Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:03:33 (2081969): wrapper (7.7.26015): starting
13:03:33 (2081969): wrapper: running run_atlas (--nthreads 12)
[2025-07-24 13:03:33] Arguments: --nthreads 12
[2025-07-24 13:03:33] Threads: 12
[2025-07-24 13:03:33] Checking for CVMFS
[2025-07-24 13:03:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 13:03:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 13:03:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 13:03:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 13:03:35] 2.11.5.0 10593 21498 218896 148713 3 278 40969613 45568000 20060 130560 0 173790042 99.760 130271344 26250 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-24 13:03:35] CVMFS is ok
[2025-07-24 13:03:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 13:03:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 13:03:35] Further information can be found at the LHC@home message board.
[2025-07-24 13:03:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 13:03:35] Checking for apptainer binary...
[2025-07-24 13:03:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 13:03:35] Running /usr/bin/apptainer --version
[2025-07-24 13:03:35] apptainer version 1.4.1-1.el9
[2025-07-24 13:03:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 13:03:36] wns0067.triumf.lcg
[2025-07-24 13:03:36] apptainer works
[2025-07-24 13:03:36] Set ATHENA_PROC_NUMBER=12
[2025-07-24 13:03:36] Set ATHENA_CORE_NUMBER=12
[2025-07-24 13:03:36] Starting ATLAS job with PandaID=6744921654
[2025-07-24 13:03:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 13:08:27]  *** The last 200 lines of the pilot log: ***
[2025-07-24 13:08:27] 2025-07-24 20:07:54,248 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 13:08:27] 2025-07-24 20:07:54,274 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 13:08:27] 2025-07-24 20:07:54,274 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 13:08:27] 2025-07-24 20:07:54,274 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | WARNING  | wrong length of table data, x=[1753387511.0], y=[1121.0] (must be same and length>=4)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | could have reported an average CPU frequency of 2622 MHz (4 samples)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | ..............................
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . Timing measurements:
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . get job = 0 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . initial setup = 2 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . payload setup = 19 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . stage-in = 0 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . payload execution = 43 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . stage-out = 1 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . log creation = 0 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | ..............................
[2025-07-24 13:08:27] 2025-07-24 20:07:54,276 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 13:08:27] 2025-07-24 20:07:54,276 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744921654/pilotlog.txt
[2025-07-24 13:08:27] 2025-07-24 20:07:54,333 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-24 13:08:27] - Log from pilotlog.txt -
[2025-07-24 13:08:27] 2025-07-24 20:07:54,247 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744921654/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,247 | INFO     | extracted standard info from prmon json
[2025-07-24 13:08:27] 2025-07-24 20:07:54,248 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 13:08:27] 2025-07-24 20:07:54,274 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 13:08:27] 2025-07-24 20:07:54,274 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 13:08:27] 2025-07-24 20:07:54,274 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | WARNING  | wrong length of table data, x=[1753387511.0], y=[1121.0] (must be same and length>=4)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | could have reported an average CPU frequency of 2622 MHz (4 samples)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | ..............................
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . Timing measurements:
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . get job = 0 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . initial setup = 2 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . payload setup = 19 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . stage-in = 0 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . payload execution = 43 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . stage-out = 1 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . log creation = 0 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | ..............................
[2025-07-24 13:08:27] 2025-07-24 20:07:54,276 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 13:08:27] 2025-07-24 20:07:54,276 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744921654/pilotlog.txt
[2025-07-24 13:08:27] 2025-07-24 20:07:54,333 | WARNING  | 
[2025-07-24 13:08:27] [begin log extracts]
[2025-07-24 13:08:27] - Log from pilotlog.txt -
[2025-07-24 13:08:27] 2025-07-24 20:07:54,247 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744921654/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,247 | INFO     | extracted standard info from prmon json
[2025-07-24 13:08:27] 2025-07-24 20:07:54,248 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 13:08:27] 2025-07-24 20:07:54,274 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 13:08:27] 2025-07-24 20:07:54,274 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 13:08:27] 2025-07-24 20:07:54,274 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | WARNING  | wrong length of table data, x=[1753387511.0], y=[1121.0] (must be same and length>=4)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | could have reported an average CPU frequency of 2622 MHz (4 samples)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | ..............................
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . Timing measurements:
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . get job = 0 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . initial setup = 2 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . payload setup = 19 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . stage-in = 0 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . payload execution = 43 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . stage-out = 1 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | . log creation = 0 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,275 | INFO     | ..............................
[2025-07-24 13:08:27] 2025-07-24 20:07:54,276 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 13:08:27] 2025-07-24 20:07:54,276 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744921654/pilotlog.txt
[2025-07-24 13:08:27] [end log extracts]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,333 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,334 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-24 13:08:27] 2025-07-24 20:07:54,538 | INFO     | 
[2025-07-24 13:08:27] 2025-07-24 20:07:54,538 | INFO     | job summary report
[2025-07-24 13:08:27] 2025-07-24 20:07:54,538 | INFO     | --------------------------------------------------
[2025-07-24 13:08:27] 2025-07-24 20:07:54,538 | INFO     | PanDA job id: 6744921654
[2025-07-24 13:08:27] 2025-07-24 20:07:54,538 | INFO     | task id: 45743349
[2025-07-24 13:08:27] 2025-07-24 20:07:54,538 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-24 13:05:25,968 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-24 13:08:27] 2025-07-24 20:07:54,538 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 13:08:27] 2025-07-24 20:07:54,538 | INFO     | pilot state: failed 
[2025-07-24 13:08:27] 2025-07-24 20:07:54,538 | INFO     | transexitcode: 65
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | exeerrorcode: 65
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | exitcode: 65
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | cpuconsumptiontime: 16 s
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | nevents: 0
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | neventsw: 0
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | pid: 2091887
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | pgrp: 2091887
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | corecount: 12
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | event service: False
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | sizes: {0: 2397466, 11: 2397756, 21: 2397756, 67: 2421160, 70: 2425452, 73: 2425480, 203: 2425774}
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | --------------------------------------------------
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | 
[2025-07-24 13:08:27] 2025-07-24 20:07:54,539 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-24 13:08:27] 2025-07-24 20:07:54,554 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,554 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,554 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,554 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,554 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,554 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,554 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,554 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | job 6744921654 has completed (purged errors)
[2025-07-24 13:08:27] 2025-07-24 20:07:54,555 | INFO     | overall cleanup function is called
[2025-07-24 13:08:27] 2025-07-24 20:07:55,561 | INFO     | --- collectZombieJob: --- 10, [2091887]
[2025-07-24 13:08:27] 2025-07-24 20:07:55,561 | INFO     | zombie collector waiting for pid 2091887
[2025-07-24 13:08:27] 2025-07-24 20:07:55,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 13:08:27] 2025-07-24 20:07:55,561 | INFO     | collected zombie processes
[2025-07-24 13:08:27] 2025-07-24 20:07:55,561 | INFO     | will attempt to kill all subprocesses of pid=2091887
[2025-07-24 13:08:27] 2025-07-24 20:07:56,170 | INFO     | process IDs to be killed: [2091887] (in reverse order)
[2025-07-24 13:08:27] 2025-07-24 20:07:56,244 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 13:08:27] 2025-07-24 20:07:56,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 13:08:27] 2025-07-24 20:07:56,276 | INFO     | did not find any defunct processes belonging to 2091887
[2025-07-24 13:08:27] 2025-07-24 20:07:56,305 | INFO     | did not find any defunct processes belonging to 2091887
[2025-07-24 13:08:27] 2025-07-24 20:07:56,306 | INFO     | ready for new job
[2025-07-24 13:08:27] 2025-07-24 20:07:56,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 13:08:27] 2025-07-24 20:07:56,307 | INFO     | ***************************************
[2025-07-24 13:08:27] 2025-07-24 20:07:56,307 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 13:08:27] 2025-07-24 20:07:56,307 | INFO     | ***************************************
[2025-07-24 13:08:27] 2025-07-24 20:07:56,307 | INFO     | 
[2025-07-24 13:08:27] 2025-07-24 20:07:56,316 | INFO     | architecture information:
[2025-07-24 13:08:27] 2025-07-24 20:07:56,325 | INFO     | executing command: cat /etc/os-release
[2025-07-24 13:08:27] 2025-07-24 20:07:56,425 | INFO     | cat /etc/os-release:
[2025-07-24 13:08:27] NAME="CentOS Linux"
[2025-07-24 13:08:27] VERSION="7 (Core)"
[2025-07-24 13:08:27] ID="centos"
[2025-07-24 13:08:27] ID_LIKE="rhel fedora"
[2025-07-24 13:08:27] VERSION_ID="7"
[2025-07-24 13:08:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 13:08:27] ANSI_COLOR="0;31"
[2025-07-24 13:08:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 13:08:27] HOME_URL="https://www.centos.org/"
[2025-07-24 13:08:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 13:08:27] 
[2025-07-24 13:08:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 13:08:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 13:08:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 13:08:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 13:08:27] 
[2025-07-24 13:08:27] 2025-07-24 20:07:56,425 | INFO     | ***************************************
[2025-07-24 13:08:27] 2025-07-24 20:07:56,929 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-24 13:08:27] 2025-07-24 20:07:56,978 | INFO     | sufficient remaining disk space (2022093881344 B)
[2025-07-24 13:08:27] 2025-07-24 20:07:56,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 13:08:27] 2025-07-24 20:07:56,978 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 13:08:27] 2025-07-24 20:07:56,978 | INFO     | update_server=False
[2025-07-24 13:08:27] 2025-07-24 20:07:56,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 13:08:27] 2025-07-24 20:07:56,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 13:08:27] 2025-07-24 20:07:57,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 13:08:27] 2025-07-24 20:07:57,004 | INFO     | aborting loop
[2025-07-24 13:08:27] 2025-07-24 20:07:57,401 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 13:08:27] 2025-07-24 20:07:57,884 | INFO     | all data control threads have been joined
[2025-07-24 13:08:27] 2025-07-24 20:07:57,891 | INFO     | all payload control threads have been joined
[2025-07-24 13:08:27] 2025-07-24 20:07:57,984 | INFO     | [job] retrieve thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:58,010 | INFO     | [job] job monitor thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:58,038 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:58,348 | INFO     | all job control threads have been joined
[2025-07-24 13:08:27] 2025-07-24 20:07:58,363 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:58,402 | INFO     | [payload] validate_post thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:58,663 | INFO     | [job] validate thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:58,890 | INFO     | [data] control thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:58,897 | INFO     | [payload] control thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:59,165 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:59,332 | INFO     | [data] copytool_in thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:59,338 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:59,353 | INFO     | [job] control thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:59,393 | INFO     | [payload] failed_post thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:59,411 | INFO     | [data] copytool_out thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:07:59,554 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 13:08:27] 2025-07-24 20:08:00,560 | INFO     | [job] queue monitor thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:08:00,988 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 13:08:27] 2025-07-24 20:08:01,566 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139782211315520)>', '<ExcThread(monitor, started 139781438691072)>']
[2025-07-24 13:08:27] 2025-07-24 20:08:06,593 | INFO     | all workflow threads have been joined
[2025-07-24 13:08:27] 2025-07-24 20:08:06,593 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 13:08:27] 2025-07-24 20:08:06,593 | INFO     | traces error code: 0
[2025-07-24 13:08:27] 2025-07-24 20:08:06,594 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 13:08:27] 2025-07-24 20:08:26,841 | INFO     | PID=2085553 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 13:08:27] 2025-07-24 20:08:26,842 | INFO     | .. there are 35 such processes running
[2025-07-24 13:08:27] 2025-07-24 20:08:26,842 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 13:08:27] 2025-07-24 20:08:26,842 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 13:08:27] 2025-07-24 20:08:26,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 13:08:27] 2025-07-24 20:08:26,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 13:08:27] 2025-07-24 20:08:26,842 | INFO     | [monitor] control thread has ended
[2025-07-24 13:08:27] 2025-07-24 20:08:27,517 [wrapper] ==== pilot stdout END ====
[2025-07-24 13:08:27] 2025-07-24 20:08:27,543 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 13:08:27] 2025-07-24 20:08:27,556 [wrapper] pilotpid: 2085553
[2025-07-24 13:08:27] 2025-07-24 20:08:27,579 [wrapper] Pilot exit status: 0
[2025-07-24 13:08:27] 2025-07-24 20:08:27,650 [wrapper] pandaids: 6744921654
[2025-07-24 13:08:27] 2025-07-24 20:08:27,699 [wrapper] cleanup supervisor_pilot 2085559 2085554
[2025-07-24 13:08:27] 2025-07-24 20:08:27,701 [wrapper] Test setup, not cleaning
[2025-07-24 13:08:27] 2025-07-24 20:08:27,703 [wrapper] apfmon messages muted
[2025-07-24 13:08:27] 2025-07-24 20:08:27,705 [wrapper] ==== wrapper stdout END ====
[2025-07-24 13:08:27] 2025-07-24 20:08:27,707 [wrapper] ==== wrapper stderr END ====
[2025-07-24 13:08:27]  *** Error codes and diagnostics ***
[2025-07-24 13:08:27]     "exeErrorCode": 65,
[2025-07-24 13:08:27]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 13:08:27]     "pilotErrorCode": 1305,
[2025-07-24 13:08:27]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 13:08:27]  *** Listing of results directory ***
[2025-07-24 13:08:27] total 227320
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc    530466 Jul 24 11:26 pilot3.tar.gz
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc      5112 Jul 24 11:30 queuedata.json
[2025-07-24 13:08:27] -rwx------. 1 boinc boinc     36292 Jul 24 11:32 runpilot2-wrapper.sh
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc       100 Jul 24 13:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 13:08:27] -rwxr-xr-x. 1 boinc boinc      7986 Jul 24 13:03 run_atlas
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc       105 Jul 24 13:03 job.xml
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc      6596 Jul 24 13:03 init_data.xml
[2025-07-24 13:08:27] -rw-r--r--. 2 boinc boinc 228693530 Jul 24 13:03 EVNT.45743347._000316.pool.root.1
[2025-07-24 13:08:27] -rw-r--r--. 2 boinc boinc     15095 Jul 24 13:03 start_atlas.sh
[2025-07-24 13:08:27] drwxrwx--x. 2 boinc boinc      4096 Jul 24 13:03 shared
[2025-07-24 13:08:27] -rw-r--r--. 2 boinc boinc    542889 Jul 24 13:03 input.tar.gz
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc         0 Jul 24 13:03 boinc_lockfile
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc      2560 Jul 24 13:03 pandaJob.out
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc    979685 Jul 24 13:03 agis_schedconf.cvmfs.json
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc   1593052 Jul 24 13:03 agis_ddmendpoints.agis.ALL.json
[2025-07-24 13:08:27] drwx------. 4 boinc boinc      4096 Jul 24 13:03 pilot3
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc       523 Jul 24 13:05 boinc_task_state.xml
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc       962 Jul 24 13:05 memory_monitor_summary.json
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc     21398 Jul 24 13:05 log.45743349._006128.job.log.tgz.1
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc      8401 Jul 24 13:07 heartbeat.json
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc        22 Jul 24 13:08 wrapper_checkpoint.txt
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc      8192 Jul 24 13:08 boinc_mmap_file
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc       823 Jul 24 13:08 pilotlog.txt
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc        95 Jul 24 13:08 pilot_heartbeat.json
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc     80771 Jul 24 13:08 log.45743349._006128.job.log.1
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc       188 Jul 24 13:08 output.list
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc       620 Jul 24 13:08 runtime_log
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc    122880 Jul 24 13:08 result.tar.gz
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc       643 Jul 24 13:08 V9EMDm4uFz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmo7MLDmHxewVo.diag
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc      8485 Jul 24 13:08 runtime_log.err
[2025-07-24 13:08:27] -rw-r--r--. 1 boinc boinc     21793 Jul 24 13:08 stderr.txt
[2025-07-24 13:08:27] No HITS result produced
[2025-07-24 13:08:27]  *** Contents of shared directory: ***
[2025-07-24 13:08:27] total 224008
[2025-07-24 13:08:27] -rw-r--r--. 2 boinc boinc 228693530 Jul 24 13:03 ATLAS.root_0
[2025-07-24 13:08:27] -rw-r--r--. 2 boinc boinc     15095 Jul 24 13:03 start_atlas.sh
[2025-07-24 13:08:27] -rw-r--r--. 2 boinc boinc    542889 Jul 24 13:03 input.tar.gz
[2025-07-24 13:08:27] -rw-------. 1 boinc boinc    122880 Jul 24 13:08 result.tar.gz
13:08:29 (2081969): run_atlas exited; CPU time 26.175066
13:08:29 (2081969): called boinc_finish(0)

</stderr_txt>
]]>

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