Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:54:49 (462785): wrapper (7.7.26015): starting
15:54:49 (462785): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 15:54:49] Arguments: --nthreads 12
[2025-07-24 15:54:49] Threads: 12
[2025-07-24 15:54:49] Checking for CVMFS
[2025-07-24 15:54:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 15:54:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 15:54:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 15:54:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 15:54:50] 2.11.5.0 7120 33448 341284 148718 0 216 36749808 45568001 17281 130560 0 246589799 99.742 177785638 22895 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-24 15:54:50] CVMFS is ok
[2025-07-24 15:54:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 15:54:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 15:54:50] Further information can be found at the LHC@home message board.
[2025-07-24 15:54:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 15:54:50] Checking for apptainer binary...
[2025-07-24 15:54:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 15:54:50] Running /usr/bin/apptainer --version
[2025-07-24 15:54:50] apptainer version 1.4.1-1.el9
[2025-07-24 15:54:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 15:54:51] wns0054.triumf.lcg
[2025-07-24 15:54:51] apptainer works
[2025-07-24 15:54:51] Set ATHENA_PROC_NUMBER=12
[2025-07-24 15:54:51] Set ATHENA_CORE_NUMBER=12
[2025-07-24 15:54:51] Starting ATLAS job with PandaID=6744931846
[2025-07-24 15:54:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 15:59:59]  *** The last 200 lines of the pilot log: ***
[2025-07-24 15:59:59] 2025-07-24 22:59:26,037 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 15:59:59] 2025-07-24 22:59:26,037 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | WARNING  | wrong length of table data, x=[1753397805.0], y=[2219.0] (must be same and length>=4)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | could have reported an average CPU frequency of 2510 MHz (4 samples)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | ..............................
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . Timing measurements:
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . get job = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . initial setup = 3 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . payload setup = 21 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . stage-in = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . payload execution = 45 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . stage-out = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . log creation = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | ..............................
[2025-07-24 15:59:59] 2025-07-24 22:59:26,039 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 15:59:59] 2025-07-24 22:59:26,039 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744931846/pilotlog.txt
[2025-07-24 15:59:59] 2025-07-24 22:59:26,086 | INFO     | monitor loop #72: job 0:6744931846 is in state 'failed'
[2025-07-24 15:59:59] 2025-07-24 22:59:26,087 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,135 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-24 15:59:59] - Log from pilotlog.txt -
[2025-07-24 15:59:59] 2025-07-24 22:59:26,028 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 15:59:59] 2025-07-24 22:59:26,028 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 15:59:59] 2025-07-24 22:59:26,037 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 15:59:59] 2025-07-24 22:59:26,037 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | WARNING  | wrong length of table data, x=[1753397805.0], y=[2219.0] (must be same and length>=4)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | could have reported an average CPU frequency of 2510 MHz (4 samples)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | ..............................
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . Timing measurements:
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . get job = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . initial setup = 3 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . payload setup = 21 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . stage-in = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . payload execution = 45 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . stage-out = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . log creation = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | ..............................
[2025-07-24 15:59:59] 2025-07-24 22:59:26,039 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 15:59:59] 2025-07-24 22:59:26,039 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744931846/pilotlog.txt
[2025-07-24 15:59:59] 2025-07-24 22:59:26,086 | INFO     | monitor loop #72: job 0:6744931846 is in state 'failed'
[2025-07-24 15:59:59] 2025-07-24 22:59:26,087 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,135 | WARNING  | 
[2025-07-24 15:59:59] [begin log extracts]
[2025-07-24 15:59:59] - Log from pilotlog.txt -
[2025-07-24 15:59:59] 2025-07-24 22:59:26,028 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 15:59:59] 2025-07-24 22:59:26,028 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 15:59:59] 2025-07-24 22:59:26,037 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 15:59:59] 2025-07-24 22:59:26,037 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | WARNING  | wrong length of table data, x=[1753397805.0], y=[2219.0] (must be same and length>=4)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | could have reported an average CPU frequency of 2510 MHz (4 samples)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | ..............................
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . Timing measurements:
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . get job = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . initial setup = 3 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . payload setup = 21 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . stage-in = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . payload execution = 45 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . stage-out = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | . log creation = 0 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,038 | INFO     | ..............................
[2025-07-24 15:59:59] 2025-07-24 22:59:26,039 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 15:59:59] 2025-07-24 22:59:26,039 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744931846/pilotlog.txt
[2025-07-24 15:59:59] 2025-07-24 22:59:26,086 | INFO     | monitor loop #72: job 0:6744931846 is in state 'failed'
[2025-07-24 15:59:59] 2025-07-24 22:59:26,087 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-24 15:59:59] [end log extracts]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,135 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,136 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-24 15:59:59] 2025-07-24 22:59:26,599 | INFO     | 
[2025-07-24 15:59:59] 2025-07-24 22:59:26,599 | INFO     | job summary report
[2025-07-24 15:59:59] 2025-07-24 22:59:26,599 | INFO     | --------------------------------------------------
[2025-07-24 15:59:59] 2025-07-24 22:59:26,599 | INFO     | PanDA job id: 6744931846
[2025-07-24 15:59:59] 2025-07-24 22:59:26,599 | INFO     | task id: 45743349
[2025-07-24 15:59:59] 2025-07-24 22:59:26,599 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-24 15:57:05,473 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-24 15:59:59] 2025-07-24 22:59:26,599 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 15:59:59] 2025-07-24 22:59:26,599 | INFO     | pilot state: failed 
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | transexitcode: 65
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | exeerrorcode: 65
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | exitcode: 65
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | cpuconsumptiontime: 17 s
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | nevents: 0
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | neventsw: 0
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | pid: 472694
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | pgrp: 472694
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | corecount: 12
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | event service: False
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | sizes: {0: 2397470, 11: 2397470, 15: 2397760, 22: 2397788, 70: 2421217, 71: 2421193, 72: 2425641, 73: 2425669, 204: 2425835}
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | --------------------------------------------------
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | 
[2025-07-24 15:59:59] 2025-07-24 22:59:26,600 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-24 15:59:59] 2025-07-24 22:59:26,662 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,663 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 15:59:59] 2025-07-24 22:59:26,664 | INFO     | job 6744931846 has completed (purged errors)
[2025-07-24 15:59:59] 2025-07-24 22:59:26,664 | INFO     | overall cleanup function is called
[2025-07-24 15:59:59] 2025-07-24 22:59:27,670 | INFO     | --- collectZombieJob: --- 10, [472694]
[2025-07-24 15:59:59] 2025-07-24 22:59:27,670 | INFO     | zombie collector waiting for pid 472694
[2025-07-24 15:59:59] 2025-07-24 22:59:27,670 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 15:59:59] 2025-07-24 22:59:27,670 | INFO     | collected zombie processes
[2025-07-24 15:59:59] 2025-07-24 22:59:27,670 | INFO     | will attempt to kill all subprocesses of pid=472694
[2025-07-24 15:59:59] 2025-07-24 22:59:27,875 | INFO     | process IDs to be killed: [472694] (in reverse order)
[2025-07-24 15:59:59] 2025-07-24 22:59:27,948 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 15:59:59] 2025-07-24 22:59:27,948 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 15:59:59] 2025-07-24 22:59:27,956 | INFO     | did not find any defunct processes belonging to 472694
[2025-07-24 15:59:59] 2025-07-24 22:59:27,964 | INFO     | did not find any defunct processes belonging to 472694
[2025-07-24 15:59:59] 2025-07-24 22:59:27,964 | INFO     | ready for new job
[2025-07-24 15:59:59] 2025-07-24 22:59:27,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 15:59:59] 2025-07-24 22:59:27,965 | INFO     | ***************************************
[2025-07-24 15:59:59] 2025-07-24 22:59:27,966 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 15:59:59] 2025-07-24 22:59:27,966 | INFO     | ***************************************
[2025-07-24 15:59:59] 2025-07-24 22:59:27,966 | INFO     | 
[2025-07-24 15:59:59] 2025-07-24 22:59:27,968 | INFO     | architecture information:
[2025-07-24 15:59:59] 2025-07-24 22:59:27,968 | INFO     | executing command: cat /etc/os-release
[2025-07-24 15:59:59] 2025-07-24 22:59:28,021 | INFO     | cat /etc/os-release:
[2025-07-24 15:59:59] NAME="CentOS Linux"
[2025-07-24 15:59:59] VERSION="7 (Core)"
[2025-07-24 15:59:59] ID="centos"
[2025-07-24 15:59:59] ID_LIKE="rhel fedora"
[2025-07-24 15:59:59] VERSION_ID="7"
[2025-07-24 15:59:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 15:59:59] ANSI_COLOR="0;31"
[2025-07-24 15:59:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 15:59:59] HOME_URL="https://www.centos.org/"
[2025-07-24 15:59:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 15:59:59] 
[2025-07-24 15:59:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 15:59:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 15:59:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 15:59:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 15:59:59] 
[2025-07-24 15:59:59] 2025-07-24 22:59:28,021 | INFO     | ***************************************
[2025-07-24 15:59:59] 2025-07-24 22:59:28,525 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-24 15:59:59] 2025-07-24 22:59:28,620 | INFO     | sufficient remaining disk space (2041468420096 B)
[2025-07-24 15:59:59] 2025-07-24 22:59:28,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 15:59:59] 2025-07-24 22:59:28,620 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 15:59:59] 2025-07-24 22:59:28,620 | INFO     | update_server=False
[2025-07-24 15:59:59] 2025-07-24 22:59:28,620 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 15:59:59] 2025-07-24 22:59:28,674 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 15:59:59] 2025-07-24 22:59:28,878 | INFO     | all job control threads have been joined
[2025-07-24 15:59:59] 2025-07-24 22:59:28,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 15:59:59] 2025-07-24 22:59:28,930 | INFO     | all payload control threads have been joined
[2025-07-24 15:59:59] 2025-07-24 22:59:29,126 | INFO     | all data control threads have been joined
[2025-07-24 15:59:59] 2025-07-24 22:59:29,598 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 15:59:59] 2025-07-24 22:59:29,598 | INFO     | aborting loop
[2025-07-24 15:59:59] 2025-07-24 22:59:29,626 | INFO     | [job] retrieve thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:29,791 | INFO     | [data] copytool_in thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:29,814 | INFO     | [payload] failed_post thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:29,884 | INFO     | [job] control thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:29,936 | INFO     | [payload] control thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:29,975 | INFO     | [job] validate thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:29,978 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:30,132 | INFO     | [data] control thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:30,267 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:30,290 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:30,423 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:30,604 | INFO     | [job] job monitor thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:30,851 | INFO     | [payload] validate_post thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:30,920 | INFO     | [data] copytool_out thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:31,618 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 15:59:59] 2025-07-24 22:59:32,624 | INFO     | [job] queue monitor thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:32,683 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 15:59:59] 2025-07-24 22:59:33,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862823032640)>', '<ExcThread(monitor, started 139862405519104)>']
[2025-07-24 15:59:59] 2025-07-24 22:59:38,450 | INFO     | all workflow threads have been joined
[2025-07-24 15:59:59] 2025-07-24 22:59:38,450 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 15:59:59] 2025-07-24 22:59:38,450 | INFO     | traces error code: 0
[2025-07-24 15:59:59] 2025-07-24 22:59:38,451 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 15:59:59] 2025-07-24 22:59:58,974 | INFO     | PID=466357 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-24 15:59:59] 2025-07-24 22:59:58,974 | INFO     | .. there are 28 such processes running
[2025-07-24 15:59:59] 2025-07-24 22:59:58,974 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 15:59:59] 2025-07-24 22:59:58,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 15:59:59] 2025-07-24 22:59:58,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 15:59:59] 2025-07-24 22:59:58,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 15:59:59] 2025-07-24 22:59:58,974 | INFO     | [monitor] control thread has ended
[2025-07-24 15:59:59] 2025-07-24 22:59:59,108 [wrapper] ==== pilot stdout END ====
[2025-07-24 15:59:59] 2025-07-24 22:59:59,110 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 15:59:59] 2025-07-24 22:59:59,112 [wrapper] pilotpid: 466357
[2025-07-24 15:59:59] 2025-07-24 22:59:59,113 [wrapper] Pilot exit status: 0
[2025-07-24 15:59:59] 2025-07-24 22:59:59,161 [wrapper] pandaids: 6744931846
[2025-07-24 15:59:59] 2025-07-24 22:59:59,366 [wrapper] cleanup supervisor_pilot  466363 466358
[2025-07-24 15:59:59] 2025-07-24 22:59:59,388 [wrapper] Test setup, not cleaning
[2025-07-24 15:59:59] 2025-07-24 22:59:59,390 [wrapper] apfmon messages muted
[2025-07-24 15:59:59] 2025-07-24 22:59:59,392 [wrapper] ==== wrapper stdout END ====
[2025-07-24 15:59:59] 2025-07-24 22:59:59,394 [wrapper] ==== wrapper stderr END ====
[2025-07-24 15:59:59]  *** Error codes and diagnostics ***
[2025-07-24 15:59:59]     "exeErrorCode": 65,
[2025-07-24 15:59:59]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 15:59:59]     "pilotErrorCode": 1305,
[2025-07-24 15:59:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 15:59:59]  *** Listing of results directory ***
[2025-07-24 15:59:59] total 145300
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc    530466 Jul 24 14:07 pilot3.tar.gz
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc      5112 Jul 24 14:10 queuedata.json
[2025-07-24 15:59:59] -rwx------. 1 boinc boinc     36292 Jul 24 14:11 runpilot2-wrapper.sh
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc       100 Jul 24 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 15:59:59] -rwxr-xr-x. 1 boinc boinc      7986 Jul 24 15:54 run_atlas
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc       105 Jul 24 15:54 job.xml
[2025-07-24 15:59:59] -rw-r--r--. 2 boinc boinc 144704421 Jul 24 15:54 EVNT.45743347._000551.pool.root.1
[2025-07-24 15:59:59] -rw-r--r--. 2 boinc boinc     15095 Jul 24 15:54 start_atlas.sh
[2025-07-24 15:59:59] drwxrwx--x. 2 boinc boinc      4096 Jul 24 15:54 shared
[2025-07-24 15:59:59] -rw-r--r--. 2 boinc boinc    542885 Jul 24 15:54 input.tar.gz
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc      6595 Jul 24 15:54 init_data.xml
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc         0 Jul 24 15:54 boinc_lockfile
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc      2562 Jul 24 15:54 pandaJob.out
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc    979701 Jul 24 15:55 agis_schedconf.cvmfs.json
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc   1593052 Jul 24 15:55 agis_ddmendpoints.agis.ALL.json
[2025-07-24 15:59:59] drwx------. 4 boinc boinc      4096 Jul 24 15:55 pilot3
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc       954 Jul 24 15:57 memory_monitor_summary.json
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc     21238 Jul 24 15:57 log.45743349._010052.job.log.tgz.1
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc      8395 Jul 24 15:59 heartbeat.json
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc        95 Jul 24 15:59 pilot_heartbeat.json
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc       523 Jul 24 15:59 boinc_task_state.xml
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc      8192 Jul 24 15:59 boinc_mmap_file
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc        22 Jul 24 15:59 wrapper_checkpoint.txt
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc       822 Jul 24 15:59 pilotlog.txt
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc     80529 Jul 24 15:59 log.45743349._010052.job.log.1
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc       188 Jul 24 15:59 output.list
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc       620 Jul 24 15:59 runtime_log
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc    122880 Jul 24 15:59 result.tar.gz
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc      8485 Jul 24 15:59 runtime_log.err
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc       644 Jul 24 15:59 kgRMDmmOIz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGmNLDmthFyYm.diag
[2025-07-24 15:59:59] -rw-r--r--. 1 boinc boinc     21839 Jul 24 15:59 stderr.txt
[2025-07-24 15:59:59] No HITS result produced
[2025-07-24 15:59:59]  *** Contents of shared directory: ***
[2025-07-24 15:59:59] total 141988
[2025-07-24 15:59:59] -rw-r--r--. 2 boinc boinc 144704421 Jul 24 15:54 ATLAS.root_0
[2025-07-24 15:59:59] -rw-r--r--. 2 boinc boinc     15095 Jul 24 15:54 start_atlas.sh
[2025-07-24 15:59:59] -rw-r--r--. 2 boinc boinc    542885 Jul 24 15:54 input.tar.gz
[2025-07-24 15:59:59] -rw-------. 1 boinc boinc    122880 Jul 24 15:59 result.tar.gz
16:00:01 (462785): run_atlas exited; CPU time 26.695065
16:00:01 (462785): called boinc_finish(0)

</stderr_txt>
]]>

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