Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:08:41 (3075473): wrapper (7.7.26015): starting
13:08:41 (3075473): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 13:08:41] Arguments: --nthreads 12
[2025-07-24 13:08:41] Threads: 12
[2025-07-24 13:08:41] Checking for CVMFS
[2025-07-24 13:08:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 13:08:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 13:08:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 13:08:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 13:08:44] 2.11.5.0 21391 33190 345536 148713 2 407 36714237 45568000 23442 130560 0 234712065 99.741 177555963 26669 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-24 13:08:44] CVMFS is ok
[2025-07-24 13:08:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 13:08:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 13:08:44] Further information can be found at the LHC@home message board.
[2025-07-24 13:08:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 13:08:44] Checking for apptainer binary...
[2025-07-24 13:08:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 13:08:44] Running /usr/bin/apptainer --version
[2025-07-24 13:08:46] apptainer version 1.4.1-1.el9
[2025-07-24 13:08:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 13:08:49] wns0075.triumf.lcg
[2025-07-24 13:08:49] apptainer works
[2025-07-24 13:08:49] Set ATHENA_PROC_NUMBER=12
[2025-07-24 13:08:49] Set ATHENA_CORE_NUMBER=12
[2025-07-24 13:08:49] Starting ATLAS job with PandaID=6744922841
[2025-07-24 13:08:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 13:16:21]  *** The last 200 lines of the pilot log: ***
[2025-07-24 13:16:21] 2025-07-24 20:15:47,237 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 13:16:21] 2025-07-24 20:15:47,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 13:16:21] 2025-07-24 20:15:47,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 13:16:21] 2025-07-24 20:15:47,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | WARNING  | wrong length of table data, x=[1753387930.0, 1753387991.0], y=[1946.0, 466992.0] (must be same and length>=4)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | could have reported an average CPU frequency of 2441 MHz (4 samples)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | ..............................
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . Timing measurements:
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . get job = 0 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . initial setup = 6 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . payload setup = 38 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . stage-in = 0 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . payload execution = 100 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . stage-out = 2 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . log creation = 0 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,243 | INFO     | ..............................
[2025-07-24 13:16:21] 2025-07-24 20:15:47,243 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 13:16:21] 2025-07-24 20:15:47,243 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744922841/pilotlog.txt
[2025-07-24 13:16:21] 2025-07-24 20:15:47,364 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-24 13:16:21] - Log from pilotlog.txt -
[2025-07-24 13:16:21] 2025-07-24 20:15:47,226 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744922841/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,237 | INFO     | extracted standard info from prmon json
[2025-07-24 13:16:21] 2025-07-24 20:15:47,237 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 13:16:21] 2025-07-24 20:15:47,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 13:16:21] 2025-07-24 20:15:47,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 13:16:21] 2025-07-24 20:15:47,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | WARNING  | wrong length of table data, x=[1753387930.0, 1753387991.0], y=[1946.0, 466992.0] (must be same and length>=4)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | could have reported an average CPU frequency of 2441 MHz (4 samples)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | ..............................
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . Timing measurements:
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . get job = 0 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . initial setup = 6 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . payload setup = 38 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . stage-in = 0 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . payload execution = 100 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . stage-out = 2 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . log creation = 0 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,243 | INFO     | ..............................
[2025-07-24 13:16:21] 2025-07-24 20:15:47,243 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 13:16:21] 2025-07-24 20:15:47,243 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744922841/pilotlog.txt
[2025-07-24 13:16:21] 2025-07-24 20:15:47,364 | WARNING  | 
[2025-07-24 13:16:21] [begin log extracts]
[2025-07-24 13:16:21] - Log from pilotlog.txt -
[2025-07-24 13:16:21] 2025-07-24 20:15:47,226 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744922841/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,237 | INFO     | extracted standard info from prmon json
[2025-07-24 13:16:21] 2025-07-24 20:15:47,237 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 13:16:21] 2025-07-24 20:15:47,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 13:16:21] 2025-07-24 20:15:47,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 13:16:21] 2025-07-24 20:15:47,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | WARNING  | wrong length of table data, x=[1753387930.0, 1753387991.0], y=[1946.0, 466992.0] (must be same and length>=4)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | could have reported an average CPU frequency of 2441 MHz (4 samples)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | ..............................
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . Timing measurements:
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . get job = 0 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . initial setup = 6 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . payload setup = 38 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . stage-in = 0 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . payload execution = 100 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . stage-out = 2 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,242 | INFO     | . log creation = 0 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,243 | INFO     | ..............................
[2025-07-24 13:16:21] 2025-07-24 20:15:47,243 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 13:16:21] 2025-07-24 20:15:47,243 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744922841/pilotlog.txt
[2025-07-24 13:16:21] [end log extracts]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,365 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,365 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-24 13:16:21] 2025-07-24 20:15:47,453 | INFO     | 
[2025-07-24 13:16:21] 2025-07-24 20:15:47,453 | INFO     | job summary report
[2025-07-24 13:16:21] 2025-07-24 20:15:47,453 | INFO     | --------------------------------------------------
[2025-07-24 13:16:21] 2025-07-24 20:15:47,453 | INFO     | PanDA job id: 6744922841
[2025-07-24 13:16:21] 2025-07-24 20:15:47,453 | INFO     | task id: 45743349
[2025-07-24 13:16:21] 2025-07-24 20:15:47,453 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-24 13:13:11,285 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-24 13:16:21] 2025-07-24 20:15:47,453 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 13:16:21] 2025-07-24 20:15:47,453 | INFO     | pilot state: failed 
[2025-07-24 13:16:21] 2025-07-24 20:15:47,453 | INFO     | transexitcode: 65
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | exeerrorcode: 65
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | exitcode: 65
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | cpuconsumptiontime: 21 s
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | nevents: 0
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | neventsw: 0
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | pid: 3085725
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | pgrp: 3085725
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | corecount: 12
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | event service: False
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | sizes: {0: 2396641, 1: 2397494, 12: 2397494, 23: 2397522, 31: 2397812, 34: 2397840, 143: 2421312, 147: 2425632, 149: 2425660, 287: 2425826}
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | --------------------------------------------------
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | 
[2025-07-24 13:16:21] 2025-07-24 20:15:47,454 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,632 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | job 6744922841 has completed (purged errors)
[2025-07-24 13:16:21] 2025-07-24 20:15:47,633 | INFO     | overall cleanup function is called
[2025-07-24 13:16:21] 2025-07-24 20:15:48,643 | INFO     | --- collectZombieJob: --- 10, [3085725]
[2025-07-24 13:16:21] 2025-07-24 20:15:48,643 | INFO     | zombie collector waiting for pid 3085725
[2025-07-24 13:16:21] 2025-07-24 20:15:48,643 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 13:16:21] 2025-07-24 20:15:48,643 | INFO     | collected zombie processes
[2025-07-24 13:16:21] 2025-07-24 20:15:48,643 | INFO     | will attempt to kill all subprocesses of pid=3085725
[2025-07-24 13:16:21] 2025-07-24 20:15:49,427 | INFO     | process IDs to be killed: [3085725] (in reverse order)
[2025-07-24 13:16:21] 2025-07-24 20:15:49,685 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 13:16:21] 2025-07-24 20:15:49,686 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 13:16:21] 2025-07-24 20:15:49,730 | INFO     | did not find any defunct processes belonging to 3085725
[2025-07-24 13:16:21] 2025-07-24 20:15:49,773 | INFO     | did not find any defunct processes belonging to 3085725
[2025-07-24 13:16:21] 2025-07-24 20:15:49,773 | INFO     | ready for new job
[2025-07-24 13:16:21] 2025-07-24 20:15:49,773 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 13:16:21] 2025-07-24 20:15:49,775 | INFO     | ***************************************
[2025-07-24 13:16:21] 2025-07-24 20:15:49,775 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 13:16:21] 2025-07-24 20:15:49,775 | INFO     | ***************************************
[2025-07-24 13:16:21] 2025-07-24 20:15:49,775 | INFO     | 
[2025-07-24 13:16:21] 2025-07-24 20:15:49,796 | INFO     | architecture information:
[2025-07-24 13:16:21] 2025-07-24 20:15:49,800 | INFO     | executing command: cat /etc/os-release
[2025-07-24 13:16:21] 2025-07-24 20:15:49,904 | INFO     | cat /etc/os-release:
[2025-07-24 13:16:21] NAME="CentOS Linux"
[2025-07-24 13:16:21] VERSION="7 (Core)"
[2025-07-24 13:16:21] ID="centos"
[2025-07-24 13:16:21] ID_LIKE="rhel fedora"
[2025-07-24 13:16:21] VERSION_ID="7"
[2025-07-24 13:16:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 13:16:21] ANSI_COLOR="0;31"
[2025-07-24 13:16:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 13:16:21] HOME_URL="https://www.centos.org/"
[2025-07-24 13:16:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 13:16:21] 
[2025-07-24 13:16:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 13:16:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 13:16:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 13:16:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 13:16:21] 
[2025-07-24 13:16:21] 2025-07-24 20:15:49,904 | INFO     | ***************************************
[2025-07-24 13:16:21] 2025-07-24 20:15:50,408 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-24 13:16:21] 2025-07-24 20:15:50,460 | INFO     | sufficient remaining disk space (1971191808000 B)
[2025-07-24 13:16:21] 2025-07-24 20:15:50,460 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 13:16:21] 2025-07-24 20:15:50,460 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 13:16:21] 2025-07-24 20:15:50,460 | INFO     | update_server=False
[2025-07-24 13:16:21] 2025-07-24 20:15:50,460 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 13:16:21] 2025-07-24 20:15:50,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 13:16:21] 2025-07-24 20:15:50,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 13:16:21] 2025-07-24 20:15:50,954 | INFO     | all data control threads have been joined
[2025-07-24 13:16:21] 2025-07-24 20:15:51,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 13:16:21] 2025-07-24 20:15:51,203 | INFO     | aborting loop
[2025-07-24 13:16:21] 2025-07-24 20:15:51,405 | INFO     | all payload control threads have been joined
[2025-07-24 13:16:21] 2025-07-24 20:15:51,466 | INFO     | [job] retrieve thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:51,600 | INFO     | [data] copytool_in thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:51,802 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:51,932 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:51,961 | INFO     | [data] control thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:51,982 | INFO     | all job control threads have been joined
[2025-07-24 13:16:21] 2025-07-24 20:15:52,024 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:52,061 | INFO     | [job] validate thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:52,063 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:52,209 | INFO     | [job] job monitor thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:52,371 | INFO     | [payload] failed_post thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:52,410 | INFO     | [payload] control thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:52,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 13:16:21] 2025-07-24 20:15:52,594 | INFO     | [payload] validate_post thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:52,618 | INFO     | [data] copytool_out thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:52,988 | INFO     | [job] control thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:53,478 | INFO     | [job] queue monitor thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:54,528 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 13:16:21] 2025-07-24 20:15:55,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140545102456640)>', '<ExcThread(monitor, started 140544709732096)>']
[2025-07-24 13:16:21] 2025-07-24 20:16:00,418 | INFO     | all workflow threads have been joined
[2025-07-24 13:16:21] 2025-07-24 20:16:00,418 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 13:16:21] 2025-07-24 20:16:00,418 | INFO     | traces error code: 0
[2025-07-24 13:16:21] 2025-07-24 20:16:00,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 13:16:21] 2025-07-24 20:16:20,042 | INFO     | PID=3079097 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 13:16:21] 2025-07-24 20:16:20,043 | INFO     | .. there are 42 such processes running
[2025-07-24 13:16:21] 2025-07-24 20:16:20,044 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 13:16:21] 2025-07-24 20:16:20,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 13:16:21] 2025-07-24 20:16:20,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 13:16:21] 2025-07-24 20:16:20,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 13:16:21] 2025-07-24 20:16:20,044 | INFO     | [monitor] control thread has ended
[2025-07-24 13:16:21] 2025-07-24 20:16:20,220 [wrapper] ==== pilot stdout END ====
[2025-07-24 13:16:21] 2025-07-24 20:16:20,246 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 13:16:21] 2025-07-24 20:16:20,270 [wrapper] pilotpid: 3079097
[2025-07-24 13:16:21] 2025-07-24 20:16:20,293 [wrapper] Pilot exit status: 0
[2025-07-24 13:16:21] 2025-07-24 20:16:20,417 [wrapper] pandaids: 6744922841
[2025-07-24 13:16:21] 2025-07-24 20:16:20,536 [wrapper] cleanup supervisor_pilot 3079103 3079098
[2025-07-24 13:16:21] 2025-07-24 20:16:20,539 [wrapper] Test setup, not cleaning
[2025-07-24 13:16:21] 2025-07-24 20:16:20,547 [wrapper] apfmon messages muted
[2025-07-24 13:16:21] 2025-07-24 20:16:20,562 [wrapper] ==== wrapper stdout END ====
[2025-07-24 13:16:21] 2025-07-24 20:16:20,579 [wrapper] ==== wrapper stderr END ====
[2025-07-24 13:16:21]  *** Error codes and diagnostics ***
[2025-07-24 13:16:21]     "exeErrorCode": 65,
[2025-07-24 13:16:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 13:16:21]     "pilotErrorCode": 1305,
[2025-07-24 13:16:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 13:16:21]  *** Listing of results directory ***
[2025-07-24 13:16:21] total 145908
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc    530466 Jul 24 11:26 pilot3.tar.gz
[2025-07-24 13:16:21] -rwx------. 1 boinc boinc     36292 Jul 24 12:01 runpilot2-wrapper.sh
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc      5112 Jul 24 12:01 queuedata.json
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc       100 Jul 24 13:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 13:16:21] -rwxr-xr-x. 1 boinc boinc      7986 Jul 24 13:08 run_atlas
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc       105 Jul 24 13:08 job.xml
[2025-07-24 13:16:21] -rw-r--r--. 2 boinc boinc 145329524 Jul 24 13:08 EVNT.45743347._000360.pool.root.1
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc      6595 Jul 24 13:08 init_data.xml
[2025-07-24 13:16:21] -rw-r--r--. 2 boinc boinc     15095 Jul 24 13:08 start_atlas.sh
[2025-07-24 13:16:21] drwxrwx--x. 2 boinc boinc      4096 Jul 24 13:08 shared
[2025-07-24 13:16:21] -rw-r--r--. 2 boinc boinc    542875 Jul 24 13:08 input.tar.gz
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc         0 Jul 24 13:08 boinc_lockfile
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc      2560 Jul 24 13:08 pandaJob.out
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc    979685 Jul 24 13:09 agis_schedconf.cvmfs.json
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc   1593052 Jul 24 13:09 agis_ddmendpoints.agis.ALL.json
[2025-07-24 13:16:21] drwx------. 4 boinc boinc      4096 Jul 24 13:10 pilot3
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc       525 Jul 24 13:13 boinc_task_state.xml
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc      1012 Jul 24 13:13 memory_monitor_summary.json
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc     22031 Jul 24 13:13 log.45743349._006886.job.log.tgz.1
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc      8442 Jul 24 13:15 heartbeat.json
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc      8192 Jul 24 13:16 boinc_mmap_file
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc        23 Jul 24 13:16 wrapper_checkpoint.txt
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc       823 Jul 24 13:16 pilotlog.txt
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc        95 Jul 24 13:16 pilot_heartbeat.json
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc     85720 Jul 24 13:16 log.45743349._006886.job.log.1
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc       188 Jul 24 13:16 output.list
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc       620 Jul 24 13:16 runtime_log
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc    122880 Jul 24 13:16 result.tar.gz
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc       647 Jul 24 13:16 xQLLDmbNGz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBENLDmos4Xon.diag
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc      8485 Jul 24 13:16 runtime_log.err
[2025-07-24 13:16:21] -rw-r--r--. 1 boinc boinc     21909 Jul 24 13:16 stderr.txt
[2025-07-24 13:16:21] No HITS result produced
[2025-07-24 13:16:21]  *** Contents of shared directory: ***
[2025-07-24 13:16:21] total 142592
[2025-07-24 13:16:21] -rw-r--r--. 2 boinc boinc 145329524 Jul 24 13:08 ATLAS.root_0
[2025-07-24 13:16:21] -rw-r--r--. 2 boinc boinc     15095 Jul 24 13:08 start_atlas.sh
[2025-07-24 13:16:21] -rw-r--r--. 2 boinc boinc    542875 Jul 24 13:08 input.tar.gz
[2025-07-24 13:16:21] -rw-------. 1 boinc boinc    122880 Jul 24 13:16 result.tar.gz
13:16:22 (3075473): run_atlas exited; CPU time 35.806643
13:16:22 (3075473): called boinc_finish(0)

</stderr_txt>
]]>

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