Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-24 16:05:21 (18676): Detected: vboxwrapper 26206
2025-07-24 16:05:21 (18676): Detected: BOINC client v8.0.2
2025-07-24 16:05:22 (18676): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2025-07-24 16:05:22 (18676): Successfully copied 'init_data.xml' to the shared directory.
2025-07-24 16:05:23 (18676): Create VM. (boinc_4f25dc89af16cb6b, slot#2)
2025-07-24 16:05:23 (18676): Setting Memory Size for VM. (4200MB)
2025-07-24 16:05:24 (18676): Setting CPU Count for VM. (2)
2025-07-24 16:05:24 (18676): Setting Chipset Options for VM.
2025-07-24 16:05:24 (18676): Setting Graphics Controller Options for VM.
2025-07-24 16:05:24 (18676): Setting Boot Options for VM.
2025-07-24 16:05:25 (18676): Setting Network Configuration for NAT.
2025-07-24 16:05:25 (18676): Enabling VM Network Access.
2025-07-24 16:05:25 (18676): Disabling USB Support for VM.
2025-07-24 16:05:26 (18676): Disabling COM Port Support for VM.
2025-07-24 16:05:26 (18676): Disabling LPT Port Support for VM.
2025-07-24 16:05:26 (18676): Disabling Audio Support for VM.
2025-07-24 16:05:26 (18676): Disabling Clipboard Support for VM.
2025-07-24 16:05:27 (18676): Disabling Drag and Drop Support for VM.
2025-07-24 16:05:27 (18676): Adding storage controller(s) to VM.
2025-07-24 16:05:27 (18676): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-24 16:05:30 (18676): Adding VirtualBox Guest Additions to VM.
2025-07-24 16:05:31 (18676): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-24 16:05:31 (18676): forwarding host port 48525 to guest port 80
2025-07-24 16:05:31 (18676): Enabling remote desktop for VM.
2025-07-24 16:05:32 (18676): Enabling shared directory for VM.
2025-07-24 16:05:32 (18676): Starting VM using VBoxManage interface. (boinc_4f25dc89af16cb6b, slot#2)
2025-07-24 16:05:40 (18676): Successfully started VM. (PID = '11896')
2025-07-24 16:05:40 (18676): Reporting VM Process ID to BOINC.
2025-07-24 16:05:40 (18676): Guest Log: BIOS: VirtualBox 7.0.8
2025-07-24 16:05:40 (18676): Guest Log: CPUID EDX: 0x178bfbff
2025-07-24 16:05:40 (18676): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-24 16:05:40 (18676): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-24 16:05:40 (18676): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-24 16:05:40 (18676): Detected: Web Application Enabled (http://localhost:48525)
2025-07-24 16:05:40 (18676): Detected: Remote Desktop Enabled (localhost:48526)
2025-07-24 16:05:40 (18676): Preference change detected
2025-07-24 16:05:40 (18676): Setting CPU throttle for VM. (50%)
2025-07-24 16:05:40 (18676): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-24 16:05:42 (18676): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-24 16:05:42 (18676): Guest Log: BIOS: Booting from Hard Disk...
2025-07-24 16:05:46 (18676): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-24 16:05:46 (18676): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-24 16:05:46 (18676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-24 16:05:54 (18676): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-24 16:05:54 (18676): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-24 16:06:11 (18676): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-24 16:06:11 (18676): Guest Log: 00:00:00.000167 main     Log opened 2025-07-24T16:06:09.779364000Z
2025-07-24 16:06:11 (18676): Guest Log: 00:00:00.000331 main     OS Product: Linux
2025-07-24 16:06:11 (18676): Guest Log: 00:00:00.000391 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-24 16:06:11 (18676): Guest Log: 00:00:00.000448 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-24 16:06:11 (18676): Guest Log: 00:00:00.000504 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-24 16:06:11 (18676): Guest Log: 00:00:00.000506 main     Process ID: 1278
2025-07-24 16:06:11 (18676): Guest Log: 00:00:00.000507 main     Package type: LINUX_64BITS_GENERIC
2025-07-24 16:06:11 (18676): Guest Log: 00:00:00.002346 main     5.2.32 r132073 started. Verbose level = 0
2025-07-24 16:06:11 (18676): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-24 16:06:11 (18676): Guest Log: [INFO] Mounting shared directory
2025-07-24 16:06:11 (18676): Guest Log: [INFO] Checking for init_data.xml
2025-07-24 16:06:21 (18676): Guest Log: 00:00:10.014058 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 904 432 000ns (GuestNow=1 753 387 580 687 822 000 ns GuestLast=1 753 373 169 783 390 000 ns fSetTimeLastLoop=true )
2025-07-24 16:06:45 (18676): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-24 16:06:45 (18676): Guest Log: [INFO] Detected branch: prod
2025-07-24 16:06:47 (18676): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-24 16:06:47 (18676): Guest Log: Copying input files
2025-07-24 16:06:49 (18676): Guest Log: Copied input files into RunAtlas.
2025-07-24 16:06:49 (18676): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-24 16:06:49 (18676): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-24 16:06:49 (18676): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-24 16:06:49 (18676): Guest Log: Further information can be found at the LHC@home message board.
2025-07-24 16:07:19 (18676): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-24 16:07:22 (18676): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-24 16:07:22 (18676): Guest Log: 2.6.3.0 1562 0 32116 148713 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-24 16:07:23 (18676): Guest Log: copied the webapp to /var/www
2025-07-24 16:07:23 (18676): Guest Log: ATHENA_PROC_NUMBER=2
2025-07-24 16:07:23 (18676): Guest Log: ATHENA_CORE_NUMBER=2
2025-07-24 16:07:25 (18676): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-24 16:07:25 (18676): Guest Log:  *** Starting ATLAS job. (PandaID=6744922371 taskID=45743349) ***
2025-07-24 17:45:45 (18676): Status Report: Elapsed Time: '6000.000000'
2025-07-24 17:45:45 (18676): Status Report: CPU Time: '6097.343750'
2025-07-24 19:25:49 (18676): Status Report: Elapsed Time: '12000.000000'
2025-07-24 19:25:49 (18676): Status Report: CPU Time: '13315.281250'
2025-07-24 21:05:54 (18676): Status Report: Elapsed Time: '18000.000000'
2025-07-24 21:05:54 (18676): Status Report: CPU Time: '20533.359375'
2025-07-24 22:45:59 (18676): Status Report: Elapsed Time: '24000.000000'
2025-07-24 22:45:59 (18676): Status Report: CPU Time: '27751.437500'
2025-07-25 00:26:04 (18676): Status Report: Elapsed Time: '30000.000000'
2025-07-25 00:26:04 (18676): Status Report: CPU Time: '34970.515625'
2025-07-25 02:06:09 (18676): Status Report: Elapsed Time: '36000.000000'
2025-07-25 02:06:09 (18676): Status Report: CPU Time: '42189.343750'
2025-07-25 03:46:15 (18676): Status Report: Elapsed Time: '42000.000000'
2025-07-25 03:46:15 (18676): Status Report: CPU Time: '49409.359375'
2025-07-25 05:26:24 (18676): Status Report: Elapsed Time: '48000.000000'
2025-07-25 05:26:24 (18676): Status Report: CPU Time: '56627.437500'
2025-07-25 07:06:29 (18676): Status Report: Elapsed Time: '54000.000000'
2025-07-25 07:06:29 (18676): Status Report: CPU Time: '63846.140625'
2025-07-25 08:46:34 (18676): Status Report: Elapsed Time: '60000.000000'
2025-07-25 08:46:34 (18676): Status Report: CPU Time: '71064.640625'
2025-07-25 10:26:39 (18676): Status Report: Elapsed Time: '66000.000000'
2025-07-25 10:26:39 (18676): Status Report: CPU Time: '78283.296875'
2025-07-25 12:06:44 (18676): Status Report: Elapsed Time: '72000.000000'
2025-07-25 12:06:44 (18676): Status Report: CPU Time: '85501.781250'
2025-07-25 13:15:36 (18676): Guest Log:  *** Job finished ***
2025-07-25 13:15:36 (18676): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:13,941 | INFO     | all workflow threads have been joined
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:13,941 | INFO     | end of generic workflow (traces error code: 0)
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:13,942 | INFO     | traces error code: 0
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:13,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,325 | INFO     | PID=5890 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,327 | INFO     | found 0 job(s) in 20 queues
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,327 | INFO     | [monitor] control thread has ended
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,481 [wrapper] ==== pilot stdout END ====
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,530 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,534 [wrapper] pilotpid: 5890
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,539 [wrapper] Pilot exit status: 0
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,667 [wrapper] pandaids: 6744922371
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,705 [wrapper] cleanup supervisor_pilot 28421 5891
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,710 [wrapper] Test setup, not cleaning
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,715 [wrapper] apfmon messages muted
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,766 [wrapper] ==== wrapper stdout END ====
2025-07-25 13:15:36 (18676): Guest Log: 2025-07-25 17:15:34,771 [wrapper] ==== wrapper stderr END ====
2025-07-25 13:15:36 (18676): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 13:15:36 (18676): Guest Log:     "exeErrorCode": 0,
2025-07-25 13:15:36 (18676): Guest Log:     "exeErrorDiag": "",
2025-07-25 13:15:36 (18676): Guest Log:     "pilotErrorCode": 0,
2025-07-25 13:15:36 (18676): Guest Log:     "pilotErrorDiag": "",
2025-07-25 13:15:36 (18676): Guest Log:  *** Listing of results directory ***
2025-07-25 13:15:36 (18676): Guest Log: total 220052
2025-07-25 13:15:36 (18676): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 24 18:26 pilot3.tar.gz
2025-07-25 13:15:36 (18676): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 24 18:44 queuedata.json
2025-07-25 13:15:36 (18676): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 24 18:45 runpilot2-wrapper.sh
2025-07-25 13:15:36 (18676): Guest Log: -rwxr-xr-x. 1 atlas atlas      9026 Jul 24 20:06 init_data.xml
2025-07-25 13:15:36 (18676): Guest Log: -rwxr-xr-x. 1 atlas atlas    542886 Jul 24 20:06 input.tar.gz
2025-07-25 13:15:36 (18676): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 24 20:06 start_atlas.sh
2025-07-25 13:15:36 (18676): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 24 20:06 EVNT.45743347._000336.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 13:15:36 (18676): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Jul 24 20:07 pandaJob.out
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas    979685 Jul 24 20:09 agis_schedconf.cvmfs.json
2025-07-25 13:15:36 (18676): Guest Log: drwx------. 4 atlas atlas      4096 Jul 24 20:09 pilot3
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas 209770426 Jul 25 17:13 HITS.45743349._006482.pool.root.1
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas      1027 Jul 25 17:14 memory_monitor_summary.json
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 25 17:14 agis_ddmendpoints.agis.ALL.json
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas    712304 Jul 25 17:14 log.45743349._006482.job.log.tgz.1
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas      7821 Jul 25 17:15 heartbeat.json
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas        95 Jul 25 17:15 pilot_heartbeat.json
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas       744 Jul 25 17:15 pilotlog.txt
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas   5165041 Jul 25 17:15 log.45743349._006482.job.log.1
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas       357 Jul 25 17:15 output.list
2025-07-25 13:15:36 (18676): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 25 17:15 runtime_log
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas   5898240 Jul 25 17:15 result.tar.gz
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas       668 Jul 25 17:15 RYgNDmx7Fz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9ANLDmcq4oOm.diag
2025-07-25 13:15:36 (18676): Guest Log: -rw-r--r--. 1 atlas atlas      8618 Jul 25 17:15 runtime_log.err
2025-07-25 13:15:36 (18676): Guest Log: Looking for outputfile HITS.45743349._006482.pool.root.1
2025-07-25 13:15:36 (18676): Guest Log: HITS file was successfully produced
2025-07-25 13:15:36 (18676): Guest Log: -rw-------. 1 atlas atlas 209770426 Jul 25 17:13 /home/atlas/RunAtlas/HITS.45743349._006482.pool.root.1
2025-07-25 13:15:38 (18676): Guest Log: Successfully finished the ATLAS job!
2025-07-25 13:15:38 (18676): Guest Log: Copying the results back to the shared directory!
2025-07-25 13:15:39 (18676): Guest Log:  *** Contents of shared directory: ***
2025-07-25 13:15:39 (18676): Guest Log: total 351916
2025-07-25 13:15:39 (18676): Guest Log: -rwxrwxrwx. 1 root root 144116924 Jul 24 20:05 ATLAS.root_0
2025-07-25 13:15:39 (18676): Guest Log: -rwxrwxrwx. 1 root root 209770426 Jul 25 17:15 HITS.pool.root.1
2025-07-25 13:15:39 (18676): Guest Log: -rwxrwxrwx. 1 root root      9026 Jul 24 20:05 init_data.xml
2025-07-25 13:15:39 (18676): Guest Log: -rwxrwxrwx. 1 root root    542886 Jul 24 19:48 input.tar.gz
2025-07-25 13:15:39 (18676): Guest Log: -rwxrwxrwx. 1 root root   5898240 Jul 25 17:15 result.tar.gz
2025-07-25 13:15:39 (18676): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 24 19:48 start_atlas.sh
2025-07-25 13:15:39 (18676): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 13:15:39 (18676): VM Completion File Detected.
2025-07-25 13:15:39 (18676): Powering off VM.
2025-07-25 13:15:40 (18676): Successfully stopped VM.
2025-07-25 13:15:40 (18676): Deregistering VM. (boinc_4f25dc89af16cb6b, slot#2)
2025-07-25 13:15:40 (18676): Removing network bandwidth throttle group from VM.
2025-07-25 13:15:40 (18676): Removing VM from VirtualBox.
13:15:46 (18676): called boinc_finish(0)

</stderr_txt>
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