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas       100 Jul 24 20:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 22:03:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 20:29 run_atlas
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas       105 Jul 24 20:29 job.xml
[2025-07-24 22:03:14] -rw-r--r--. 2 boincer umatlas 145138688 Jul 24 20:29 EVNT.45743347._000434.pool.root.1
[2025-07-24 22:03:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 20:29 start_atlas.sh
[2025-07-24 22:03:14] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 20:29 shared
[2025-07-24 22:03:14] -rw-r--r--. 2 boincer umatlas    542882 Jul 24 20:29 input.tar.gz
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas         0 Jul 24 20:29 boinc_lockfile
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas      2560 Jul 24 20:29 pandaJob.out
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas    979709 Jul 24 20:29 agis_schedconf.cvmfs.json
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas   1593052 Jul 24 20:29 agis_ddmendpoints.agis.ALL.json
[2025-07-24 22:03:14] drwx------. 4 boincer umatlas      4096 Jul 24 20:29 pilot3
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas      6931 Jul 24 21:58 init_data.xml
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas 210716733 Jul 24 22:01 HITS.45743349._008270.pool.root.1
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas       530 Jul 24 22:02 boinc_task_state.xml
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas      1040 Jul 24 22:02 memory_monitor_summary.json
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas    304747 Jul 24 22:02 log.45743349._008270.job.log.tgz.1
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas      7790 Jul 24 22:02 heartbeat.json
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas        27 Jul 24 22:03 wrapper_checkpoint.txt
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas        95 Jul 24 22:03 pilot_heartbeat.json
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas       823 Jul 24 22:03 pilotlog.txt
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas    522229 Jul 24 22:03 log.45743349._008270.job.log.1
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas       357 Jul 24 22:03 output.list
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas       620 Jul 24 22:03 runtime_log
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas    849920 Jul 24 22:03 result.tar.gz
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas      8655 Jul 24 22:03 runtime_log.err
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas       654 Jul 24 22:03 iOpKDmx7Gz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIRNLDmkYkjEo.diag
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas      8192 Jul 24 22:03 boinc_mmap_file
[2025-07-24 22:03:14] -rw-r--r--. 1 boincer umatlas     21839 Jul 24 22:03 stderr.txt
[2025-07-24 22:03:14] HITS file was successfully produced:
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas 210716733 Jul 24 22:01 shared/HITS.pool.root.1
[2025-07-24 22:03:14]  *** Contents of shared directory: ***
[2025-07-24 22:03:14] total 348904
[2025-07-24 22:03:14] -rw-r--r--. 2 boincer umatlas 145138688 Jul 24 20:29 ATLAS.root_0
[2025-07-24 22:03:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 20:29 start_atlas.sh
[2025-07-24 22:03:14] -rw-r--r--. 2 boincer umatlas    542882 Jul 24 20:29 input.tar.gz
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas 210716733 Jul 24 22:01 HITS.pool.root.1
[2025-07-24 22:03:14] -rw-------. 1 boincer umatlas    849920 Jul 24 22:03 result.tar.gz
22:03:36 (1159142): run_atlas exited; CPU time 38907.671434
22:03:36 (1159142): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN