Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:45:08 (3014178): wrapper (7.7.26015): starting
17:45:08 (3014178): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 17:45:08] Arguments: --nthreads 4
[2025-07-27 17:45:08] Threads: 4
[2025-07-27 17:45:08] Checking for CVMFS
[2025-07-27 17:45:08] No cvmfs_config command found, will try listing directly
[2025-07-27 17:45:08] CVMFS is ok
[2025-07-27 17:45:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:45:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:45:08] Further information can be found at the LHC@home message board.
[2025-07-27 17:45:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:45:08] Checking for apptainer binary...
[2025-07-27 17:45:08] which: no apptainer in ((null))
[2025-07-27 17:45:08] apptainer is not installed, using version from CVMFS
[2025-07-27 17:45:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:45:08] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2025-07-27 17:45:08] apptainer works
[2025-07-27 17:45:08] Set ATHENA_PROC_NUMBER=4
[2025-07-27 17:45:08] Set ATHENA_CORE_NUMBER=4
[2025-07-27 17:45:08] Starting ATLAS job with PandaID=6744922804
[2025-07-27 17:45:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:33:37 (3404553): wrapper (7.7.26015): starting
21:33:37 (3404553): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 21:33:37] Arguments: --nthreads 4
[2025-07-27 21:33:37] Threads: 4
[2025-07-27 21:33:37] This job has been restarted, cleaning up previous attempt
[2025-07-27 21:33:37] Checking for CVMFS
[2025-07-27 21:33:37] No cvmfs_config command found, will try listing directly
[2025-07-27 21:33:37] CVMFS is ok
[2025-07-27 21:33:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 21:33:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 21:33:37] Further information can be found at the LHC@home message board.
[2025-07-27 21:33:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:33:37] Checking for apptainer binary...
[2025-07-27 21:33:37] which: no apptainer in ((null))
[2025-07-27 21:33:37] apptainer is not installed, using version from CVMFS
[2025-07-27 21:33:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:33:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2025-07-27 21:33:37] apptainer works
[2025-07-27 21:33:37] Set ATHENA_PROC_NUMBER=4
[2025-07-27 21:33:37] Set ATHENA_CORE_NUMBER=4
[2025-07-27 21:33:37] Starting ATLAS job with PandaID=6744922804
[2025-07-27 21:33:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:42:22]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:42:22] 2025-07-27 23:41:49,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:42:22] 2025-07-27 23:41:49,654 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:42:22] 2025-07-27 23:41:49,654 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:42:22] 2025-07-27 23:41:49,660 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:42:22] 2025-07-27 23:41:49,660 | INFO     | sum of square deviations: 4504437945.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,662 | INFO     | sum of deviations: 1541825019.9999428
[2025-07-28 01:42:22] 2025-07-27 23:41:49,662 | INFO     | mean x: 1753652265.5
[2025-07-28 01:42:22] 2025-07-27 23:41:49,662 | INFO     | mean y: 2315830.1967213117
[2025-07-28 01:42:22] 2025-07-27 23:41:49,662 | INFO     | -- intersect: -597942175.8723316
[2025-07-28 01:42:22] 2025-07-27 23:41:49,663 | INFO     | intersect: -597942175.8723316
[2025-07-28 01:42:22] 2025-07-27 23:41:49,663 | INFO     | chi2: 2.2691821621290442
[2025-07-28 01:42:22] 2025-07-27 23:41:49,664 | INFO     | sum of square deviations: 4233158440.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,665 | INFO     | sum of deviations: 16083648326.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,666 | INFO     | mean x: 1753652113.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,666 | INFO     | mean y: 2323864.242677824
[2025-07-28 01:42:22] 2025-07-27 23:41:49,666 | INFO     | -- intersect: -6660579089.05165
[2025-07-28 01:42:22] 2025-07-27 23:41:49,666 | INFO     | intersect: -6660579089.05165
[2025-07-28 01:42:22] 2025-07-27 23:41:49,666 | INFO     | chi2: 1.5029448384644581
[2025-07-28 01:42:22] 2025-07-27 23:41:49,667 | INFO     | current chi2=1.5029448384644581 (change=33.76711382860816 %)
[2025-07-28 01:42:22] 2025-07-27 23:41:49,667 | INFO     | sum of square deviations: 3972995422.5
[2025-07-28 01:42:22] 2025-07-27 23:41:49,669 | INFO     | sum of deviations: 15299106037.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,669 | INFO     | mean x: 1753651960.5
[2025-07-28 01:42:22] 2025-07-27 23:41:49,669 | INFO     | mean y: 2323404.2136752135
[2025-07-28 01:42:22] 2025-07-27 23:41:49,669 | INFO     | -- intersect: -6750593335.569565
[2025-07-28 01:42:22] 2025-07-27 23:41:49,669 | INFO     | intersect: -6750593335.569565
[2025-07-28 01:42:22] 2025-07-27 23:41:49,670 | INFO     | chi2: 1.5032181444509323
[2025-07-28 01:42:22] 2025-07-27 23:41:49,670 | INFO     | current chi2=1.5032181444509323 (change=-0.018184698432003647 %)
[2025-07-28 01:42:22] 2025-07-27 23:41:49,670 | INFO     | right removable region: 233
[2025-07-28 01:42:22] 2025-07-27 23:41:49,671 | INFO     | sum of square deviations: 4233158440.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,672 | INFO     | sum of deviations: -32835112817.999992
[2025-07-28 01:42:22] 2025-07-27 23:41:49,673 | INFO     | mean x: 1753652418.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,673 | INFO     | mean y: 2334973.1966527198
[2025-07-28 01:42:22] 2025-07-27 23:41:49,673 | INFO     | -- intersect: 13604796540.543158
[2025-07-28 01:42:22] 2025-07-27 23:41:49,673 | INFO     | intersect: 13604796540.543158
[2025-07-28 01:42:22] 2025-07-27 23:41:49,674 | INFO     | chi2: 0.8341658172148003
[2025-07-28 01:42:22] 2025-07-27 23:41:49,674 | INFO     | current chi2=0.8341658172148003 (change=63.23936301208405 %)
[2025-07-28 01:42:22] 2025-07-27 23:41:49,674 | INFO     | sum of square deviations: 3972995422.5
[2025-07-28 01:42:22] 2025-07-27 23:41:49,676 | INFO     | sum of deviations: -32382632020.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,676 | INFO     | mean x: 1753652570.5
[2025-07-28 01:42:22] 2025-07-27 23:41:49,676 | INFO     | mean y: 2334692.512820513
[2025-07-28 01:42:22] 2025-07-27 23:41:49,676 | INFO     | -- intersect: 14295803433.963053
[2025-07-28 01:42:22] 2025-07-27 23:41:49,676 | INFO     | intersect: 14295803433.963053
[2025-07-28 01:42:22] 2025-07-27 23:41:49,677 | INFO     | chi2: 0.8296909079129646
[2025-07-28 01:42:22] 2025-07-27 23:41:49,677 | INFO     | current chi2=0.8296909079129646 (change=0.5364532098398598 %)
[2025-07-28 01:42:22] 2025-07-27 23:41:49,677 | INFO     | left removable region: 20
[2025-07-28 01:42:22] 2025-07-27 23:41:49,678 | INFO     | sum of square deviations: 2996454322.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,679 | INFO     | sum of deviations: -12300576738.999998
[2025-07-28 01:42:22] 2025-07-27 23:41:49,679 | INFO     | mean x: 1753652540.0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,679 | INFO     | mean y: 2339595.558685446
[2025-07-28 01:42:22] 2025-07-27 23:41:49,679 | INFO     | -- intersect: 7201160376.318868
[2025-07-28 01:42:22] 2025-07-27 23:41:49,680 | INFO     | intersect: 7201160376.318868
[2025-07-28 01:42:22] 2025-07-27 23:41:49,680 | INFO     | chi2: 0.038188103604346234
[2025-07-28 01:42:22] 2025-07-27 23:41:49,680 | INFO     | -- intersect: 7201160376.318868
[2025-07-28 01:42:22] 2025-07-27 23:41:49,680 | INFO     | current memory leak: -4.11 B/s (using 213 data points, chi2=0.04)
[2025-07-28 01:42:22] 2025-07-27 23:41:49,681 | INFO     | could have reported an average CPU frequency of 2579 MHz (12 samples)
[2025-07-28 01:42:22] 2025-07-27 23:41:49,681 | INFO     | ..............................
[2025-07-28 01:42:22] 2025-07-27 23:41:49,681 | INFO     | . Timing measurements:
[2025-07-28 01:42:22] 2025-07-27 23:41:49,681 | INFO     | . get job = 0 s
[2025-07-28 01:42:22] 2025-07-27 23:41:49,682 | INFO     | . initial setup = 1 s
[2025-07-28 01:42:22] 2025-07-27 23:41:49,682 | INFO     | . payload setup = 6 s
[2025-07-28 01:42:22] 2025-07-27 23:41:49,682 | INFO     | . stage-in = 0 s
[2025-07-28 01:42:22] 2025-07-27 23:41:49,682 | INFO     | . payload execution = 14847 s
[2025-07-28 01:42:22] 2025-07-27 23:41:49,682 | INFO     | . stage-out = 1 s
[2025-07-28 01:42:22] 2025-07-27 23:41:49,682 | INFO     | . log creation = 0 s
[2025-07-28 01:42:22] 2025-07-27 23:41:49,682 | INFO     | ..............................
[2025-07-28 01:42:22] 2025-07-27 23:41:49,794 | INFO     | 
[2025-07-28 01:42:22] 2025-07-27 23:41:49,794 | INFO     | job summary report
[2025-07-28 01:42:22] 2025-07-27 23:41:49,794 | INFO     | --------------------------------------------------
[2025-07-28 01:42:22] 2025-07-27 23:41:49,794 | INFO     | PanDA job id: 6744922804
[2025-07-28 01:42:22] 2025-07-27 23:41:49,795 | INFO     | task id: 45743349
[2025-07-28 01:42:22] 2025-07-27 23:41:49,795 | INFO     | errors: (none)
[2025-07-28 01:42:22] 2025-07-27 23:41:49,795 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:42:22] 2025-07-27 23:41:49,795 | INFO     | pilot state: finished 
[2025-07-28 01:42:22] 2025-07-27 23:41:49,795 | INFO     | transexitcode: 0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,795 | INFO     | exeerrorcode: 0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,795 | INFO     | exeerrordiag: 
[2025-07-28 01:42:22] 2025-07-27 23:41:49,795 | INFO     | exitcode: 0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,795 | INFO     | exitmsg: OK
[2025-07-28 01:42:22] 2025-07-27 23:41:49,796 | INFO     | cpuconsumptiontime: 56897 s
[2025-07-28 01:42:22] 2025-07-27 23:41:49,796 | INFO     | nevents: 400
[2025-07-28 01:42:22] 2025-07-27 23:41:49,796 | INFO     | neventsw: 0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,796 | INFO     | pid: 3415362
[2025-07-28 01:42:22] 2025-07-27 23:41:49,796 | INFO     | pgrp: 3415362
[2025-07-28 01:42:22] 2025-07-27 23:41:49,796 | INFO     | corecount: 4
[2025-07-28 01:42:22] 2025-07-27 23:41:49,796 | INFO     | event service: False
[2025-07-28 01:42:22] 2025-07-27 23:41:49,796 | INFO     | sizes: {0: 2397309, 1: 2397508, 4: 2397770, 12: 2397798, 14857: 2428656, 14859: 2437676, 14861: 2437860, 14869: 2438054}
[2025-07-28 01:42:22] 2025-07-27 23:41:49,797 | INFO     | --------------------------------------------------
[2025-07-28 01:42:22] 2025-07-27 23:41:49,797 | INFO     | 
[2025-07-28 01:42:22] 2025-07-27 23:41:49,797 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-07-28 01:42:22] 2025-07-27 23:41:49,814 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,815 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,815 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,815 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,815 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,815 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,815 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,815 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,816 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,816 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,816 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,816 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,816 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,816 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,816 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,816 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,817 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:42:22] 2025-07-27 23:41:49,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,817 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:42:22] 2025-07-27 23:41:49,817 | INFO     | job 6744922804 has completed (purged errors)
[2025-07-28 01:42:22] 2025-07-27 23:41:49,817 | INFO     | overall cleanup function is called
[2025-07-28 01:42:22] 2025-07-27 23:41:50,822 | INFO     | --- collectZombieJob: --- 10, [3415362]
[2025-07-28 01:42:22] 2025-07-27 23:41:50,822 | INFO     | zombie collector waiting for pid 3415362
[2025-07-28 01:42:22] 2025-07-27 23:41:50,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:42:22] 2025-07-27 23:41:50,823 | INFO     | collected zombie processes
[2025-07-28 01:42:22] 2025-07-27 23:41:50,823 | INFO     | will attempt to kill all subprocesses of pid=3415362
[2025-07-28 01:42:22] 2025-07-27 23:41:51,091 | INFO     | process IDs to be killed: [3415362] (in reverse order)
[2025-07-28 01:42:22] 2025-07-27 23:41:51,170 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:42:22] 2025-07-27 23:41:51,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:42:22] 2025-07-27 23:41:51,178 | INFO     | did not find any defunct processes belonging to 3415362
[2025-07-28 01:42:22] 2025-07-27 23:41:51,184 | INFO     | did not find any defunct processes belonging to 3415362
[2025-07-28 01:42:22] 2025-07-27 23:41:51,185 | INFO     | ready for new job
[2025-07-28 01:42:22] 2025-07-27 23:41:51,185 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:42:22] 2025-07-27 23:41:51,187 | INFO     | ***************************************
[2025-07-28 01:42:22] 2025-07-27 23:41:51,187 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:42:22] 2025-07-27 23:41:51,187 | INFO     | ***************************************
[2025-07-28 01:42:22] 2025-07-27 23:41:51,187 | INFO     | 
[2025-07-28 01:42:22] 2025-07-27 23:41:51,190 | INFO     | architecture information:
[2025-07-28 01:42:22] 2025-07-27 23:41:51,190 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:42:22] 2025-07-27 23:41:51,202 | INFO     | cat /etc/os-release:
[2025-07-28 01:42:22] NAME="CentOS Linux"
[2025-07-28 01:42:22] VERSION="7 (Core)"
[2025-07-28 01:42:22] ID="centos"
[2025-07-28 01:42:22] ID_LIKE="rhel fedora"
[2025-07-28 01:42:22] VERSION_ID="7"
[2025-07-28 01:42:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:42:22] ANSI_COLOR="0;31"
[2025-07-28 01:42:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:42:22] HOME_URL="https://www.centos.org/"
[2025-07-28 01:42:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:42:22] 
[2025-07-28 01:42:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:42:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:42:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:42:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:42:22] 
[2025-07-28 01:42:22] 2025-07-27 23:41:51,203 | INFO     | ***************************************
[2025-07-28 01:42:22] 2025-07-27 23:41:51,706 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-07-28 01:42:22] 2025-07-27 23:41:51,721 | INFO     | sufficient remaining disk space (1661703553024 B)
[2025-07-28 01:42:22] 2025-07-27 23:41:51,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:42:22] 2025-07-27 23:41:51,721 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:42:22] 2025-07-27 23:41:51,721 | INFO     | update_server=False
[2025-07-28 01:42:22] 2025-07-27 23:41:51,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:42:22] 2025-07-27 23:41:51,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:42:22] 2025-07-27 23:41:51,829 | INFO     | all job control threads have been joined
[2025-07-28 01:42:22] 2025-07-27 23:41:51,851 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:42:22] 2025-07-27 23:41:51,851 | INFO     | aborting loop
[2025-07-28 01:42:22] 2025-07-27 23:41:51,880 | INFO     | all data control threads have been joined
[2025-07-28 01:42:22] 2025-07-27 23:41:52,346 | INFO     | all payload control threads have been joined
[2025-07-28 01:42:22] 2025-07-27 23:41:52,722 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:52,727 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:52,834 | INFO     | [job] control thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:52,856 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:52,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:42:22] 2025-07-27 23:41:52,884 | INFO     | [data] control thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:52,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:42:22] 2025-07-27 23:41:53,001 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:53,197 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:53,271 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:53,352 | INFO     | [payload] control thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:53,476 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:53,772 | INFO     | [job] validate thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:53,982 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:54,036 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:54,878 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:41:56,975 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:42:02,311 | INFO     | job.realtimelogging is not enabled
[2025-07-28 01:42:22] 2025-07-27 23:42:03,316 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:42:22] 2025-07-27 23:42:05,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22399198578496)>', '<ExcThread(monitor, started 22398954854144)>']
[2025-07-28 01:42:22] 2025-07-27 23:42:10,415 | INFO     | all workflow threads have been joined
[2025-07-28 01:42:22] 2025-07-27 23:42:10,416 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:42:22] 2025-07-27 23:42:10,416 | INFO     | traces error code: 0
[2025-07-28 01:42:22] 2025-07-27 23:42:10,416 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:42:22] 2025-07-27 23:42:22,139 | INFO     | PID=3408132 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:42:22] 2025-07-27 23:42:22,139 | INFO     | .. there are 8 such processes running
[2025-07-28 01:42:22] 2025-07-27 23:42:22,139 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:42:22] 2025-07-27 23:42:22,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:42:22] 2025-07-27 23:42:22,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:42:22] 2025-07-27 23:42:22,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:42:22] 2025-07-27 23:42:22,140 | INFO     | [monitor] control thread has ended
[2025-07-28 01:42:22] 2025-07-27 23:42:22,258 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:42:22] 2025-07-27 23:42:22,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:42:22] 2025-07-27 23:42:22,263 [wrapper] pilotpid: 3408132
[2025-07-28 01:42:22] 2025-07-27 23:42:22,266 [wrapper] Pilot exit status: 0
[2025-07-28 01:42:22] 2025-07-27 23:42:22,275 [wrapper] pandaids: 6744922804 6744922804
[2025-07-28 01:42:22] 2025-07-27 23:42:22,324 [wrapper] cleanup supervisor_pilot 3783072 3408133
[2025-07-28 01:42:22] 2025-07-27 23:42:22,327 [wrapper] Test setup, not cleaning
[2025-07-28 01:42:22] 2025-07-27 23:42:22,329 [wrapper] apfmon messages muted
[2025-07-28 01:42:22] 2025-07-27 23:42:22,332 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:42:22] 2025-07-27 23:42:22,334 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:42:22]  *** Error codes and diagnostics ***
[2025-07-28 01:42:22]     "exeErrorCode": 0,
[2025-07-28 01:42:22]     "exeErrorDiag": "",
[2025-07-28 01:42:22]     "pilotErrorCode": 0,
[2025-07-28 01:42:22]     "pilotErrorDiag": "",
[2025-07-28 01:42:22]  *** Listing of results directory ***
[2025-07-28 01:42:22] total 494012
[2025-07-28 01:42:22] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc    530466 Jul 24 20:26 pilot3.tar.gz
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc      5112 Jul 24 20:56 queuedata.json
[2025-07-28 01:42:22] -rwx------ 1 boinc boinc     36292 Jul 24 20:56 runpilot2-wrapper.sh
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc       100 Jul 27 17:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:42:22] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 17:45 run_atlas
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc       105 Jul 27 17:45 job.xml
[2025-07-28 01:42:22] -rw-r--r-- 3 boinc boinc 148637804 Jul 27 17:45 EVNT.45743347._000357.pool.root.1
[2025-07-28 01:42:22] -rw-r--r-- 3 boinc boinc 148637804 Jul 27 17:45 ATLAS.root_0
[2025-07-28 01:42:22] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:45 start_atlas.sh
[2025-07-28 01:42:22] drwxrwx--x 2 boinc boinc      4096 Jul 27 17:45 shared
[2025-07-28 01:42:22] -rw-r--r-- 2 boinc boinc    542880 Jul 27 17:45 input.tar.gz
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc         0 Jul 27 17:45 boinc_lockfile
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc      2560 Jul 27 21:33 pandaJob.out
[2025-07-28 01:42:22] -rw------- 1 boinc boinc    980125 Jul 27 21:33 agis_schedconf.cvmfs.json
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc      6430 Jul 27 23:46 init_data.xml
[2025-07-28 01:42:22] -rw------- 1 boinc boinc 201231348 Jul 28 01:41 HITS.45743349._006849.pool.root.1
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc       532 Jul 28 01:41 boinc_task_state.xml
[2025-07-28 01:42:22] -rw------- 1 boinc boinc        96 Jul 28 01:41 pilot_heartbeat.json
[2025-07-28 01:42:22] -rw------- 1 boinc boinc      1038 Jul 28 01:41 memory_monitor_summary.json
[2025-07-28 01:42:22] -rw------- 1 boinc boinc   1593052 Jul 28 01:41 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:42:22] -rw------- 1 boinc boinc    347939 Jul 28 01:41 log.45743349._006849.job.log.tgz.1
[2025-07-28 01:42:22] -rw------- 1 boinc boinc      7828 Jul 28 01:41 heartbeat.json
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc        29 Jul 28 01:42 wrapper_checkpoint.txt
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc      8192 Jul 28 01:42 boinc_mmap_file
[2025-07-28 01:42:22] -rw------- 1 boinc boinc       822 Jul 28 01:42 pilotlog.txt
[2025-07-28 01:42:22] -rw------- 1 boinc boinc   1389118 Jul 28 01:42 log.45743349._006849.job.log.1
[2025-07-28 01:42:22] -rw------- 1 boinc boinc       357 Jul 28 01:42 output.list
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc       620 Jul 28 01:42 runtime_log
[2025-07-28 01:42:22] -rw------- 1 boinc boinc   1761280 Jul 28 01:42 result.tar.gz
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc      9104 Jul 28 01:42 runtime_log.err
[2025-07-28 01:42:22] -rw------- 1 boinc boinc       790 Jul 28 01:42 QgFLDmYIGz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtWxKDmxmzZKn.diag
[2025-07-28 01:42:22] -rw-r--r-- 1 boinc boinc     22596 Jul 28 01:42 stderr.txt
[2025-07-28 01:42:22] HITS file was successfully produced:
[2025-07-28 01:42:22] -rw------- 1 boinc boinc 201231348 Jul 28 01:41 shared/HITS.pool.root.1
[2025-07-28 01:42:22]  *** Contents of shared directory: ***
[2025-07-28 01:42:22] total 343948
[2025-07-28 01:42:22] -rw-r--r-- 3 boinc boinc 148637804 Jul 27 17:45 ATLAS.root_0
[2025-07-28 01:42:22] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:45 start_atlas.sh
[2025-07-28 01:42:22] -rw-r--r-- 2 boinc boinc    542880 Jul 27 17:45 input.tar.gz
[2025-07-28 01:42:22] -rw------- 1 boinc boinc 201231348 Jul 28 01:41 HITS.pool.root.1
[2025-07-28 01:42:22] -rw------- 1 boinc boinc   1761280 Jul 28 01:42 result.tar.gz
01:42:24 (3404553): run_atlas exited; CPU time 57394.094297
01:42:24 (3404553): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN