Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:52:13 (3765518): wrapper (7.7.26015): starting
17:52:13 (3765518): wrapper: running run_atlas (--nthreads 10)
[2025-07-25 17:52:13] Arguments: --nthreads 10
[2025-07-25 17:52:13] Threads: 10
[2025-07-25 17:52:13] Checking for CVMFS
[2025-07-25 17:52:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 17:52:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 17:52:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 17:52:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 17:52:13] 2.12.6.0 705810 16066 284920 148754 2 389 28701213 32935936 12988 16776704 1 55640513 99.582 64974897 27579 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 17:52:13] CVMFS is ok
[2025-07-25 17:52:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 17:52:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 17:52:13] Further information can be found at the LHC@home message board.
[2025-07-25 17:52:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 17:52:13] Checking for apptainer binary...
[2025-07-25 17:52:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 17:52:13] Running /usr/bin/apptainer --version
[2025-07-25 17:52:13] apptainer version 1.4.1-1.el9
[2025-07-25 17:52:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 17:52:14] c-8-16.aglt2.org
[2025-07-25 17:52:14] apptainer works
[2025-07-25 17:52:14] Set ATHENA_PROC_NUMBER=10
[2025-07-25 17:52:14] Set ATHENA_CORE_NUMBER=10
[2025-07-25 17:52:14] Starting ATLAS job with PandaID=6744926244
[2025-07-25 17:52:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:10:21 (3826105): wrapper (7.7.26015): starting
18:10:21 (3826105): wrapper: running run_atlas (--nthreads 10)
[2025-07-25 18:10:21] Arguments: --nthreads 10
[2025-07-25 18:10:21] Threads: 10
[2025-07-25 18:10:21] This job has been restarted, cleaning up previous attempt
[2025-07-25 18:10:21] Checking for CVMFS
[2025-07-25 18:10:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 18:10:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 18:10:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 18:10:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 18:10:22] 2.12.6.0 705810 16084 269612 148755 0 14 29498966 32935936 12591 16776704 1 55701088 99.576 65248772 27251 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 18:10:22] CVMFS is ok
[2025-07-25 18:10:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 18:10:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 18:10:22] Further information can be found at the LHC@home message board.
[2025-07-25 18:10:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 18:10:22] Checking for apptainer binary...
[2025-07-25 18:10:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 18:10:22] Running /usr/bin/apptainer --version
[2025-07-25 18:10:22] apptainer version 1.4.1-1.el9
[2025-07-25 18:10:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 18:10:22] c-8-16.aglt2.org
[2025-07-25 18:10:22] apptainer works
[2025-07-25 18:10:22] Set ATHENA_PROC_NUMBER=10
[2025-07-25 18:10:22] Set ATHENA_CORE_NUMBER=10
[2025-07-25 18:10:22] Starting ATLAS job with PandaID=6744926244
[2025-07-25 18:10:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 20:54:39]  *** The last 200 lines of the pilot log: ***
[2025-07-25 20:54:39] 2025-07-26 00:54:06,662 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 20:54:39] 2025-07-26 00:54:06,663 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 20:54:39] 2025-07-26 00:54:06,663 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 20:54:39] 2025-07-26 00:54:06,663 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 20:54:39] 2025-07-26 00:54:06,667 | INFO     | fitting pss+swap vs Time
[2025-07-25 20:54:39] 2025-07-26 00:54:06,668 | INFO     | sum of square deviations: 1294118815.7763927
[2025-07-25 20:54:39] 2025-07-26 00:54:06,669 | INFO     | sum of deviations: -1816798799.3726683
[2025-07-25 20:54:39] 2025-07-26 00:54:06,669 | INFO     | mean x: 1753486340.1801243
[2025-07-25 20:54:39] 2025-07-26 00:54:06,669 | INFO     | mean y: 2285560.633540373
[2025-07-25 20:54:39] 2025-07-26 00:54:06,669 | INFO     | -- intersect: 2463985242.856597
[2025-07-25 20:54:39] 2025-07-26 00:54:06,669 | INFO     | intersect: 2463985242.856597
[2025-07-25 20:54:39] 2025-07-26 00:54:06,669 | INFO     | chi2: 2.1769147158816122
[2025-07-25 20:54:39] 2025-07-26 00:54:06,670 | INFO     | sum of square deviations: 1177269655.6089737
[2025-07-25 20:54:39] 2025-07-26 00:54:06,671 | INFO     | sum of deviations: 8989764964.352554
[2025-07-25 20:54:39] 2025-07-26 00:54:06,671 | INFO     | mean x: 1753486187.6858974
[2025-07-25 20:54:39] 2025-07-26 00:54:06,671 | INFO     | mean y: 2299347.6602564105
[2025-07-25 20:54:39] 2025-07-26 00:54:06,671 | INFO     | -- intersect: -13387520580.536871
[2025-07-25 20:54:39] 2025-07-26 00:54:06,671 | INFO     | intersect: -13387520580.536871
[2025-07-25 20:54:39] 2025-07-26 00:54:06,671 | INFO     | chi2: 1.5001655031769328
[2025-07-25 20:54:39] 2025-07-26 00:54:06,672 | INFO     | current chi2=1.5001655031769328 (change=31.087539064689906 %)
[2025-07-25 20:54:39] 2025-07-26 00:54:06,672 | INFO     | sum of square deviations: 1067647895.5231799
[2025-07-25 20:54:39] 2025-07-26 00:54:06,673 | INFO     | sum of deviations: 9569254588.152317
[2025-07-25 20:54:39] 2025-07-26 00:54:06,673 | INFO     | mean x: 1753486035.1721854
[2025-07-25 20:54:39] 2025-07-26 00:54:06,673 | INFO     | mean y: 2300155.417218543
[2025-07-25 20:54:39] 2025-07-26 00:54:06,673 | INFO     | -- intersect: -15714074463.679426
[2025-07-25 20:54:39] 2025-07-26 00:54:06,673 | INFO     | intersect: -15714074463.679426
[2025-07-25 20:54:39] 2025-07-26 00:54:06,674 | INFO     | chi2: 1.5001780294322624
[2025-07-25 20:54:39] 2025-07-26 00:54:06,674 | INFO     | current chi2=1.5001780294322624 (change=-0.0008349915594733973 %)
[2025-07-25 20:54:39] 2025-07-26 00:54:06,674 | INFO     | right removable region: 150
[2025-07-25 20:54:39] 2025-07-26 00:54:06,674 | INFO     | sum of square deviations: 1177251965.6089737
[2025-07-25 20:54:39] 2025-07-26 00:54:06,675 | INFO     | sum of deviations: -25807642790.506416
[2025-07-25 20:54:39] 2025-07-26 00:54:06,675 | INFO     | mean x: 1753486492.6858974
[2025-07-25 20:54:39] 2025-07-26 00:54:06,675 | INFO     | mean y: 2316552.7243589745
[2025-07-25 20:54:39] 2025-07-26 00:54:06,675 | INFO     | -- intersect: 38442136033.34569
[2025-07-25 20:54:39] 2025-07-26 00:54:06,676 | INFO     | intersect: 38442136033.34569
[2025-07-25 20:54:39] 2025-07-26 00:54:06,676 | INFO     | chi2: 0.7513857089626085
[2025-07-25 20:54:39] 2025-07-26 00:54:06,676 | INFO     | current chi2=0.7513857089626085 (change=65.48391613686572 %)
[2025-07-25 20:54:39] 2025-07-26 00:54:06,676 | INFO     | sum of square deviations: 1067641065.4304649
[2025-07-25 20:54:39] 2025-07-26 00:54:06,677 | INFO     | sum of deviations: -26399756060.21855
[2025-07-25 20:54:39] 2025-07-26 00:54:06,677 | INFO     | mean x: 1753486645.192053
[2025-07-25 20:54:39] 2025-07-26 00:54:06,677 | INFO     | mean y: 2317361.317880795
[2025-07-25 20:54:39] 2025-07-26 00:54:06,678 | INFO     | -- intersect: 43361102618.66162
[2025-07-25 20:54:39] 2025-07-26 00:54:06,678 | INFO     | intersect: 43361102618.66162
[2025-07-25 20:54:39] 2025-07-26 00:54:06,678 | INFO     | chi2: 0.7390904119978972
[2025-07-25 20:54:39] 2025-07-26 00:54:06,678 | INFO     | current chi2=0.7390904119978972 (change=1.636349589571869 %)
[2025-07-25 20:54:39] 2025-07-26 00:54:06,678 | INFO     | left removable region: 20
[2025-07-25 20:54:39] 2025-07-26 00:54:06,679 | INFO     | sum of square deviations: 681267641.6923068
[2025-07-25 20:54:39] 2025-07-26 00:54:06,679 | INFO     | sum of deviations: -12952137700.0
[2025-07-25 20:54:39] 2025-07-26 00:54:06,679 | INFO     | mean x: 1753486614.6923077
[2025-07-25 20:54:39] 2025-07-26 00:54:06,680 | INFO     | mean y: 2332526.3
[2025-07-25 20:54:39] 2025-07-26 00:54:06,680 | INFO     | -- intersect: 33339304222.45341
[2025-07-25 20:54:39] 2025-07-26 00:54:06,680 | INFO     | intersect: 33339304222.45341
[2025-07-25 20:54:39] 2025-07-26 00:54:06,680 | INFO     | chi2: 0.0382906702664782
[2025-07-25 20:54:39] 2025-07-26 00:54:06,680 | INFO     | -- intersect: 33339304222.45341
[2025-07-25 20:54:39] 2025-07-26 00:54:06,680 | INFO     | current memory leak: -19.01 B/s (using 130 data points, chi2=0.04)
[2025-07-25 20:54:39] 2025-07-26 00:54:06,681 | INFO     | could have reported an average CPU frequency of 2631 MHz (9 samples)
[2025-07-25 20:54:39] 2025-07-26 00:54:06,681 | INFO     | ..............................
[2025-07-25 20:54:39] 2025-07-26 00:54:06,681 | INFO     | . Timing measurements:
[2025-07-25 20:54:39] 2025-07-26 00:54:06,681 | INFO     | . get job = 0 s
[2025-07-25 20:54:39] 2025-07-26 00:54:06,682 | INFO     | . initial setup = 1 s
[2025-07-25 20:54:39] 2025-07-26 00:54:06,682 | INFO     | . payload setup = 7 s
[2025-07-25 20:54:39] 2025-07-26 00:54:06,682 | INFO     | . stage-in = 0 s
[2025-07-25 20:54:39] 2025-07-26 00:54:06,682 | INFO     | . payload execution = 9777 s
[2025-07-25 20:54:39] 2025-07-26 00:54:06,682 | INFO     | . stage-out = 2 s
[2025-07-25 20:54:39] 2025-07-26 00:54:06,682 | INFO     | . log creation = 0 s
[2025-07-25 20:54:39] 2025-07-26 00:54:06,682 | INFO     | ..............................
[2025-07-25 20:54:39] 2025-07-26 00:54:06,790 | INFO     | 
[2025-07-25 20:54:39] 2025-07-26 00:54:06,791 | INFO     | job summary report
[2025-07-25 20:54:39] 2025-07-26 00:54:06,791 | INFO     | --------------------------------------------------
[2025-07-25 20:54:39] 2025-07-26 00:54:06,791 | INFO     | PanDA job id: 6744926244
[2025-07-25 20:54:39] 2025-07-26 00:54:06,791 | INFO     | task id: 45743349
[2025-07-25 20:54:39] 2025-07-26 00:54:06,791 | INFO     | errors: (none)
[2025-07-25 20:54:39] 2025-07-26 00:54:06,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 20:54:39] 2025-07-26 00:54:06,791 | INFO     | pilot state: finished 
[2025-07-25 20:54:39] 2025-07-26 00:54:06,791 | INFO     | transexitcode: 0
[2025-07-25 20:54:39] 2025-07-26 00:54:06,791 | INFO     | exeerrorcode: 0
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | exeerrordiag: 
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | exitcode: 0
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | exitmsg: OK
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | cpuconsumptiontime: 56048 s
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | nevents: 400
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | neventsw: 0
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | pid: 3836131
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | pgrp: 3836131
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | corecount: 10
[2025-07-25 20:54:39] 2025-07-26 00:54:06,792 | INFO     | event service: False
[2025-07-25 20:54:39] 2025-07-26 00:54:06,793 | INFO     | sizes: {0: 2397355, 1: 2397497, 5: 2397759, 11: 2397815, 9788: 2426406, 9789: 2426405, 9792: 2435587, 9794: 2435643, 9800: 2435901}
[2025-07-25 20:54:39] 2025-07-26 00:54:06,793 | INFO     | --------------------------------------------------
[2025-07-25 20:54:39] 2025-07-26 00:54:06,793 | INFO     | 
[2025-07-25 20:54:39] 2025-07-26 00:54:06,793 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 20:54:39] 2025-07-26 00:54:06,813 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,813 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,813 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,813 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,813 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,813 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,813 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,814 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,815 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 20:54:39] 2025-07-26 00:54:06,815 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,815 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 20:54:39] 2025-07-26 00:54:06,815 | INFO     | job 6744926244 has completed (purged errors)
[2025-07-25 20:54:39] 2025-07-26 00:54:06,815 | INFO     | overall cleanup function is called
[2025-07-25 20:54:39] 2025-07-26 00:54:07,823 | INFO     | --- collectZombieJob: --- 10, [3836131]
[2025-07-25 20:54:39] 2025-07-26 00:54:07,823 | INFO     | zombie collector waiting for pid 3836131
[2025-07-25 20:54:39] 2025-07-26 00:54:07,823 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 20:54:39] 2025-07-26 00:54:07,823 | INFO     | collected zombie processes
[2025-07-25 20:54:39] 2025-07-26 00:54:07,823 | INFO     | will attempt to kill all subprocesses of pid=3836131
[2025-07-25 20:54:39] 2025-07-26 00:54:08,145 | INFO     | process IDs to be killed: [3836131] (in reverse order)
[2025-07-25 20:54:39] 2025-07-26 00:54:08,211 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 20:54:39] 2025-07-26 00:54:08,212 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 20:54:39] 2025-07-26 00:54:08,223 | INFO     | did not find any defunct processes belonging to 3836131
[2025-07-25 20:54:39] 2025-07-26 00:54:08,236 | INFO     | did not find any defunct processes belonging to 3836131
[2025-07-25 20:54:39] 2025-07-26 00:54:08,236 | INFO     | ready for new job
[2025-07-25 20:54:39] 2025-07-26 00:54:08,236 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 20:54:39] 2025-07-26 00:54:08,238 | INFO     | ***************************************
[2025-07-25 20:54:39] 2025-07-26 00:54:08,238 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 20:54:39] 2025-07-26 00:54:08,238 | INFO     | ***************************************
[2025-07-25 20:54:39] 2025-07-26 00:54:08,238 | INFO     | 
[2025-07-25 20:54:39] 2025-07-26 00:54:08,251 | INFO     | architecture information:
[2025-07-25 20:54:39] 2025-07-26 00:54:08,252 | INFO     | executing command: cat /etc/os-release
[2025-07-25 20:54:39] 2025-07-26 00:54:08,264 | INFO     | cat /etc/os-release:
[2025-07-25 20:54:39] NAME="CentOS Linux"
[2025-07-25 20:54:39] VERSION="7 (Core)"
[2025-07-25 20:54:39] ID="centos"
[2025-07-25 20:54:39] ID_LIKE="rhel fedora"
[2025-07-25 20:54:39] VERSION_ID="7"
[2025-07-25 20:54:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 20:54:39] ANSI_COLOR="0;31"
[2025-07-25 20:54:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 20:54:39] HOME_URL="https://www.centos.org/"
[2025-07-25 20:54:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 20:54:39] 
[2025-07-25 20:54:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 20:54:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 20:54:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 20:54:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 20:54:39] 
[2025-07-25 20:54:39] 2025-07-26 00:54:08,264 | INFO     | ***************************************
[2025-07-25 20:54:39] 2025-07-26 00:54:08,767 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 20:54:39] 2025-07-26 00:54:08,779 | INFO     | sufficient remaining disk space (76689702912 B)
[2025-07-25 20:54:39] 2025-07-26 00:54:08,779 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 20:54:39] 2025-07-26 00:54:08,779 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 20:54:39] 2025-07-26 00:54:08,779 | INFO     | update_server=False
[2025-07-25 20:54:39] 2025-07-26 00:54:08,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 20:54:39] 2025-07-26 00:54:08,780 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 20:54:39] 2025-07-26 00:54:09,634 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 20:54:39] 2025-07-26 00:54:09,661 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 20:54:39] 2025-07-26 00:54:09,661 | INFO     | aborting loop
[2025-07-25 20:54:39] 2025-07-26 00:54:09,785 | INFO     | [job] queue monitor thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:09,785 | INFO     | [job] retrieve thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:09,819 | INFO     | all data control threads have been joined
[2025-07-25 20:54:39] 2025-07-26 00:54:09,846 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:09,976 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:10,137 | INFO     | [payload] validate_post thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:10,221 | INFO     | all payload control threads have been joined
[2025-07-25 20:54:39] 2025-07-26 00:54:10,235 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:10,436 | INFO     | all job control threads have been joined
[2025-07-25 20:54:39] 2025-07-26 00:54:10,502 | INFO     | [job] validate thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:10,649 | INFO     | [data] copytool_in thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:10,662 | INFO     | [job] job monitor thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:10,706 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:10,824 | INFO     | [data] control thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:11,226 | INFO     | [payload] control thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:11,291 | INFO     | [payload] failed_post thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:11,441 | INFO     | [job] control thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:11,640 | INFO     | [data] copytool_out thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:11,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 20:54:39] 2025-07-26 00:54:15,791 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 20:54:39] 2025-07-26 00:54:16,376 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140373998065472)>', '<ExcThread(monitor, started 140373288548096)>']
[2025-07-25 20:54:39] 2025-07-26 00:54:21,392 | INFO     | all workflow threads have been joined
[2025-07-25 20:54:39] 2025-07-26 00:54:21,392 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 20:54:39] 2025-07-26 00:54:21,393 | INFO     | traces error code: 0
[2025-07-25 20:54:39] 2025-07-26 00:54:21,393 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 20:54:39] 2025-07-26 00:54:39,542 | INFO     | PID=3829704 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 20:54:39] 2025-07-26 00:54:39,543 | INFO     | .. there are 25 such processes running
[2025-07-25 20:54:39] 2025-07-26 00:54:39,544 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 20:54:39] 2025-07-26 00:54:39,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 20:54:39] 2025-07-26 00:54:39,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 20:54:39] 2025-07-26 00:54:39,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 20:54:39] 2025-07-26 00:54:39,544 | INFO     | [monitor] control thread has ended
[2025-07-25 20:54:39] 2025-07-26 00:54:39,690 [wrapper] ==== pilot stdout END ====
[2025-07-25 20:54:39] 2025-07-26 00:54:39,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 20:54:39] 2025-07-26 00:54:39,697 [wrapper] pilotpid: 3829704
[2025-07-25 20:54:39] 2025-07-26 00:54:39,700 [wrapper] Pilot exit status: 0
[2025-07-25 20:54:39] 2025-07-26 00:54:39,713 [wrapper] pandaids: 6744926244 6744926244
[2025-07-25 20:54:39] 2025-07-26 00:54:39,785 [wrapper] cleanup supervisor_pilot   16671 3829705
[2025-07-25 20:54:39] 2025-07-26 00:54:39,788 [wrapper] Test setup, not cleaning
[2025-07-25 20:54:39] 2025-07-26 00:54:39,791 [wrapper] apfmon messages muted
[2025-07-25 20:54:39] 2025-07-26 00:54:39,794 [wrapper] ==== wrapper stdout END ====
[2025-07-25 20:54:39] 2025-07-26 00:54:39,796 [wrapper] ==== wrapper stderr END ====
[2025-07-25 20:54:39]  *** Error codes and diagnostics ***
[2025-07-25 20:54:39]     "exeErrorCode": 0,
[2025-07-25 20:54:39]     "exeErrorDiag": "",
[2025-07-25 20:54:39]     "pilotErrorCode": 0,
[2025-07-25 20:54:39]     "pilotErrorDiag": "",
[2025-07-25 20:54:39]  *** Listing of results directory ***
[2025-07-25 20:54:39] total 500364
[2025-07-25 20:54:39] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 15:13 pilot3.tar.gz
[2025-07-25 20:54:39] -rwx------. 1 boincer umatlas     36292 Jul 24 15:37 runpilot2-wrapper.sh
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 15:37 queuedata.json
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas       100 Jul 25 17:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 20:54:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 17:52 run_atlas
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas       105 Jul 25 17:52 job.xml
[2025-07-25 20:54:39] -rw-r--r--. 3 boincer umatlas 146612174 Jul 25 17:52 EVNT.45743347._000414.pool.root.1
[2025-07-25 20:54:39] -rw-r--r--. 3 boincer umatlas 146612174 Jul 25 17:52 ATLAS.root_0
[2025-07-25 20:54:39] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 17:52 shared
[2025-07-25 20:54:39] -rw-r--r--. 2 boincer umatlas    542879 Jul 25 17:52 input.tar.gz
[2025-07-25 20:54:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 17:52 start_atlas.sh
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas         0 Jul 25 17:52 boinc_lockfile
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas      2560 Jul 25 18:10 pandaJob.out
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas    980001 Jul 25 18:10 agis_schedconf.cvmfs.json
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas 212747857 Jul 25 20:53 HITS.45743349._007971.pool.root.1
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas       531 Jul 25 20:53 boinc_task_state.xml
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas      1039 Jul 25 20:53 memory_monitor_summary.json
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas   1593052 Jul 25 20:53 agis_ddmendpoints.agis.ALL.json
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas    382484 Jul 25 20:53 log.45743349._007971.job.log.tgz.1
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas      7814 Jul 25 20:54 heartbeat.json
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas      6660 Jul 25 20:54 init_data.xml
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas        28 Jul 25 20:54 wrapper_checkpoint.txt
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 20:54 boinc_mmap_file
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas       823 Jul 25 20:54 pilotlog.txt
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas        96 Jul 25 20:54 pilot_heartbeat.json
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas    881591 Jul 25 20:54 log.45743349._007971.job.log.1
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas       357 Jul 25 20:54 output.list
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas       620 Jul 25 20:54 runtime_log
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas   1280000 Jul 25 20:54 result.tar.gz
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas      8737 Jul 25 20:54 runtime_log.err
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas       777 Jul 25 20:54 Hk1LDmNwGz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmOdxKDm8RI3qm.diag
[2025-07-25 20:54:39] -rw-r--r--. 1 boincer umatlas     23173 Jul 25 20:54 stderr.txt
[2025-07-25 20:54:39] HITS file was successfully produced:
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas 212747857 Jul 25 20:53 shared/HITS.pool.root.1
[2025-07-25 20:54:39]  *** Contents of shared directory: ***
[2025-07-25 20:54:39] total 352744
[2025-07-25 20:54:39] -rw-r--r--. 3 boincer umatlas 146612174 Jul 25 17:52 ATLAS.root_0
[2025-07-25 20:54:39] -rw-r--r--. 2 boincer umatlas    542879 Jul 25 17:52 input.tar.gz
[2025-07-25 20:54:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 17:52 start_atlas.sh
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas 212747857 Jul 25 20:53 HITS.pool.root.1
[2025-07-25 20:54:39] -rw-------. 1 boincer umatlas   1280000 Jul 25 20:54 result.tar.gz
20:54:41 (3826105): run_atlas exited; CPU time 56298.472435
20:54:41 (3826105): called boinc_finish(0)

</stderr_txt>
]]>

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