Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:45:40 (2876306): wrapper (7.7.26015): starting
16:45:40 (2876306): wrapper: running run_atlas (--nthreads 12)
[2025-07-29 16:45:40] Arguments: --nthreads 12
[2025-07-29 16:45:40] Threads: 12
[2025-07-29 16:45:40] Checking for CVMFS
[2025-07-29 16:45:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 16:45:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 16:45:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 16:45:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 16:45:41] 2.13.0.0 2216046 1259 50604 148893 1 188 3889367 4096000 868 130560 0 1786956 99.993 46706 110 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-29 16:45:41] CVMFS is ok
[2025-07-29 16:45:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 16:45:41] Checking for apptainer binary...
[2025-07-29 16:45:41] apptainer is not installed, using version from CVMFS
[2025-07-29 16:45:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 16:45:41] dualxeon2
[2025-07-29 16:45:41] apptainer works
[2025-07-29 16:45:41] Set ATHENA_PROC_NUMBER=12
[2025-07-29 16:45:41] Set ATHENA_CORE_NUMBER=12
[2025-07-29 16:45:41] Starting ATLAS job with PandaID=6744930150
[2025-07-29 16:45:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31418/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 18:25:21]  *** The last 200 lines of the pilot log: ***
[2025-07-29 18:25:21]  mtime=0
[2025-07-29 18:25:21]  protocol_id=None
[2025-07-29 18:25:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-29 18:25:21]  replicas=None
[2025-07-29 18:25:21]  scope=mc23_13p6TeV
[2025-07-29 18:25:21]  status=None
[2025-07-29 18:25:21]  status_code=0
[2025-07-29 18:25:21]  storage_token=
[2025-07-29 18:25:21]  surl=/opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6744930150/log.45743349._008925.job.log.tgz.1
[2025-07-29 18:25:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/18/97/log.45743349._008925.job.log.tgz.1
[2025-07-29 18:25:21]  workdir=None
[2025-07-29 18:25:21] ]
[2025-07-29 18:25:21] 2025-07-29 18:24:40,346 | INFO     | transferring file log.45743349._008925.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6744930150/log.45743349._008925.job.log.tgz.1 t
[2025-07-29 18:25:21] 2025-07-29 18:24:40,347 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6744930150/log.45743349._008925.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-29 18:25:21] 2025-07-29 18:24:40,367 | INFO     | adding to output.list: log.45743349._008925.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/18/97/log.45743349._008925.job.log.tg
[2025-07-29 18:25:21] 2025-07-29 18:24:40,368 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-29 18:25:21] 2025-07-29 18:24:40,368 | INFO     | summary of transferred files:
[2025-07-29 18:25:21] 2025-07-29 18:24:40,368 | INFO     |  -- lfn=log.45743349._008925.job.log.tgz.1, status_code=0, status=transferred
[2025-07-29 18:25:21] 2025-07-29 18:24:40,369 | INFO     | stage-out finished correctly
[2025-07-29 18:25:21] 2025-07-29 18:24:42,243 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-29 18:25:21] 2025-07-29 18:24:44,104 | WARNING  | process 2886762 can no longer be monitored (due to stat problems) - aborting
[2025-07-29 18:25:21] 2025-07-29 18:24:44,104 | INFO     | using path: /opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6744930150/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 18:25:21] 2025-07-29 18:24:44,219 | INFO     | number of running child processes to parent process 2886762: 1
[2025-07-29 18:25:21] 2025-07-29 18:24:44,219 | INFO     | maximum number of monitored processes: 6
[2025-07-29 18:25:21] 2025-07-29 18:24:44,339 | INFO     | job 6744930150 has state=finished
[2025-07-29 18:25:21] 2025-07-29 18:24:44,339 | INFO     | preparing for final server update for job 6744930150 in state='finished'
[2025-07-29 18:25:21] 2025-07-29 18:24:44,340 | INFO     | this job has now completed (state=finished)
[2025-07-29 18:25:21] 2025-07-29 18:24:44,340 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-29 18:25:21] 2025-07-29 18:24:44,340 | INFO     | log transfer has been attempted: DONE
[2025-07-29 18:25:21] 2025-07-29 18:24:44,340 | INFO     | job 6744930150 has finished - writing final server update
[2025-07-29 18:25:21] 2025-07-29 18:24:44,341 | INFO     | total number of processed events: 400 (read)
[2025-07-29 18:25:21] 2025-07-29 18:24:44,342 | INFO     | executing command: lscpu
[2025-07-29 18:25:21] 2025-07-29 18:24:44,376 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-29 18:25:21] 2025-07-29 18:24:46,721 | INFO     | monitor loop #438: job 0:6744930150 is in state 'finished'
[2025-07-29 18:25:21] 2025-07-29 18:24:46,722 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 18:25:21] 2025-07-29 18:24:47,991 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-29 18:25:21] 2025-07-29 18:24:47,998 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 1938.9281562499998
[2025-07-29 18:25:21] 2025-07-29 18:24:48,007 | INFO     | using path: /opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6744930150/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 18:25:21] 2025-07-29 18:24:48,008 | INFO     | extracted standard info from prmon json
[2025-07-29 18:25:21] 2025-07-29 18:24:48,008 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 18:25:21] 2025-07-29 18:24:48,008 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 18:25:21] 2025-07-29 18:24:48,009 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 18:25:21] 2025-07-29 18:24:48,009 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 18:25:21] 2025-07-29 18:24:48,012 | INFO     | fitting pss+swap vs Time
[2025-07-29 18:25:21] 2025-07-29 18:24:48,013 | INFO     | sum of square deviations: 226022842.5
[2025-07-29 18:25:21] 2025-07-29 18:24:48,013 | INFO     | sum of deviations: -7231497631.500001
[2025-07-29 18:25:21] 2025-07-29 18:24:48,014 | INFO     | mean x: 1753810596.5
[2025-07-29 18:25:21] 2025-07-29 18:24:48,014 | INFO     | mean y: 2743132.4111111113
[2025-07-29 18:25:21] 2025-07-29 18:24:48,014 | INFO     | -- intersect: 56115112282.39803
[2025-07-29 18:25:21] 2025-07-29 18:24:48,014 | INFO     | intersect: 56115112282.39803
[2025-07-29 18:25:21] 2025-07-29 18:24:48,014 | INFO     | chi2: 0.06901398748235354
[2025-07-29 18:25:21] 2025-07-29 18:24:48,015 | INFO     | -- intersect: 56115112282.39803
[2025-07-29 18:25:21] 2025-07-29 18:24:48,015 | INFO     | current memory leak: -31.99 B/s (using 90 data points, chi2=0.07)
[2025-07-29 18:25:21] 2025-07-29 18:24:48,015 | INFO     | could have reported an average CPU frequency of 2315 MHz (7 samples)
[2025-07-29 18:25:21] 2025-07-29 18:24:48,016 | INFO     | ..............................
[2025-07-29 18:25:21] 2025-07-29 18:24:48,016 | INFO     | . Timing measurements:
[2025-07-29 18:25:21] 2025-07-29 18:24:48,016 | INFO     | . get job = 0 s
[2025-07-29 18:25:21] 2025-07-29 18:24:48,016 | INFO     | . initial setup = 1 s
[2025-07-29 18:25:21] 2025-07-29 18:24:48,016 | INFO     | . payload setup = 6 s
[2025-07-29 18:25:21] 2025-07-29 18:24:48,016 | INFO     | . stage-in = 0 s
[2025-07-29 18:25:21] 2025-07-29 18:24:48,016 | INFO     | . payload execution = 5903 s
[2025-07-29 18:25:21] 2025-07-29 18:24:48,017 | INFO     | . stage-out = 0 s
[2025-07-29 18:25:21] 2025-07-29 18:24:48,017 | INFO     | . log creation = 0 s
[2025-07-29 18:25:21] 2025-07-29 18:24:48,017 | INFO     | ..............................
[2025-07-29 18:25:21] 2025-07-29 18:24:48,460 | INFO     | 
[2025-07-29 18:25:21] 2025-07-29 18:24:48,460 | INFO     | job summary report
[2025-07-29 18:25:21] 2025-07-29 18:24:48,460 | INFO     | --------------------------------------------------
[2025-07-29 18:25:21] 2025-07-29 18:24:48,460 | INFO     | PanDA job id: 6744930150
[2025-07-29 18:25:21] 2025-07-29 18:24:48,460 | INFO     | task id: 45743349
[2025-07-29 18:25:21] 2025-07-29 18:24:48,460 | INFO     | errors: (none)
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | pilot state: finished 
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | transexitcode: 0
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | exeerrorcode: 0
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | exeerrordiag: 
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | exitcode: 0
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | exitmsg: OK
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | cpuconsumptiontime: 59498 s
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | nevents: 400
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | neventsw: 0
[2025-07-29 18:25:21] 2025-07-29 18:24:48,461 | INFO     | pid: 2886762
[2025-07-29 18:25:21] 2025-07-29 18:24:48,462 | INFO     | pgrp: 2886762
[2025-07-29 18:25:21] 2025-07-29 18:24:48,462 | INFO     | corecount: 12
[2025-07-29 18:25:21] 2025-07-29 18:24:48,462 | INFO     | event service: False
[2025-07-29 18:25:21] 2025-07-29 18:24:48,462 | INFO     | sizes: {0: 2391753, 1: 2391952, 5: 2392214, 12: 2392270, 5914: 2428096, 5916: 2428096, 5922: 2428418}
[2025-07-29 18:25:21] 2025-07-29 18:24:48,462 | INFO     | --------------------------------------------------
[2025-07-29 18:25:21] 2025-07-29 18:24:48,462 | INFO     | 
[2025-07-29 18:25:21] 2025-07-29 18:24:48,462 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31418/slots/2
[2025-07-29 18:25:21] 2025-07-29 18:24:48,485 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,485 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,485 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,486 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,486 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,486 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,486 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,486 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,486 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,486 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,487 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,487 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 18:25:21] 2025-07-29 18:24:48,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,488 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 18:25:21] 2025-07-29 18:24:48,488 | INFO     | job 6744930150 has completed (purged errors)
[2025-07-29 18:25:21] 2025-07-29 18:24:48,488 | INFO     | overall cleanup function is called
[2025-07-29 18:25:21] 2025-07-29 18:24:49,498 | INFO     | --- collectZombieJob: --- 10, [2886762]
[2025-07-29 18:25:21] 2025-07-29 18:24:49,499 | INFO     | zombie collector waiting for pid 2886762
[2025-07-29 18:25:21] 2025-07-29 18:24:49,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 18:25:21] 2025-07-29 18:24:49,505 | INFO     | collected zombie processes
[2025-07-29 18:25:21] 2025-07-29 18:24:49,505 | INFO     | will attempt to kill all subprocesses of pid=2886762
[2025-07-29 18:25:21] 2025-07-29 18:24:49,612 | INFO     | process IDs to be killed: [2886762] (in reverse order)
[2025-07-29 18:25:21] 2025-07-29 18:24:49,667 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 18:25:21] 2025-07-29 18:24:49,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 18:25:21] 2025-07-29 18:24:49,673 | INFO     | did not find any defunct processes belonging to 2886762
[2025-07-29 18:25:21] 2025-07-29 18:24:49,679 | INFO     | did not find any defunct processes belonging to 2886762
[2025-07-29 18:25:21] 2025-07-29 18:24:49,679 | INFO     | ready for new job
[2025-07-29 18:25:21] 2025-07-29 18:24:49,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 18:25:21] 2025-07-29 18:24:49,681 | INFO     | ***************************************
[2025-07-29 18:25:21] 2025-07-29 18:24:49,682 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 18:25:21] 2025-07-29 18:24:49,682 | INFO     | ***************************************
[2025-07-29 18:25:21] 2025-07-29 18:24:49,682 | INFO     | 
[2025-07-29 18:25:21] 2025-07-29 18:24:49,684 | INFO     | architecture information:
[2025-07-29 18:25:21] 2025-07-29 18:24:49,685 | INFO     | executing command: cat /etc/os-release
[2025-07-29 18:25:21] 2025-07-29 18:24:49,704 | INFO     | cat /etc/os-release:
[2025-07-29 18:25:21] NAME="CentOS Linux"
[2025-07-29 18:25:21] VERSION="7 (Core)"
[2025-07-29 18:25:21] ID="centos"
[2025-07-29 18:25:21] ID_LIKE="rhel fedora"
[2025-07-29 18:25:21] VERSION_ID="7"
[2025-07-29 18:25:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 18:25:21] ANSI_COLOR="0;31"
[2025-07-29 18:25:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 18:25:21] HOME_URL="https://www.centos.org/"
[2025-07-29 18:25:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 18:25:21] 
[2025-07-29 18:25:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 18:25:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 18:25:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 18:25:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 18:25:21] 
[2025-07-29 18:25:21] 2025-07-29 18:24:49,705 | INFO     | ***************************************
[2025-07-29 18:25:21] 2025-07-29 18:24:50,208 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31418/slots/2
[2025-07-29 18:25:21] 2025-07-29 18:24:50,229 | INFO     | sufficient remaining disk space (62242422784 B)
[2025-07-29 18:25:21] 2025-07-29 18:24:50,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 18:25:21] 2025-07-29 18:24:50,230 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 18:25:21] 2025-07-29 18:24:50,230 | INFO     | update_server=False
[2025-07-29 18:25:21] 2025-07-29 18:24:50,230 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 18:25:21] 2025-07-29 18:24:50,230 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 18:25:21] 2025-07-29 18:24:50,231 | INFO     | aborting loop
[2025-07-29 18:25:21] 2025-07-29 18:24:50,278 | INFO     | all data control threads have been joined
[2025-07-29 18:25:21] 2025-07-29 18:24:50,596 | INFO     | all payload control threads have been joined
[2025-07-29 18:25:21] 2025-07-29 18:24:50,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 18:25:21] 2025-07-29 18:24:51,235 | INFO     | [job] retrieve thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:51,236 | INFO     | [job] job monitor thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:51,279 | INFO     | [data] control thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:51,377 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:51,507 | INFO     | all job control threads have been joined
[2025-07-29 18:25:21] 2025-07-29 18:24:51,597 | INFO     | [payload] control thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:51,627 | INFO     | [job] validate thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:51,752 | INFO     | [payload] failed_post thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:51,765 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:51,856 | INFO     | [payload] validate_post thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:52,512 | INFO     | [job] control thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:52,562 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:52,644 | INFO     | [data] copytool_in thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:52,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 18:25:21] 2025-07-29 18:24:52,953 | INFO     | [data] copytool_out thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:53,123 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 18:25:21] 2025-07-29 18:24:54,128 | INFO     | [job] queue monitor thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:24:56,851 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:25:00,764 | INFO     | job.realtimelogging is not enabled
[2025-07-29 18:25:21] 2025-07-29 18:25:01,769 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 18:25:21] 2025-07-29 18:25:02,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138153494198080)>', '<ExcThread(monitor, started 138152656238336)>']
[2025-07-29 18:25:21] 2025-07-29 18:25:07,654 | INFO     | all workflow threads have been joined
[2025-07-29 18:25:21] 2025-07-29 18:25:07,655 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 18:25:21] 2025-07-29 18:25:07,655 | INFO     | traces error code: 0
[2025-07-29 18:25:21] 2025-07-29 18:25:07,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 18:25:21] 2025-07-29 18:25:21,452 | INFO     | PID=2880065 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-29 18:25:21] 2025-07-29 18:25:21,453 | INFO     | .. there are 2 such processes running
[2025-07-29 18:25:21] 2025-07-29 18:25:21,453 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 18:25:21] 2025-07-29 18:25:21,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 18:25:21] 2025-07-29 18:25:21,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 18:25:21] 2025-07-29 18:25:21,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 18:25:21] 2025-07-29 18:25:21,453 | CRITICAL | thread 'MainThread' is not alive
[2025-07-29 18:25:21] 2025-07-29 18:25:21,453 | INFO     | [monitor] control thread has ended
[2025-07-29 18:25:21] 2025-07-29 18:25:21,601 [wrapper] ==== pilot stdout END ====
[2025-07-29 18:25:21] 2025-07-29 18:25:21,604 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 18:25:21] 2025-07-29 18:25:21,607 [wrapper] pilotpid: 2880065
[2025-07-29 18:25:21] 2025-07-29 18:25:21,612 [wrapper] Pilot exit status: 0
[2025-07-29 18:25:21] 2025-07-29 18:25:21,622 [wrapper] pandaids: 6744930150
[2025-07-29 18:25:21] 2025-07-29 18:25:21,647 [wrapper] cleanup supervisor_pilot 2905459 2880066
[2025-07-29 18:25:21] 2025-07-29 18:25:21,651 [wrapper] Test setup, not cleaning
[2025-07-29 18:25:21] 2025-07-29 18:25:21,654 [wrapper] apfmon messages muted
[2025-07-29 18:25:21] 2025-07-29 18:25:21,658 [wrapper] ==== wrapper stdout END ====
[2025-07-29 18:25:21] 2025-07-29 18:25:21,661 [wrapper] ==== wrapper stderr END ====
[2025-07-29 18:25:21]  *** Error codes and diagnostics ***
[2025-07-29 18:25:21]     "exeErrorCode": 0,
[2025-07-29 18:25:21]     "exeErrorDiag": "",
[2025-07-29 18:25:21]     "pilotErrorCode": 0,
[2025-07-29 18:25:21]     "pilotErrorDiag": "",
[2025-07-29 18:25:21]  *** Listing of results directory ***
[2025-07-29 18:25:21] total 344992
[2025-07-29 18:25:21] -rw-r--r-- 1 boinc boinc    530466 Jul 24 20:13 pilot3.tar.gz
[2025-07-29 18:25:21] -rwx------ 1 boinc boinc     36292 Jul 24 20:19 runpilot2-wrapper.sh
[2025-07-29 18:25:21] -rw-r--r-- 1 boinc boinc      5112 Jul 24 20:19 queuedata.json
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc       100 Jul 29 16:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 18:25:21] -rwxr-xr-x 1 boinc boinc      7986 Jul 29 16:45 run_atlas
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc       105 Jul 29 16:45 job.xml
[2025-07-29 18:25:21] -rw-r--r-- 2 boinc boinc 145749784 Jul 29 16:45 EVNT.45743347._000477.pool.root.1
[2025-07-29 18:25:21] -rw-r--r-- 2 boinc boinc     15095 Jul 29 16:45 start_atlas.sh
[2025-07-29 18:25:21] drwxrwx--x 2 boinc boinc      4096 Jul 29 16:45 shared
[2025-07-29 18:25:21] -rw-r--r-- 2 boinc boinc    542871 Jul 29 16:45 input.tar.gz
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc      6595 Jul 29 16:45 init_data.xml
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc         0 Jul 29 16:45 boinc_lockfile
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc      2559 Jul 29 16:45 pandaJob.out
[2025-07-29 18:25:21] -rw------- 1 boinc boinc    977324 Jul 29 16:45 agis_schedconf.cvmfs.json
[2025-07-29 18:25:21] -rw------- 1 boinc boinc   1589827 Jul 29 16:45 agis_ddmendpoints.agis.ALL.json
[2025-07-29 18:25:21] drwx------ 4 boinc boinc      4096 Jul 29 16:45 pilot3
[2025-07-29 18:25:21] -rw------- 1 boinc boinc 201733972 Jul 29 18:24 HITS.45743349._008925.pool.root.1
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc       529 Jul 29 18:24 boinc_task_state.xml
[2025-07-29 18:25:21] -rw------- 1 boinc boinc      1022 Jul 29 18:24 memory_monitor_summary.json
[2025-07-29 18:25:21] -rw------- 1 boinc boinc    365645 Jul 29 18:24 log.45743349._008925.job.log.tgz.1
[2025-07-29 18:25:21] -rw------- 1 boinc boinc        95 Jul 29 18:24 pilot_heartbeat.json
[2025-07-29 18:25:21] -rw------- 1 boinc boinc      7773 Jul 29 18:24 heartbeat.json
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc        27 Jul 29 18:25 wrapper_checkpoint.txt
[2025-07-29 18:25:21] -rw------- 1 boinc boinc       892 Jul 29 18:25 pilotlog.txt
[2025-07-29 18:25:21] -rw------- 1 boinc boinc    590933 Jul 29 18:25 log.45743349._008925.job.log.1
[2025-07-29 18:25:21] -rw------- 1 boinc boinc       357 Jul 29 18:25 output.list
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc       620 Jul 29 18:25 runtime_log
[2025-07-29 18:25:21] -rw------- 1 boinc boinc    972800 Jul 29 18:25 result.tar.gz
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc      8192 Jul 29 18:25 boinc_mmap_file
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc      8969 Jul 29 18:25 runtime_log.err
[2025-07-29 18:25:21] -rw------- 1 boinc boinc       653 Jul 29 18:25 dsQLDmFaHz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIZNLDm89qVRm.diag
[2025-07-29 18:25:21] -rw-rw-r-- 1 boinc boinc     21527 Jul 29 18:25 stderr.txt
[2025-07-29 18:25:21] HITS file was successfully produced:
[2025-07-29 18:25:21] -rw------- 1 boinc boinc 201733972 Jul 29 18:24 shared/HITS.pool.root.1
[2025-07-29 18:25:21]  *** Contents of shared directory: ***
[2025-07-29 18:25:21] total 340852
[2025-07-29 18:25:21] -rw-r--r-- 2 boinc boinc 145749784 Jul 29 16:45 ATLAS.root_0
[2025-07-29 18:25:21] -rw-r--r-- 2 boinc boinc     15095 Jul 29 16:45 start_atlas.sh
[2025-07-29 18:25:21] -rw-r--r-- 2 boinc boinc    542871 Jul 29 16:45 input.tar.gz
[2025-07-29 18:25:21] -rw------- 1 boinc boinc 201733972 Jul 29 18:24 HITS.pool.root.1
[2025-07-29 18:25:21] -rw------- 1 boinc boinc    972800 Jul 29 18:25 result.tar.gz
18:25:23 (2876306): run_atlas exited; CPU time 59538.831045
18:25:23 (2876306): called boinc_finish(0)

</stderr_txt>
]]>

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