Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:45:40 (1436433): wrapper (7.7.26015): starting
15:45:40 (1436433): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 15:45:40] Arguments: --nthreads 12
[2025-07-24 15:45:40] Threads: 12
[2025-07-24 15:45:40] Checking for CVMFS
[2025-07-24 15:45:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 15:45:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 15:45:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 15:45:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 15:45:41] 2.11.5.0 7126 33438 255008 148718 2 407 32327825 45568000 12192 130560 0 287263501 99.756 203206058 29767 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-07-24 15:45:41] CVMFS is ok
[2025-07-24 15:45:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 15:45:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 15:45:41] Further information can be found at the LHC@home message board.
[2025-07-24 15:45:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 15:45:41] Checking for apptainer binary...
[2025-07-24 15:45:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 15:45:41] Running /usr/bin/apptainer --version
[2025-07-24 15:45:41] apptainer version 1.4.1-1.el9
[2025-07-24 15:45:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 15:45:41] wns0084.triumf.lcg
[2025-07-24 15:45:41] apptainer works
[2025-07-24 15:45:41] Set ATHENA_PROC_NUMBER=12
[2025-07-24 15:45:41] Set ATHENA_CORE_NUMBER=12
[2025-07-24 15:45:41] Starting ATLAS job with PandaID=6744932052
[2025-07-24 15:45:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 15:50:10]  *** The last 200 lines of the pilot log: ***
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | WARNING  | wrong length of table data, x=[1753397214.0], y=[2321.0] (must be same and length>=4)
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | could have reported an average CPU frequency of 2504 MHz (4 samples)
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | ..............................
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . Timing measurements:
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . get job = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . initial setup = 2 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . payload setup = 19 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . stage-in = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . payload execution = 51 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . stage-out = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . log creation = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | ..............................
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 15:50:10] 2025-07-24 22:49:37,995 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744932052/pilotlog.txt
[2025-07-24 15:50:10] 2025-07-24 22:49:38,006 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-24 15:50:10] - Log from pilotlog.txt -
[2025-07-24 15:50:10] 2025-07-24 22:49:37,992 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744932052/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | INFO     | extracted standard info from prmon json
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | WARNING  | wrong length of table data, x=[1753397214.0], y=[2321.0] (must be same and length>=4)
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | could have reported an average CPU frequency of 2504 MHz (4 samples)
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | ..............................
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . Timing measurements:
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . get job = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . initial setup = 2 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . payload setup = 19 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . stage-in = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . payload execution = 51 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . stage-out = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . log creation = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | ..............................
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 15:50:10] 2025-07-24 22:49:37,995 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744932052/pilotlog.txt
[2025-07-24 15:50:10] 2025-07-24 22:49:38,007 | WARNING  | 
[2025-07-24 15:50:10] [begin log extracts]
[2025-07-24 15:50:10] - Log from pilotlog.txt -
[2025-07-24 15:50:10] 2025-07-24 22:49:37,992 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744932052/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | INFO     | extracted standard info from prmon json
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 15:50:10] 2025-07-24 22:49:37,993 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | WARNING  | wrong length of table data, x=[1753397214.0], y=[2321.0] (must be same and length>=4)
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | could have reported an average CPU frequency of 2504 MHz (4 samples)
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | ..............................
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . Timing measurements:
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . get job = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . initial setup = 2 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . payload setup = 19 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . stage-in = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . payload execution = 51 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . stage-out = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | . log creation = 0 s
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | ..............................
[2025-07-24 15:50:10] 2025-07-24 22:49:37,994 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 15:50:10] 2025-07-24 22:49:37,995 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744932052/pilotlog.txt
[2025-07-24 15:50:10] [end log extracts]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,007 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-24 15:50:10] 2025-07-24 22:49:38,007 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | 
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | job summary report
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | --------------------------------------------------
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | PanDA job id: 6744932052
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | task id: 45743349
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-24 15:47:21,658 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | pilot state: failed 
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | transexitcode: 65
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | exeerrorcode: 65
[2025-07-24 15:50:10] 2025-07-24 22:49:38,112 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | exitcode: 65
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | cpuconsumptiontime: 18 s
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | nevents: 0
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | neventsw: 0
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | pid: 1447134
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | pgrp: 1447134
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | corecount: 12
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | event service: False
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | sizes: {0: 2397470, 4: 2397732, 11: 2397760, 75: 2421022, 76: 2425314, 79: 2425370, 203: 2425692}
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | --------------------------------------------------
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | 
[2025-07-24 15:50:10] 2025-07-24 22:49:38,113 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-24 15:50:10] 2025-07-24 22:49:38,200 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,200 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,200 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | job 6744932052 has completed (purged errors)
[2025-07-24 15:50:10] 2025-07-24 22:49:38,201 | INFO     | overall cleanup function is called
[2025-07-24 15:50:10] 2025-07-24 22:49:39,208 | INFO     | --- collectZombieJob: --- 10, [1447134]
[2025-07-24 15:50:10] 2025-07-24 22:49:39,208 | INFO     | zombie collector waiting for pid 1447134
[2025-07-24 15:50:10] 2025-07-24 22:49:39,208 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 15:50:10] 2025-07-24 22:49:39,208 | INFO     | collected zombie processes
[2025-07-24 15:50:10] 2025-07-24 22:49:39,208 | INFO     | will attempt to kill all subprocesses of pid=1447134
[2025-07-24 15:50:10] 2025-07-24 22:49:39,357 | INFO     | process IDs to be killed: [1447134] (in reverse order)
[2025-07-24 15:50:10] 2025-07-24 22:49:39,416 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 15:50:10] 2025-07-24 22:49:39,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 15:50:10] 2025-07-24 22:49:39,423 | INFO     | did not find any defunct processes belonging to 1447134
[2025-07-24 15:50:10] 2025-07-24 22:49:39,430 | INFO     | did not find any defunct processes belonging to 1447134
[2025-07-24 15:50:10] 2025-07-24 22:49:39,430 | INFO     | ready for new job
[2025-07-24 15:50:10] 2025-07-24 22:49:39,430 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 15:50:10] 2025-07-24 22:49:39,431 | INFO     | ***************************************
[2025-07-24 15:50:10] 2025-07-24 22:49:39,431 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 15:50:10] 2025-07-24 22:49:39,431 | INFO     | ***************************************
[2025-07-24 15:50:10] 2025-07-24 22:49:39,431 | INFO     | 
[2025-07-24 15:50:10] 2025-07-24 22:49:39,433 | INFO     | architecture information:
[2025-07-24 15:50:10] 2025-07-24 22:49:39,434 | INFO     | executing command: cat /etc/os-release
[2025-07-24 15:50:10] 2025-07-24 22:49:39,448 | INFO     | cat /etc/os-release:
[2025-07-24 15:50:10] NAME="CentOS Linux"
[2025-07-24 15:50:10] VERSION="7 (Core)"
[2025-07-24 15:50:10] ID="centos"
[2025-07-24 15:50:10] ID_LIKE="rhel fedora"
[2025-07-24 15:50:10] VERSION_ID="7"
[2025-07-24 15:50:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 15:50:10] ANSI_COLOR="0;31"
[2025-07-24 15:50:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 15:50:10] HOME_URL="https://www.centos.org/"
[2025-07-24 15:50:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 15:50:10] 
[2025-07-24 15:50:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 15:50:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 15:50:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 15:50:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 15:50:10] 
[2025-07-24 15:50:10] 2025-07-24 22:49:39,448 | INFO     | ***************************************
[2025-07-24 15:50:10] 2025-07-24 22:49:39,952 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-24 15:50:10] 2025-07-24 22:49:40,061 | INFO     | sufficient remaining disk space (2061372489728 B)
[2025-07-24 15:50:10] 2025-07-24 22:49:40,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 15:50:10] 2025-07-24 22:49:40,062 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 15:50:10] 2025-07-24 22:49:40,062 | INFO     | update_server=False
[2025-07-24 15:50:10] 2025-07-24 22:49:40,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 15:50:10] 2025-07-24 22:49:40,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 15:50:10] 2025-07-24 22:49:40,062 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 15:50:10] 2025-07-24 22:49:40,062 | INFO     | aborting loop
[2025-07-24 15:50:10] 2025-07-24 22:49:40,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 15:50:10] 2025-07-24 22:49:40,296 | INFO     | all job control threads have been joined
[2025-07-24 15:50:10] 2025-07-24 22:49:40,389 | INFO     | all payload control threads have been joined
[2025-07-24 15:50:10] 2025-07-24 22:49:40,633 | INFO     | all data control threads have been joined
[2025-07-24 15:50:10] 2025-07-24 22:49:41,067 | INFO     | [job] queue monitor thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:41,067 | INFO     | [job] job monitor thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:41,068 | INFO     | [job] retrieve thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:41,302 | INFO     | [job] control thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:41,394 | INFO     | [payload] control thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:41,410 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 15:50:10] 2025-07-24 22:49:41,413 | INFO     | [payload] failed_post thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:41,639 | INFO     | [data] control thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:41,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:41,760 | INFO     | [data] copytool_in thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:41,949 | INFO     | [job] validate thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:42,070 | INFO     | [data] copytool_out thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:42,110 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:42,168 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:42,168 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:42,485 | INFO     | [payload] validate_post thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:45,417 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 15:50:10] 2025-07-24 22:49:47,120 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139784234628928)>', '<ExcThread(monitor, started 139783250630400)>']
[2025-07-24 15:50:10] 2025-07-24 22:49:52,146 | INFO     | all workflow threads have been joined
[2025-07-24 15:50:10] 2025-07-24 22:49:52,146 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 15:50:10] 2025-07-24 22:49:52,146 | INFO     | traces error code: 0
[2025-07-24 15:50:10] 2025-07-24 22:49:52,147 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 15:50:10] 2025-07-24 22:50:09,805 | INFO     | PID=1440136 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 15:50:10] 2025-07-24 22:50:09,806 | INFO     | .. there are 21 such processes running
[2025-07-24 15:50:10] 2025-07-24 22:50:09,806 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 15:50:10] 2025-07-24 22:50:09,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 15:50:10] 2025-07-24 22:50:09,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 15:50:10] 2025-07-24 22:50:09,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 15:50:10] 2025-07-24 22:50:09,807 | INFO     | [monitor] control thread has ended
[2025-07-24 15:50:10] 2025-07-24 22:50:10,190 [wrapper] ==== pilot stdout END ====
[2025-07-24 15:50:10] 2025-07-24 22:50:10,193 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 15:50:10] 2025-07-24 22:50:10,195 [wrapper] pilotpid: 1440136
[2025-07-24 15:50:10] 2025-07-24 22:50:10,197 [wrapper] Pilot exit status: 0
[2025-07-24 15:50:10] 2025-07-24 22:50:10,204 [wrapper] pandaids: 6744932052
[2025-07-24 15:50:10] 2025-07-24 22:50:10,246 [wrapper] cleanup supervisor_pilot 1440142 1440137
[2025-07-24 15:50:10] 2025-07-24 22:50:10,248 [wrapper] Test setup, not cleaning
[2025-07-24 15:50:10] 2025-07-24 22:50:10,250 [wrapper] apfmon messages muted
[2025-07-24 15:50:10] 2025-07-24 22:50:10,252 [wrapper] ==== wrapper stdout END ====
[2025-07-24 15:50:10] 2025-07-24 22:50:10,256 [wrapper] ==== wrapper stderr END ====
[2025-07-24 15:50:10]  *** Error codes and diagnostics ***
[2025-07-24 15:50:10]     "exeErrorCode": 65,
[2025-07-24 15:50:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 15:50:10]     "pilotErrorCode": 1305,
[2025-07-24 15:50:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 15:50:10]  *** Listing of results directory ***
[2025-07-24 15:50:10] total 146916
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc    530466 Jul 24 14:07 pilot3.tar.gz
[2025-07-24 15:50:10] -rwx------. 1 boinc boinc     36292 Jul 24 14:14 runpilot2-wrapper.sh
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc      5112 Jul 24 14:14 queuedata.json
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc       100 Jul 24 15:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 15:50:10] -rwxr-xr-x. 1 boinc boinc      7986 Jul 24 15:45 run_atlas
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc       105 Jul 24 15:45 job.xml
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc      6596 Jul 24 15:45 init_data.xml
[2025-07-24 15:50:10] -rw-r--r--. 2 boinc boinc 146364257 Jul 24 15:45 EVNT.45743347._000554.pool.root.1
[2025-07-24 15:50:10] -rw-r--r--. 2 boinc boinc     15095 Jul 24 15:45 start_atlas.sh
[2025-07-24 15:50:10] drwxrwx--x. 2 boinc boinc      4096 Jul 24 15:45 shared
[2025-07-24 15:50:10] -rw-r--r--. 2 boinc boinc    542888 Jul 24 15:45 input.tar.gz
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc         0 Jul 24 15:45 boinc_lockfile
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc      2562 Jul 24 15:45 pandaJob.out
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc    979701 Jul 24 15:45 agis_schedconf.cvmfs.json
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc   1593052 Jul 24 15:45 agis_ddmendpoints.agis.ALL.json
[2025-07-24 15:50:10] drwx------. 4 boinc boinc      4096 Jul 24 15:45 pilot3
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc       524 Jul 24 15:47 boinc_task_state.xml
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc       952 Jul 24 15:47 memory_monitor_summary.json
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc     21477 Jul 24 15:47 log.45743349._010092.job.log.tgz.1
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc      8403 Jul 24 15:49 heartbeat.json
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc      8192 Jul 24 15:50 boinc_mmap_file
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc        22 Jul 24 15:50 wrapper_checkpoint.txt
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc       823 Jul 24 15:50 pilotlog.txt
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc        95 Jul 24 15:50 pilot_heartbeat.json
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc     79992 Jul 24 15:50 log.45743349._010092.job.log.1
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc       188 Jul 24 15:50 output.list
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc       620 Jul 24 15:50 runtime_log
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc    122880 Jul 24 15:50 result.tar.gz
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc      8485 Jul 24 15:50 runtime_log.err
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc       645 Jul 24 15:50 0YjNDmsRIz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYnNLDmxer09n.diag
[2025-07-24 15:50:10] -rw-r--r--. 1 boinc boinc     21791 Jul 24 15:50 stderr.txt
[2025-07-24 15:50:10] No HITS result produced
[2025-07-24 15:50:10]  *** Contents of shared directory: ***
[2025-07-24 15:50:10] total 143604
[2025-07-24 15:50:10] -rw-r--r--. 2 boinc boinc 146364257 Jul 24 15:45 ATLAS.root_0
[2025-07-24 15:50:10] -rw-r--r--. 2 boinc boinc     15095 Jul 24 15:45 start_atlas.sh
[2025-07-24 15:50:10] -rw-r--r--. 2 boinc boinc    542888 Jul 24 15:45 input.tar.gz
[2025-07-24 15:50:10] -rw-------. 1 boinc boinc    122880 Jul 24 15:50 result.tar.gz
15:50:11 (1436433): run_atlas exited; CPU time 24.926440
15:50:11 (1436433): called boinc_finish(0)

</stderr_txt>
]]>

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