Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:49:56 (2305913): wrapper (7.7.26015): starting
13:49:56 (2305913): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 13:49:56] Arguments: --nthreads 12
[2025-07-24 13:49:56] Threads: 12
[2025-07-24 13:49:56] Checking for CVMFS
[2025-07-24 13:49:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 13:49:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 13:49:56] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 13:49:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 13:49:56] 2.11.5.0 6741 33326 168024 148714 1 423 37384653 45568001 22790 130560 0 262567043 99.766 186306841 28184 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-24 13:49:56] CVMFS is ok
[2025-07-24 13:49:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 13:49:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 13:49:56] Further information can be found at the LHC@home message board.
[2025-07-24 13:49:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 13:49:56] Checking for apptainer binary...
[2025-07-24 13:49:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 13:49:56] Running /usr/bin/apptainer --version
[2025-07-24 13:49:56] apptainer version 1.4.1-1.el9
[2025-07-24 13:49:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 13:49:57] wns0090.triumf.lcg
[2025-07-24 13:49:57] apptainer works
[2025-07-24 13:49:57] Set ATHENA_PROC_NUMBER=12
[2025-07-24 13:49:57] Set ATHENA_CORE_NUMBER=12
[2025-07-24 13:49:57] Starting ATLAS job with PandaID=6744925764
[2025-07-24 13:49:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 13:54:01]  *** The last 200 lines of the pilot log: ***
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | WARNING  | found no stored workdir sizes
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | INFO     | will not add max space = 0 B to job metrics
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | WARNING  | wrong length of table data, x=[1753390249.0], y=[1475.0] (must be same and length>=4)
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | could have reported an average CPU frequency of 2673 MHz (4 samples)
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | ..............................
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . Timing measurements:
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . get job = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . initial setup = 2 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . payload setup = 9 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . stage-in = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . payload execution = 25 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . stage-out = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . log creation = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | ..............................
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 13:54:01] 2025-07-24 20:53:26,610 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744925764/pilotlog.txt
[2025-07-24 13:54:01] 2025-07-24 20:53:26,695 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-24 13:54:01] - Log from pilotlog.txt -
[2025-07-24 13:54:01] 2025-07-24 20:53:26,573 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 13:54:01] 2025-07-24 20:53:26,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | WARNING  | found no stored workdir sizes
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | INFO     | will not add max space = 0 B to job metrics
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | WARNING  | wrong length of table data, x=[1753390249.0], y=[1475.0] (must be same and length>=4)
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | could have reported an average CPU frequency of 2673 MHz (4 samples)
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | ..............................
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . Timing measurements:
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . get job = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . initial setup = 2 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . payload setup = 9 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . stage-in = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . payload execution = 25 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . stage-out = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . log creation = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | ..............................
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 13:54:01] 2025-07-24 20:53:26,610 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744925764/pilotlog.txt
[2025-07-24 13:54:01] 2025-07-24 20:53:26,695 | WARNING  | 
[2025-07-24 13:54:01] [begin log extracts]
[2025-07-24 13:54:01] - Log from pilotlog.txt -
[2025-07-24 13:54:01] 2025-07-24 20:53:26,573 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 13:54:01] 2025-07-24 20:53:26,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | WARNING  | found no stored workdir sizes
[2025-07-24 13:54:01] 2025-07-24 20:53:26,574 | INFO     | will not add max space = 0 B to job metrics
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | WARNING  | wrong length of table data, x=[1753390249.0], y=[1475.0] (must be same and length>=4)
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | could have reported an average CPU frequency of 2673 MHz (4 samples)
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | ..............................
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . Timing measurements:
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . get job = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . initial setup = 2 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . payload setup = 9 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . stage-in = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . payload execution = 25 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . stage-out = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | . log creation = 0 s
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | ..............................
[2025-07-24 13:54:01] 2025-07-24 20:53:26,575 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 13:54:01] 2025-07-24 20:53:26,610 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744925764/pilotlog.txt
[2025-07-24 13:54:01] [end log extracts]
[2025-07-24 13:54:01] 2025-07-24 20:53:26,696 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-24 13:54:01] 2025-07-24 20:53:26,697 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-24 13:54:01] 2025-07-24 20:53:26,727 | INFO     | monitor loop #65: job 0:6744925764 is in state 'failed'
[2025-07-24 13:54:01] 2025-07-24 20:53:26,727 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | 
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | job summary report
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | --------------------------------------------------
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | PanDA job id: 6744925764
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | task id: 45743349
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-24 13:51:03,196 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | pilot state: failed 
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | transexitcode: 65
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | exeerrorcode: 65
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | exitcode: 65
[2025-07-24 13:54:01] 2025-07-24 20:53:27,116 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | cpuconsumptiontime: 17 s
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | nevents: 0
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | neventsw: 0
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | pid: 2316052
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | pgrp: 2316052
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | corecount: 12
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | event service: False
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | sizes: {0: 2396642, 1: 2397495, 9: 2397757, 12: 2397785, 39: 2420953, 40: 2420929, 41: 2425377, 42: 2425405, 175: 2425599}
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | --------------------------------------------------
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | 
[2025-07-24 13:54:01] 2025-07-24 20:53:27,117 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-24 13:54:01] 2025-07-24 20:53:27,193 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,193 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,193 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,193 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 13:54:01] 2025-07-24 20:53:27,194 | INFO     | job 6744925764 has completed (purged errors)
[2025-07-24 13:54:01] 2025-07-24 20:53:27,195 | INFO     | overall cleanup function is called
[2025-07-24 13:54:01] 2025-07-24 20:53:28,202 | INFO     | --- collectZombieJob: --- 10, [2316052]
[2025-07-24 13:54:01] 2025-07-24 20:53:28,202 | INFO     | zombie collector waiting for pid 2316052
[2025-07-24 13:54:01] 2025-07-24 20:53:28,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 13:54:01] 2025-07-24 20:53:28,202 | INFO     | collected zombie processes
[2025-07-24 13:54:01] 2025-07-24 20:53:28,202 | INFO     | will attempt to kill all subprocesses of pid=2316052
[2025-07-24 13:54:01] 2025-07-24 20:53:29,379 | INFO     | process IDs to be killed: [2316052] (in reverse order)
[2025-07-24 13:54:01] 2025-07-24 20:53:29,676 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 13:54:01] 2025-07-24 20:53:29,676 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 13:54:01] 2025-07-24 20:53:29,728 | INFO     | did not find any defunct processes belonging to 2316052
[2025-07-24 13:54:01] 2025-07-24 20:53:29,800 | INFO     | did not find any defunct processes belonging to 2316052
[2025-07-24 13:54:01] 2025-07-24 20:53:29,800 | INFO     | ready for new job
[2025-07-24 13:54:01] 2025-07-24 20:53:29,800 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 13:54:01] 2025-07-24 20:53:29,802 | INFO     | ***************************************
[2025-07-24 13:54:01] 2025-07-24 20:53:29,802 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 13:54:01] 2025-07-24 20:53:29,802 | INFO     | ***************************************
[2025-07-24 13:54:01] 2025-07-24 20:53:29,802 | INFO     | 
[2025-07-24 13:54:01] 2025-07-24 20:53:29,838 | INFO     | architecture information:
[2025-07-24 13:54:01] 2025-07-24 20:53:29,843 | INFO     | executing command: cat /etc/os-release
[2025-07-24 13:54:01] 2025-07-24 20:53:29,890 | INFO     | cat /etc/os-release:
[2025-07-24 13:54:01] NAME="CentOS Linux"
[2025-07-24 13:54:01] VERSION="7 (Core)"
[2025-07-24 13:54:01] ID="centos"
[2025-07-24 13:54:01] ID_LIKE="rhel fedora"
[2025-07-24 13:54:01] VERSION_ID="7"
[2025-07-24 13:54:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 13:54:01] ANSI_COLOR="0;31"
[2025-07-24 13:54:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 13:54:01] HOME_URL="https://www.centos.org/"
[2025-07-24 13:54:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 13:54:01] 
[2025-07-24 13:54:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 13:54:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 13:54:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 13:54:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 13:54:01] 
[2025-07-24 13:54:01] 2025-07-24 20:53:29,890 | INFO     | ***************************************
[2025-07-24 13:54:01] 2025-07-24 20:53:30,394 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-24 13:54:01] 2025-07-24 20:53:30,479 | INFO     | sufficient remaining disk space (1920671416320 B)
[2025-07-24 13:54:01] 2025-07-24 20:53:30,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 13:54:01] 2025-07-24 20:53:30,479 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 13:54:01] 2025-07-24 20:53:30,480 | INFO     | update_server=False
[2025-07-24 13:54:01] 2025-07-24 20:53:30,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 13:54:01] 2025-07-24 20:53:30,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 13:54:01] 2025-07-24 20:53:30,481 | INFO     | aborting loop
[2025-07-24 13:54:01] 2025-07-24 20:53:30,850 | INFO     | all payload control threads have been joined
[2025-07-24 13:54:01] 2025-07-24 20:53:31,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 13:54:01] 2025-07-24 20:53:31,339 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 13:54:01] 2025-07-24 20:53:31,341 | INFO     | all data control threads have been joined
[2025-07-24 13:54:01] 2025-07-24 20:53:31,344 | INFO     | all job control threads have been joined
[2025-07-24 13:54:01] 2025-07-24 20:53:31,486 | INFO     | [job] retrieve thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:31,487 | INFO     | [job] job monitor thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:31,818 | INFO     | [payload] validate_post thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:31,856 | INFO     | [payload] control thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:32,046 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:32,046 | INFO     | [job] validate thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:32,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 13:54:01] 2025-07-24 20:53:32,347 | INFO     | [data] control thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:32,348 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:32,350 | INFO     | [job] control thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:32,359 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:32,360 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:32,790 | INFO     | [data] copytool_in thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:32,791 | INFO     | [payload] failed_post thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:33,029 | INFO     | [data] copytool_out thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:33,140 | INFO     | [job] queue monitor thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:35,351 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 13:54:01] 2025-07-24 20:53:37,387 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140067879020352)>', '<ExcThread(monitor, started 140067205019392)>']
[2025-07-24 13:54:01] 2025-07-24 20:53:42,420 | INFO     | all workflow threads have been joined
[2025-07-24 13:54:01] 2025-07-24 20:53:42,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 13:54:01] 2025-07-24 20:53:42,420 | INFO     | traces error code: 0
[2025-07-24 13:54:01] 2025-07-24 20:53:42,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 13:54:01] 2025-07-24 20:54:00,652 | INFO     | PID=2309721 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 13:54:01] 2025-07-24 20:54:00,658 | INFO     | .. there are 42 such processes running
[2025-07-24 13:54:01] 2025-07-24 20:54:00,659 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 13:54:01] 2025-07-24 20:54:00,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 13:54:01] 2025-07-24 20:54:00,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 13:54:01] 2025-07-24 20:54:00,659 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 13:54:01] 2025-07-24 20:54:00,659 | INFO     | [monitor] control thread has ended
[2025-07-24 13:54:01] 2025-07-24 20:54:00,844 [wrapper] ==== pilot stdout END ====
[2025-07-24 13:54:01] 2025-07-24 20:54:00,847 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 13:54:01] 2025-07-24 20:54:00,848 [wrapper] pilotpid: 2309721
[2025-07-24 13:54:01] 2025-07-24 20:54:00,850 [wrapper] Pilot exit status: 0
[2025-07-24 13:54:01] 2025-07-24 20:54:00,890 [wrapper] pandaids: 6744925764
[2025-07-24 13:54:01] 2025-07-24 20:54:01,021 [wrapper] cleanup supervisor_pilot 2309727 2309722
[2025-07-24 13:54:01] 2025-07-24 20:54:01,049 [wrapper] Test setup, not cleaning
[2025-07-24 13:54:01] 2025-07-24 20:54:01,073 [wrapper] apfmon messages muted
[2025-07-24 13:54:01] 2025-07-24 20:54:01,106 [wrapper] ==== wrapper stdout END ====
[2025-07-24 13:54:01] 2025-07-24 20:54:01,108 [wrapper] ==== wrapper stderr END ====
[2025-07-24 13:54:01]  *** Error codes and diagnostics ***
[2025-07-24 13:54:01]     "exeErrorCode": 65,
[2025-07-24 13:54:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 13:54:01]     "pilotErrorCode": 1305,
[2025-07-24 13:54:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 13:54:01]  *** Listing of results directory ***
[2025-07-24 13:54:01] total 231120
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc    530466 Jul 24 12:13 pilot3.tar.gz
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc      5112 Jul 24 12:24 queuedata.json
[2025-07-24 13:54:01] -rwx------. 1 boinc boinc     36292 Jul 24 12:25 runpilot2-wrapper.sh
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc       100 Jul 24 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 13:54:01] -rwxr-xr-x. 1 boinc boinc      7986 Jul 24 13:49 run_atlas
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc       105 Jul 24 13:49 job.xml
[2025-07-24 13:54:01] -rw-r--r--. 2 boinc boinc 232596085 Jul 24 13:49 EVNT.45743347._000398.pool.root.1
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc      6596 Jul 24 13:49 init_data.xml
[2025-07-24 13:54:01] -rw-r--r--. 2 boinc boinc    542887 Jul 24 13:49 input.tar.gz
[2025-07-24 13:54:01] -rw-r--r--. 2 boinc boinc     15095 Jul 24 13:49 start_atlas.sh
[2025-07-24 13:54:01] drwxrwx--x. 2 boinc boinc      4096 Jul 24 13:49 shared
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc         0 Jul 24 13:49 boinc_lockfile
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc      2561 Jul 24 13:49 pandaJob.out
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc    979701 Jul 24 13:50 agis_schedconf.cvmfs.json
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc   1593052 Jul 24 13:50 agis_ddmendpoints.agis.ALL.json
[2025-07-24 13:54:01] drwx------. 4 boinc boinc      4096 Jul 24 13:50 pilot3
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc       522 Jul 24 13:51 boinc_task_state.xml
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc       954 Jul 24 13:51 memory_monitor_summary.json
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc     20799 Jul 24 13:51 log.45743349._007582.job.log.tgz.1
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc        95 Jul 24 13:53 pilot_heartbeat.json
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc      8355 Jul 24 13:53 heartbeat.json
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc      8192 Jul 24 13:53 boinc_mmap_file
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc        22 Jul 24 13:53 wrapper_checkpoint.txt
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc       823 Jul 24 13:54 pilotlog.txt
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc     77119 Jul 24 13:54 log.45743349._007582.job.log.1
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc       188 Jul 24 13:54 output.list
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc       620 Jul 24 13:54 runtime_log
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc    112640 Jul 24 13:54 result.tar.gz
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc       644 Jul 24 13:54 WNeLDmTkGz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKLNLDmubhwBo.diag
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc      8485 Jul 24 13:54 runtime_log.err
[2025-07-24 13:54:01] -rw-r--r--. 1 boinc boinc     21716 Jul 24 13:54 stderr.txt
[2025-07-24 13:54:01] No HITS result produced
[2025-07-24 13:54:01]  *** Contents of shared directory: ***
[2025-07-24 13:54:01] total 227812
[2025-07-24 13:54:01] -rw-r--r--. 2 boinc boinc 232596085 Jul 24 13:49 ATLAS.root_0
[2025-07-24 13:54:01] -rw-r--r--. 2 boinc boinc    542887 Jul 24 13:49 input.tar.gz
[2025-07-24 13:54:01] -rw-r--r--. 2 boinc boinc     15095 Jul 24 13:49 start_atlas.sh
[2025-07-24 13:54:01] -rw-------. 1 boinc boinc    112640 Jul 24 13:54 result.tar.gz
13:54:02 (2305913): run_atlas exited; CPU time 23.278832
13:54:02 (2305913): called boinc_finish(0)

</stderr_txt>
]]>

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