Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:38:48 (567111): wrapper (7.7.26015): starting
19:38:48 (567111): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 19:38:48] Arguments: --nthreads 8
[2025-07-24 19:38:48] Threads: 8
[2025-07-24 19:38:48] Checking for CVMFS
[2025-07-24 19:38:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 19:38:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 19:38:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 19:38:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 19:38:49] 2.12.6.0 4167112 14731 332344 148719 2 378 29075390 32935937 18623 16776704 0 78453172 99.605 137949583 19496 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-24 19:38:49] CVMFS is ok
[2025-07-24 19:38:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 19:38:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 19:38:49] Further information can be found at the LHC@home message board.
[2025-07-24 19:38:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 19:38:49] Checking for apptainer binary...
[2025-07-24 19:38:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 19:38:49] Running /usr/bin/apptainer --version
[2025-07-24 19:38:49] apptainer version 1.4.1-1.el9
[2025-07-24 19:38:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 19:38:49] c7-16-8.aglt2.org
[2025-07-24 19:38:49] apptainer works
[2025-07-24 19:38:50] Set ATHENA_PROC_NUMBER=8
[2025-07-24 19:38:50] Set ATHENA_CORE_NUMBER=8
[2025-07-24 19:38:50] Starting ATLAS job with PandaID=6744922741
[2025-07-24 19:38:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 21:05:59]  *** The last 200 lines of the pilot log: ***
[2025-07-24 21:05:59]  status=None
[2025-07-24 21:05:59]  status_code=0
[2025-07-24 21:05:59]  storage_token=
[2025-07-24 21:05:59]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6744922741/log.45743349._006786.job.log.tgz.1
[2025-07-24 21:05:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/f4/log.45743349._006786.job.log.tgz.1
[2025-07-24 21:05:59]  workdir=None
[2025-07-24 21:05:59] ]
[2025-07-24 21:05:59] 2025-07-25 01:05:16,593 | INFO     | transferring file log.45743349._006786.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6744922741/log.45743349._006786.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-24 21:05:59] 2025-07-25 01:05:16,593 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6744922741/log.45743349._006786.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._006786.job
[2025-07-24 21:05:59] 2025-07-25 01:05:16,621 | INFO     | adding to output.list: log.45743349._006786.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/f4/log.45743349._006786.job.log.tg
[2025-07-24 21:05:59] 2025-07-25 01:05:16,622 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-24 21:05:59] 2025-07-25 01:05:16,622 | INFO     | summary of transferred files:
[2025-07-24 21:05:59] 2025-07-25 01:05:16,622 | INFO     |  -- lfn=log.45743349._006786.job.log.tgz.1, status_code=0, status=transferred
[2025-07-24 21:05:59] 2025-07-25 01:05:16,623 | INFO     | stage-out finished correctly
[2025-07-24 21:05:59] 2025-07-25 01:05:17,414 | WARNING  | process 579978 can no longer be monitored (due to stat problems) - aborting
[2025-07-24 21:05:59] 2025-07-25 01:05:17,414 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6744922741/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 21:05:59] 2025-07-25 01:05:17,917 | INFO     | number of running child processes to parent process 579978: 1
[2025-07-24 21:05:59] 2025-07-25 01:05:17,917 | INFO     | maximum number of monitored processes: 6
[2025-07-24 21:05:59] 2025-07-25 01:05:18,013 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-24 21:05:59] 2025-07-25 01:05:20,421 | INFO     | monitor loop #358: job 0:6744922741 is in state 'finished'
[2025-07-24 21:05:59] 2025-07-25 01:05:20,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 21:05:59] 2025-07-25 01:05:20,598 | INFO     | job 6744922741 has state=finished
[2025-07-24 21:05:59] 2025-07-25 01:05:20,609 | INFO     | preparing for final server update for job 6744922741 in state='finished'
[2025-07-24 21:05:59] 2025-07-25 01:05:20,610 | INFO     | this job has now completed (state=finished)
[2025-07-24 21:05:59] 2025-07-25 01:05:20,610 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-24 21:05:59] 2025-07-25 01:05:20,610 | INFO     | log transfer has been attempted: DONE
[2025-07-24 21:05:59] 2025-07-25 01:05:20,611 | INFO     | job 6744922741 has finished - writing final server update
[2025-07-24 21:05:59] 2025-07-25 01:05:20,611 | INFO     | total number of processed events: 400 (read)
[2025-07-24 21:05:59] 2025-07-25 01:05:20,611 | INFO     | executing command: lscpu
[2025-07-24 21:05:59] 2025-07-25 01:05:20,721 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 21:05:59] 2025-07-25 01:05:22,926 | INFO     | monitor loop #359: job 0:6744922741 is in state 'finished'
[2025-07-24 21:05:59] 2025-07-25 01:05:22,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 21:05:59] 2025-07-25 01:05:24,154 | INFO     | PID=572311 has CPU usage=15.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 21:05:59] 2025-07-25 01:05:24,154 | INFO     | .. there are 24 such processes running
[2025-07-24 21:05:59] 2025-07-25 01:05:25,195 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 21:05:59] 2025-07-25 01:05:25,209 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3005.258281250002
[2025-07-24 21:05:59] 2025-07-25 01:05:25,229 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6744922741/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 21:05:59] 2025-07-25 01:05:25,230 | INFO     | extracted standard info from prmon json
[2025-07-24 21:05:59] 2025-07-25 01:05:25,230 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 21:05:59] 2025-07-25 01:05:25,230 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 21:05:59] 2025-07-25 01:05:25,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 21:05:59] 2025-07-25 01:05:25,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 21:05:59] 2025-07-25 01:05:25,232 | INFO     | fitting pss+swap vs Time
[2025-07-24 21:05:59] 2025-07-25 01:05:25,232 | INFO     | sum of square deviations: 147126479.5
[2025-07-24 21:05:59] 2025-07-25 01:05:25,233 | INFO     | sum of deviations: -13639104283.5
[2025-07-24 21:05:59] 2025-07-25 01:05:25,233 | INFO     | mean x: 1753403035.5
[2025-07-24 21:05:59] 2025-07-25 01:05:25,233 | INFO     | mean y: 2332786.9102564105
[2025-07-24 21:05:59] 2025-07-25 01:05:25,233 | INFO     | -- intersect: 162548510289.85223
[2025-07-24 21:05:59] 2025-07-25 01:05:25,233 | INFO     | intersect: 162548510289.85223
[2025-07-24 21:05:59] 2025-07-25 01:05:25,233 | INFO     | chi2: 0.1427104463605699
[2025-07-24 21:05:59] 2025-07-25 01:05:25,234 | INFO     | -- intersect: 162548510289.85223
[2025-07-24 21:05:59] 2025-07-25 01:05:25,234 | INFO     | current memory leak: -92.70 B/s (using 78 data points, chi2=0.14)
[2025-07-24 21:05:59] 2025-07-25 01:05:25,234 | INFO     | could have reported an average CPU frequency of 2987 MHz (6 samples)
[2025-07-24 21:05:59] 2025-07-25 01:05:25,234 | INFO     | ..............................
[2025-07-24 21:05:59] 2025-07-25 01:05:25,234 | INFO     | . Timing measurements:
[2025-07-24 21:05:59] 2025-07-25 01:05:25,234 | INFO     | . get job = 0 s
[2025-07-24 21:05:59] 2025-07-25 01:05:25,234 | INFO     | . initial setup = 2 s
[2025-07-24 21:05:59] 2025-07-25 01:05:25,235 | INFO     | . payload setup = 10 s
[2025-07-24 21:05:59] 2025-07-25 01:05:25,235 | INFO     | . stage-in = 0 s
[2025-07-24 21:05:59] 2025-07-25 01:05:25,235 | INFO     | . payload execution = 5138 s
[2025-07-24 21:05:59] 2025-07-25 01:05:25,235 | INFO     | . stage-out = 0 s
[2025-07-24 21:05:59] 2025-07-25 01:05:25,235 | INFO     | . log creation = 0 s
[2025-07-24 21:05:59] 2025-07-25 01:05:25,235 | INFO     | ..............................
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | 
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | job summary report
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | --------------------------------------------------
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | PanDA job id: 6744922741
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | task id: 45743349
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | errors: (none)
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | pilot state: finished 
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | transexitcode: 0
[2025-07-24 21:05:59] 2025-07-25 01:05:25,365 | INFO     | exeerrorcode: 0
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | exeerrordiag: 
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | exitcode: 0
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | exitmsg: OK
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | cpuconsumptiontime: 36023 s
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | nevents: 400
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | neventsw: 0
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | pid: 579978
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | pgrp: 579978
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | corecount: 8
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | event service: False
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | sizes: {0: 2396641, 1: 2397497, 8: 2397759, 12: 2397787, 5152: 2424216, 5153: 2424215, 5154: 2433397, 5155: 2433453, 5162: 2433647}
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | --------------------------------------------------
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | 
[2025-07-24 21:05:59] 2025-07-25 01:05:25,366 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-24 21:05:59] 2025-07-25 01:05:25,395 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,395 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,395 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,395 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 21:05:59] 2025-07-25 01:05:25,396 | INFO     | job 6744922741 has completed (purged errors)
[2025-07-24 21:05:59] 2025-07-25 01:05:25,397 | INFO     | overall cleanup function is called
[2025-07-24 21:05:59] 2025-07-25 01:05:26,406 | INFO     | --- collectZombieJob: --- 10, [579978]
[2025-07-24 21:05:59] 2025-07-25 01:05:26,407 | INFO     | zombie collector waiting for pid 579978
[2025-07-24 21:05:59] 2025-07-25 01:05:26,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 21:05:59] 2025-07-25 01:05:26,408 | INFO     | collected zombie processes
[2025-07-24 21:05:59] 2025-07-25 01:05:26,408 | INFO     | will attempt to kill all subprocesses of pid=579978
[2025-07-24 21:05:59] 2025-07-25 01:05:26,850 | INFO     | process IDs to be killed: [579978] (in reverse order)
[2025-07-24 21:05:59] 2025-07-25 01:05:27,005 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 21:05:59] 2025-07-25 01:05:27,005 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 21:05:59] 2025-07-25 01:05:27,024 | INFO     | did not find any defunct processes belonging to 579978
[2025-07-24 21:05:59] 2025-07-25 01:05:27,043 | INFO     | did not find any defunct processes belonging to 579978
[2025-07-24 21:05:59] 2025-07-25 01:05:27,043 | INFO     | ready for new job
[2025-07-24 21:05:59] 2025-07-25 01:05:27,044 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 21:05:59] 2025-07-25 01:05:27,046 | INFO     | ***************************************
[2025-07-24 21:05:59] 2025-07-25 01:05:27,046 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 21:05:59] 2025-07-25 01:05:27,046 | INFO     | ***************************************
[2025-07-24 21:05:59] 2025-07-25 01:05:27,046 | INFO     | 
[2025-07-24 21:05:59] 2025-07-25 01:05:27,064 | INFO     | architecture information:
[2025-07-24 21:05:59] 2025-07-25 01:05:27,064 | INFO     | executing command: cat /etc/os-release
[2025-07-24 21:05:59] 2025-07-25 01:05:27,086 | INFO     | cat /etc/os-release:
[2025-07-24 21:05:59] NAME="CentOS Linux"
[2025-07-24 21:05:59] VERSION="7 (Core)"
[2025-07-24 21:05:59] ID="centos"
[2025-07-24 21:05:59] ID_LIKE="rhel fedora"
[2025-07-24 21:05:59] VERSION_ID="7"
[2025-07-24 21:05:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 21:05:59] ANSI_COLOR="0;31"
[2025-07-24 21:05:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 21:05:59] HOME_URL="https://www.centos.org/"
[2025-07-24 21:05:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 21:05:59] 
[2025-07-24 21:05:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 21:05:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 21:05:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 21:05:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 21:05:59] 
[2025-07-24 21:05:59] 2025-07-25 01:05:27,086 | INFO     | ***************************************
[2025-07-24 21:05:59] 2025-07-25 01:05:27,589 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-24 21:05:59] 2025-07-25 01:05:27,610 | INFO     | sufficient remaining disk space (76061605888 B)
[2025-07-24 21:05:59] 2025-07-25 01:05:27,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 21:05:59] 2025-07-25 01:05:27,610 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 21:05:59] 2025-07-25 01:05:27,611 | INFO     | update_server=False
[2025-07-24 21:05:59] 2025-07-25 01:05:27,611 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 21:05:59] 2025-07-25 01:05:27,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 21:05:59] 2025-07-25 01:05:27,802 | INFO     | all job control threads have been joined
[2025-07-24 21:05:59] 2025-07-25 01:05:27,942 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-24 21:05:59] 2025-07-25 01:05:27,943 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-24 21:05:59] 2025-07-25 01:05:27,943 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 21:05:59] 2025-07-25 01:05:27,943 | INFO     | will abort loop
[2025-07-24 21:05:59] 2025-07-25 01:05:28,230 | INFO     | all data control threads have been joined
[2025-07-24 21:05:59] 2025-07-25 01:05:28,307 | INFO     | all payload control threads have been joined
[2025-07-24 21:05:59] 2025-07-25 01:05:28,616 | INFO     | [job] retrieve thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:28,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 21:05:59] 2025-07-25 01:05:28,751 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:28,810 | INFO     | [job] control thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:28,950 | INFO     | [job] job monitor thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:29,236 | INFO     | [data] control thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:29,265 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:29,312 | INFO     | [payload] control thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:29,544 | INFO     | [payload] failed_post thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:29,626 | INFO     | [data] copytool_out thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:29,687 | INFO     | [payload] validate_post thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:29,691 | INFO     | [data] copytool_in thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:30,117 | INFO     | [job] validate thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:30,118 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:30,378 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 21:05:59] 2025-07-25 01:05:31,399 | INFO     | [job] queue monitor thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:32,632 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:38,630 | INFO     | job.realtimelogging is not enabled
[2025-07-24 21:05:59] 2025-07-25 01:05:39,636 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 21:05:59] 2025-07-25 01:05:40,475 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139951011878720)>', '<ExcThread(monitor, started 139950301378304)>']
[2025-07-24 21:05:59] 2025-07-25 01:05:45,505 | INFO     | all workflow threads have been joined
[2025-07-24 21:05:59] 2025-07-25 01:05:45,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 21:05:59] 2025-07-25 01:05:45,505 | INFO     | traces error code: 0
[2025-07-24 21:05:59] 2025-07-25 01:05:45,506 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 21:05:59] 2025-07-25 01:05:58,819 | INFO     | PID=572311 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-24 21:05:59] 2025-07-25 01:05:58,820 | INFO     | .. there are 24 such processes running
[2025-07-24 21:05:59] 2025-07-25 01:05:58,821 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 21:05:59] 2025-07-25 01:05:58,821 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 21:05:59] 2025-07-25 01:05:58,821 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 21:05:59] 2025-07-25 01:05:58,821 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 21:05:59] 2025-07-25 01:05:58,821 | INFO     | [monitor] control thread has ended
[2025-07-24 21:05:59] 2025-07-25 01:05:59,085 [wrapper] ==== pilot stdout END ====
[2025-07-24 21:05:59] 2025-07-25 01:05:59,090 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 21:05:59] 2025-07-25 01:05:59,096 [wrapper] pilotpid: 572311
[2025-07-24 21:05:59] 2025-07-25 01:05:59,099 [wrapper] Pilot exit status: 0
[2025-07-24 21:05:59] 2025-07-25 01:05:59,110 [wrapper] pandaids: 6744922741
[2025-07-24 21:05:59] 2025-07-25 01:05:59,210 [wrapper] cleanup supervisor_pilot  942253 572312
[2025-07-24 21:05:59] 2025-07-25 01:05:59,214 [wrapper] Test setup, not cleaning
[2025-07-24 21:05:59] 2025-07-25 01:05:59,218 [wrapper] apfmon messages muted
[2025-07-24 21:05:59] 2025-07-25 01:05:59,221 [wrapper] ==== wrapper stdout END ====
[2025-07-24 21:05:59] 2025-07-25 01:05:59,223 [wrapper] ==== wrapper stderr END ====
[2025-07-24 21:05:59]  *** Error codes and diagnostics ***
[2025-07-24 21:05:59]     "exeErrorCode": 0,
[2025-07-24 21:05:59]     "exeErrorDiag": "",
[2025-07-24 21:05:59]     "pilotErrorCode": 0,
[2025-07-24 21:05:59]     "pilotErrorDiag": "",
[2025-07-24 21:05:59]  *** Listing of results directory ***
[2025-07-24 21:05:59] total 347820
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 14:26 pilot3.tar.gz
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 14:56 queuedata.json
[2025-07-24 21:05:59] -rwx------. 1 boincer umatlas     36292 Jul 24 14:56 runpilot2-wrapper.sh
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas       100 Jul 24 19:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 21:05:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 19:38 run_atlas
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas       105 Jul 24 19:38 job.xml
[2025-07-24 21:05:59] -rw-r--r--. 2 boincer umatlas 146768170 Jul 24 19:38 EVNT.45743347._000353.pool.root.1
[2025-07-24 21:05:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 19:38 start_atlas.sh
[2025-07-24 21:05:59] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 19:38 shared
[2025-07-24 21:05:59] -rw-r--r--. 2 boincer umatlas    542882 Jul 24 19:38 input.tar.gz
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas         0 Jul 24 19:38 boinc_lockfile
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas      2560 Jul 24 19:38 pandaJob.out
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas    979709 Jul 24 19:39 agis_schedconf.cvmfs.json
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas   1593052 Jul 24 19:39 agis_ddmendpoints.agis.ALL.json
[2025-07-24 21:05:59] drwx------. 4 boincer umatlas      4096 Jul 24 19:39 pilot3
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas      6932 Jul 24 21:01 init_data.xml
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas 203919990 Jul 24 21:04 HITS.45743349._006786.pool.root.1
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas       529 Jul 24 21:04 boinc_task_state.xml
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas      1032 Jul 24 21:05 memory_monitor_summary.json
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas    310702 Jul 24 21:05 log.45743349._006786.job.log.tgz.1
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas      7771 Jul 24 21:05 heartbeat.json
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas      8192 Jul 24 21:05 boinc_mmap_file
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas        27 Jul 24 21:05 wrapper_checkpoint.txt
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas        95 Jul 24 21:05 pilot_heartbeat.json
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas       822 Jul 24 21:05 pilotlog.txt
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas    492986 Jul 24 21:05 log.45743349._006786.job.log.1
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas       357 Jul 24 21:05 output.list
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas       620 Jul 24 21:05 runtime_log
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas    819200 Jul 24 21:05 result.tar.gz
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas       651 Jul 24 21:05 uXMLDmXIGz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmwVxKDmnVjUkn.diag
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas      8655 Jul 24 21:05 runtime_log.err
[2025-07-24 21:05:59] -rw-r--r--. 1 boincer umatlas     22122 Jul 24 21:05 stderr.txt
[2025-07-24 21:05:59] HITS file was successfully produced:
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas 203919990 Jul 24 21:04 shared/HITS.pool.root.1
[2025-07-24 21:05:59]  *** Contents of shared directory: ***
[2025-07-24 21:05:59] total 343828
[2025-07-24 21:05:59] -rw-r--r--. 2 boincer umatlas 146768170 Jul 24 19:38 ATLAS.root_0
[2025-07-24 21:05:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 19:38 start_atlas.sh
[2025-07-24 21:05:59] -rw-r--r--. 2 boincer umatlas    542882 Jul 24 19:38 input.tar.gz
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas 203919990 Jul 24 21:04 HITS.pool.root.1
[2025-07-24 21:05:59] -rw-------. 1 boincer umatlas    819200 Jul 24 21:05 result.tar.gz
21:06:21 (567111): run_atlas exited; CPU time 36206.119896
21:06:21 (567111): called boinc_finish(0)

</stderr_txt>
]]>

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