Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:11:36 (1605049): wrapper (7.7.26015): starting
18:11:36 (1605049): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 18:11:36] Arguments: --nthreads 8
[2025-07-24 18:11:36] Threads: 8
[2025-07-24 18:11:36] Checking for CVMFS
[2025-07-24 18:11:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 18:11:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 18:11:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 18:11:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 18:11:39] 2.12.6.0 99509 23531 150412 148717 2 166 32482652 40960001 39036 16776704 0 282185228 99.703 228590394 31300 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-24 18:11:39] CVMFS is ok
[2025-07-24 18:11:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 18:11:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 18:11:39] Further information can be found at the LHC@home message board.
[2025-07-24 18:11:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 18:11:39] Checking for apptainer binary...
[2025-07-24 18:11:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 18:11:39] Running /usr/bin/apptainer --version
[2025-07-24 18:11:39] apptainer version 1.4.1-1.el9
[2025-07-24 18:11:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 18:11:40] c8-16-2.aglt2.org
[2025-07-24 18:11:40] apptainer works
[2025-07-24 18:11:40] Set ATHENA_PROC_NUMBER=8
[2025-07-24 18:11:40] Set ATHENA_CORE_NUMBER=8
[2025-07-24 18:11:40] Starting ATLAS job with PandaID=6744915288
[2025-07-24 18:11:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 19:31:33]  *** The last 200 lines of the pilot log: ***
[2025-07-24 19:31:33] 2025-07-24 23:30:36,263 | INFO     | PID=1620080 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-24 19:31:33] 2025-07-24 23:30:36,263 | INFO     | .. there are 43 such processes running
[2025-07-24 19:31:33] 2025-07-24 23:30:36,305 | INFO     | number of running child processes to parent process 1647014: 1
[2025-07-24 19:31:33] 2025-07-24 23:30:36,305 | INFO     | maximum number of monitored processes: 6
[2025-07-24 19:31:33] 2025-07-24 23:30:37,911 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-24 19:31:33] 2025-07-24 23:30:38,812 | INFO     | monitor loop #339: job 0:6744915288 is in state 'finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:38,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 19:31:33] 2025-07-24 23:30:39,760 | INFO     | job 6744915288 has state=finished
[2025-07-24 19:31:33] 2025-07-24 23:30:39,760 | INFO     | preparing for final server update for job 6744915288 in state='finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:39,821 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-24 19:31:33] 2025-07-24 23:30:39,822 | INFO     | this job has now completed (state=finished)
[2025-07-24 19:31:33] 2025-07-24 23:30:39,822 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-24 19:31:33] 2025-07-24 23:30:39,822 | INFO     | log transfer has been attempted: DONE
[2025-07-24 19:31:33] 2025-07-24 23:30:39,822 | INFO     | job 6744915288 has finished - writing final server update
[2025-07-24 19:31:33] 2025-07-24 23:30:39,822 | INFO     | total number of processed events: 400 (read)
[2025-07-24 19:31:33] 2025-07-24 23:30:39,855 | INFO     | executing command: lscpu
[2025-07-24 19:31:33] 2025-07-24 23:30:40,019 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-24 19:31:33] 2025-07-24 23:30:41,319 | INFO     | monitor loop #340: job 0:6744915288 is in state 'finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:41,319 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 19:31:33] 2025-07-24 23:30:43,824 | INFO     | monitor loop #341: job 0:6744915288 is in state 'finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:43,824 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 19:31:33] 2025-07-24 23:30:46,329 | INFO     | monitor loop #342: job 0:6744915288 is in state 'finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:46,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 19:31:33] 2025-07-24 23:30:47,300 | INFO     | 4671s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-24 19:31:33] 2025-07-24 23:30:48,834 | INFO     | monitor loop #343: job 0:6744915288 is in state 'finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:48,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 19:31:33] 2025-07-24 23:30:51,339 | INFO     | monitor loop #344: job 0:6744915288 is in state 'finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:51,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 19:31:33] 2025-07-24 23:30:53,844 | INFO     | monitor loop #345: job 0:6744915288 is in state 'finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:53,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 19:31:33] 2025-07-24 23:30:56,348 | INFO     | monitor loop #346: job 0:6744915288 is in state 'finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:56,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 19:31:33] 2025-07-24 23:30:58,853 | INFO     | monitor loop #347: job 0:6744915288 is in state 'finished'
[2025-07-24 19:31:33] 2025-07-24 23:30:58,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 19:31:33] 2025-07-24 23:30:59,587 | INFO     | PID=1620080 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 19:31:33] 2025-07-24 23:30:59,589 | INFO     | .. there are 43 such processes running
[2025-07-24 19:31:33] 2025-07-24 23:30:59,730 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-24 19:31:33] 2025-07-24 23:30:59,735 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3747.8071875000005
[2025-07-24 19:31:33] 2025-07-24 23:30:59,748 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6744915288/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 19:31:33] 2025-07-24 23:30:59,748 | INFO     | extracted standard info from prmon json
[2025-07-24 19:31:33] 2025-07-24 23:30:59,748 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 19:31:33] 2025-07-24 23:30:59,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 19:31:33] 2025-07-24 23:30:59,748 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 19:31:33] 2025-07-24 23:30:59,748 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 19:31:33] 2025-07-24 23:30:59,749 | INFO     | fitting pss+swap vs Time
[2025-07-24 19:31:33] 2025-07-24 23:30:59,749 | INFO     | sum of square deviations: 89127252.5
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | sum of deviations: -5731457215.0
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | mean x: 1753397677.5
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | mean y: 2462085.1515151514
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | -- intersect: 112757242330.07849
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | intersect: 112757242330.07849
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | chi2: 0.36777447418926357
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | -- intersect: 112757242330.07849
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | current memory leak: -64.31 B/s (using 66 data points, chi2=0.37)
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | could have reported an average CPU frequency of 3767 MHz (6 samples)
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | ..............................
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | . Timing measurements:
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | . get job = 0 s
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | . initial setup = 8 s
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | . payload setup = 95 s
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | . stage-in = 0 s
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | . payload execution = 4474 s
[2025-07-24 19:31:33] 2025-07-24 23:30:59,750 | INFO     | . stage-out = 1 s
[2025-07-24 19:31:33] 2025-07-24 23:30:59,751 | INFO     | . log creation = 0 s
[2025-07-24 19:31:33] 2025-07-24 23:30:59,751 | INFO     | ..............................
[2025-07-24 19:31:33] 2025-07-24 23:30:59,800 | INFO     | 
[2025-07-24 19:31:33] 2025-07-24 23:30:59,800 | INFO     | job summary report
[2025-07-24 19:31:33] 2025-07-24 23:30:59,800 | INFO     | --------------------------------------------------
[2025-07-24 19:31:33] 2025-07-24 23:30:59,800 | INFO     | PanDA job id: 6744915288
[2025-07-24 19:31:33] 2025-07-24 23:30:59,800 | INFO     | task id: 45743349
[2025-07-24 19:31:33] 2025-07-24 23:30:59,800 | INFO     | errors: (none)
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | pilot state: finished 
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | transexitcode: 0
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | exeerrorcode: 0
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | exeerrordiag: 
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | exitcode: 0
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | exitmsg: OK
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | cpuconsumptiontime: 24747 s
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | nevents: 400
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | neventsw: 0
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | pid: 1647014
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | pgrp: 1647014
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | corecount: 8
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | event service: False
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | sizes: {0: 2397243, 1: 2397498, 12: 2397498, 23: 2397526, 34: 2397554, 37: 2397844, 45: 2398000, 4573: 2424161, 4574: 2424160, 4576: 2433214, 4578: 2433270, 4600: 
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | --------------------------------------------------
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | 
[2025-07-24 19:31:33] 2025-07-24 23:30:59,801 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-24 19:31:33] 2025-07-24 23:30:59,905 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 19:31:33] 2025-07-24 23:30:59,908 | INFO     | job 6744915288 has completed (purged errors)
[2025-07-24 19:31:33] 2025-07-24 23:30:59,908 | INFO     | overall cleanup function is called
[2025-07-24 19:31:33] 2025-07-24 23:31:00,926 | INFO     | --- collectZombieJob: --- 10, [1647014]
[2025-07-24 19:31:33] 2025-07-24 23:31:00,926 | INFO     | zombie collector waiting for pid 1647014
[2025-07-24 19:31:33] 2025-07-24 23:31:00,926 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 19:31:33] 2025-07-24 23:31:00,926 | INFO     | collected zombie processes
[2025-07-24 19:31:33] 2025-07-24 23:31:00,926 | INFO     | will attempt to kill all subprocesses of pid=1647014
[2025-07-24 19:31:33] 2025-07-24 23:31:01,615 | INFO     | process IDs to be killed: [1647014] (in reverse order)
[2025-07-24 19:31:33] 2025-07-24 23:31:01,800 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 19:31:33] 2025-07-24 23:31:01,800 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 19:31:33] 2025-07-24 23:31:01,830 | INFO     | did not find any defunct processes belonging to 1647014
[2025-07-24 19:31:33] 2025-07-24 23:31:01,857 | INFO     | did not find any defunct processes belonging to 1647014
[2025-07-24 19:31:33] 2025-07-24 23:31:01,857 | INFO     | ready for new job
[2025-07-24 19:31:33] 2025-07-24 23:31:01,857 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 19:31:33] 2025-07-24 23:31:01,859 | INFO     | ***************************************
[2025-07-24 19:31:33] 2025-07-24 23:31:01,860 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 19:31:33] 2025-07-24 23:31:01,860 | INFO     | ***************************************
[2025-07-24 19:31:33] 2025-07-24 23:31:01,860 | INFO     | 
[2025-07-24 19:31:33] 2025-07-24 23:31:01,880 | INFO     | architecture information:
[2025-07-24 19:31:33] 2025-07-24 23:31:01,880 | INFO     | executing command: cat /etc/os-release
[2025-07-24 19:31:33] 2025-07-24 23:31:01,894 | INFO     | cat /etc/os-release:
[2025-07-24 19:31:33] NAME="CentOS Linux"
[2025-07-24 19:31:33] VERSION="7 (Core)"
[2025-07-24 19:31:33] ID="centos"
[2025-07-24 19:31:33] ID_LIKE="rhel fedora"
[2025-07-24 19:31:33] VERSION_ID="7"
[2025-07-24 19:31:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 19:31:33] ANSI_COLOR="0;31"
[2025-07-24 19:31:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 19:31:33] HOME_URL="https://www.centos.org/"
[2025-07-24 19:31:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 19:31:33] 
[2025-07-24 19:31:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 19:31:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 19:31:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 19:31:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 19:31:33] 
[2025-07-24 19:31:33] 2025-07-24 23:31:01,894 | INFO     | ***************************************
[2025-07-24 19:31:33] 2025-07-24 23:31:02,397 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-24 19:31:33] 2025-07-24 23:31:02,481 | INFO     | sufficient remaining disk space (172645941248 B)
[2025-07-24 19:31:33] 2025-07-24 23:31:02,481 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 19:31:33] 2025-07-24 23:31:02,481 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 19:31:33] 2025-07-24 23:31:02,481 | INFO     | update_server=False
[2025-07-24 19:31:33] 2025-07-24 23:31:02,481 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 19:31:33] 2025-07-24 23:31:02,482 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 19:31:33] 2025-07-24 23:31:02,486 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 19:31:33] 2025-07-24 23:31:02,486 | INFO     | aborting loop
[2025-07-24 19:31:33] 2025-07-24 23:31:02,647 | INFO     | all data control threads have been joined
[2025-07-24 19:31:33] 2025-07-24 23:31:03,184 | INFO     | all payload control threads have been joined
[2025-07-24 19:31:33] 2025-07-24 23:31:03,487 | INFO     | [job] retrieve thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:03,492 | INFO     | [job] job monitor thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:03,653 | INFO     | [data] control thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:03,751 | INFO     | all job control threads have been joined
[2025-07-24 19:31:33] 2025-07-24 23:31:03,892 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 19:31:33] 2025-07-24 23:31:03,982 | INFO     | [payload] validate_post thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:04,191 | INFO     | [payload] control thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:04,433 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:04,581 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:04,756 | INFO     | [job] validate thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:04,757 | INFO     | [job] control thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:04,786 | INFO     | [payload] failed_post thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:04,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 19:31:33] 2025-07-24 23:31:04,940 | INFO     | [data] copytool_in thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:04,966 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:05,825 | INFO     | [job] queue monitor thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:05,899 | INFO     | [data] copytool_out thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:06,490 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:13,212 | INFO     | job.realtimelogging is not enabled
[2025-07-24 19:31:33] 2025-07-24 23:31:14,218 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 19:31:33] 2025-07-24 23:31:15,868 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140487328749376)>', '<ExcThread(monitor, started 140486685742848)>']
[2025-07-24 19:31:33] 2025-07-24 23:31:20,894 | INFO     | all workflow threads have been joined
[2025-07-24 19:31:33] 2025-07-24 23:31:20,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 19:31:33] 2025-07-24 23:31:20,894 | INFO     | traces error code: 0
[2025-07-24 19:31:33] 2025-07-24 23:31:20,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 19:31:33] 2025-07-24 23:31:32,354 | INFO     | PID=1620080 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 19:31:33] 2025-07-24 23:31:32,356 | INFO     | .. there are 43 such processes running
[2025-07-24 19:31:33] 2025-07-24 23:31:32,356 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 19:31:33] 2025-07-24 23:31:32,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 19:31:33] 2025-07-24 23:31:32,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 19:31:33] 2025-07-24 23:31:32,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 19:31:33] 2025-07-24 23:31:32,357 | INFO     | [monitor] control thread has ended
[2025-07-24 19:31:33] 2025-07-24 23:31:32,564 [wrapper] ==== pilot stdout END ====
[2025-07-24 19:31:33] 2025-07-24 23:31:32,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 19:31:33] 2025-07-24 23:31:32,652 [wrapper] pilotpid: 1620080
[2025-07-24 19:31:33] 2025-07-24 23:31:32,672 [wrapper] Pilot exit status: 0
[2025-07-24 19:31:33] 2025-07-24 23:31:32,779 [wrapper] pandaids: 6744915288
[2025-07-24 19:31:33] 2025-07-24 23:31:32,920 [wrapper] cleanup supervisor_pilot 2583261 1620081
[2025-07-24 19:31:33] 2025-07-24 23:31:32,926 [wrapper] Test setup, not cleaning
[2025-07-24 19:31:33] 2025-07-24 23:31:32,935 [wrapper] apfmon messages muted
[2025-07-24 19:31:33] 2025-07-24 23:31:32,943 [wrapper] ==== wrapper stdout END ====
[2025-07-24 19:31:33] 2025-07-24 23:31:32,952 [wrapper] ==== wrapper stderr END ====
[2025-07-24 19:31:33]  *** Error codes and diagnostics ***
[2025-07-24 19:31:33]     "exeErrorCode": 0,
[2025-07-24 19:31:33]     "exeErrorDiag": "",
[2025-07-24 19:31:33]     "pilotErrorCode": 0,
[2025-07-24 19:31:33]     "pilotErrorDiag": "",
[2025-07-24 19:31:33]  *** Listing of results directory ***
[2025-07-24 19:31:33] total 428036
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 14:18 pilot3.tar.gz
[2025-07-24 19:31:33] -rwx------. 1 boincer umatlas     36292 Jul 24 14:21 runpilot2-wrapper.sh
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 14:21 queuedata.json
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas       100 Jul 24 18:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 19:31:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 24 18:11 run_atlas
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas       105 Jul 24 18:11 job.xml
[2025-07-24 19:31:33] -rw-r--r--. 2 boincer umatlas 233004404 Jul 24 18:11 EVNT.45743347._000257.pool.root.1
[2025-07-24 19:31:33] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 18:11 start_atlas.sh
[2025-07-24 19:31:33] drwxrwx--x. 2 boincer umatlas      4096 Jul 24 18:11 shared
[2025-07-24 19:31:33] -rw-r--r--. 2 boincer umatlas    542888 Jul 24 18:11 input.tar.gz
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas         0 Jul 24 18:11 boinc_lockfile
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas      2561 Jul 24 18:11 pandaJob.out
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas    979701 Jul 24 18:12 agis_schedconf.cvmfs.json
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas   1593052 Jul 24 18:12 agis_ddmendpoints.agis.ALL.json
[2025-07-24 19:31:33] drwx------. 4 boincer umatlas      4096 Jul 24 18:13 pilot3
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas 199932258 Jul 24 19:30 HITS.45743349._004654.pool.root.1
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas       529 Jul 24 19:30 boinc_task_state.xml
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas      1037 Jul 24 19:30 memory_monitor_summary.json
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas    312493 Jul 24 19:30 log.45743349._004654.job.log.tgz.1
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas      7782 Jul 24 19:30 heartbeat.json
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas      7162 Jul 24 19:31 init_data.xml
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas      8192 Jul 24 19:31 boinc_mmap_file
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas        27 Jul 24 19:31 wrapper_checkpoint.txt
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas        95 Jul 24 19:31 pilot_heartbeat.json
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas       823 Jul 24 19:31 pilotlog.txt
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas    435982 Jul 24 19:31 log.45743349._004654.job.log.1
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas       357 Jul 24 19:31 output.list
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas       620 Jul 24 19:31 runtime_log
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas    768000 Jul 24 19:31 result.tar.gz
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas       652 Jul 24 19:31 sNGMDmbkFz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwuMLDmHIGqin.diag
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas      8655 Jul 24 19:31 runtime_log.err
[2025-07-24 19:31:33] -rw-r--r--. 1 boincer umatlas     22438 Jul 24 19:31 stderr.txt
[2025-07-24 19:31:33] HITS file was successfully produced:
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas 199932258 Jul 24 19:30 shared/HITS.pool.root.1
[2025-07-24 19:31:33]  *** Contents of shared directory: ***
[2025-07-24 19:31:33] total 424096
[2025-07-24 19:31:33] -rw-r--r--. 2 boincer umatlas 233004404 Jul 24 18:11 ATLAS.root_0
[2025-07-24 19:31:33] -rw-r--r--. 2 boincer umatlas     15095 Jul 24 18:11 start_atlas.sh
[2025-07-24 19:31:33] -rw-r--r--. 2 boincer umatlas    542888 Jul 24 18:11 input.tar.gz
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas 199932258 Jul 24 19:30 HITS.pool.root.1
[2025-07-24 19:31:33] -rw-------. 1 boincer umatlas    768000 Jul 24 19:31 result.tar.gz
19:31:35 (1605049): run_atlas exited; CPU time 24887.730326
19:31:35 (1605049): called boinc_finish(0)

</stderr_txt>
]]>

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