Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-24 21:02:50 (9752): Detected: vboxwrapper 26206
2025-07-24 21:02:50 (9752): Detected: BOINC client v7.16.20
2025-07-24 21:02:51 (9752): Detected: VirtualBox VboxManage Interface (Version: 6.1.32)
2025-07-24 21:02:51 (9752): Successfully copied 'init_data.xml' to the shared directory.
2025-07-24 21:02:52 (9752): Create VM. (boinc_6f75a7b7510e3652, slot#1)
2025-07-24 21:02:53 (9752): Setting Memory Size for VM. (4400MB)
2025-07-24 21:02:53 (9752): Setting CPU Count for VM. (4)
2025-07-24 21:02:53 (9752): Setting Chipset Options for VM.
2025-07-24 21:02:54 (9752): Setting Graphics Controller Options for VM.
2025-07-24 21:02:54 (9752): Setting Boot Options for VM.
2025-07-24 21:02:54 (9752): Setting Network Configuration for NAT.
2025-07-24 21:02:54 (9752): Enabling VM Network Access.
2025-07-24 21:02:55 (9752): Disabling USB Support for VM.
2025-07-24 21:02:55 (9752): Disabling COM Port Support for VM.
2025-07-24 21:02:55 (9752): Disabling LPT Port Support for VM.
2025-07-24 21:02:56 (9752): Disabling Audio Support for VM.
2025-07-24 21:02:56 (9752): Disabling Clipboard Support for VM.
2025-07-24 21:02:56 (9752): Disabling Drag and Drop Support for VM.
2025-07-24 21:02:56 (9752): Adding storage controller(s) to VM.
2025-07-24 21:02:57 (9752): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-24 21:03:01 (9752): Adding VirtualBox Guest Additions to VM.
2025-07-24 21:03:03 (9752): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-24 21:03:04 (9752): forwarding host port 61814 to guest port 80
2025-07-24 21:03:06 (9752): Enabling remote desktop for VM.
2025-07-24 21:03:07 (9752): Required extension pack not installed, remote desktop not enabled.
2025-07-24 21:03:07 (9752): Enabling shared directory for VM.
2025-07-24 21:03:09 (9752): Starting VM using VBoxManage interface. (boinc_6f75a7b7510e3652, slot#1)
2025-07-24 21:03:16 (9752): Successfully started VM. (PID = '9824')
2025-07-24 21:03:16 (9752): Reporting VM Process ID to BOINC.
2025-07-24 21:03:16 (9752): Guest Log: BIOS: VirtualBox 6.1.32
2025-07-24 21:03:16 (9752): Guest Log: CPUID EDX: 0x178bfbff
2025-07-24 21:03:16 (9752): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-24 21:03:16 (9752): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-24 21:03:16 (9752): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-24 21:03:16 (9752): Detected: Web Application Enabled (http://localhost:61814)
2025-07-24 21:03:16 (9752): Preference change detected
2025-07-24 21:03:16 (9752): Setting CPU throttle for VM. (50%)
2025-07-24 21:03:17 (9752): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-24 21:03:18 (9752): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-24 21:03:18 (9752): Guest Log: BIOS: Booting from Hard Disk...
2025-07-24 21:04:06 (9752): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-24 21:04:06 (9752): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-24 21:04:06 (9752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-24 21:04:20 (9752): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-24 21:04:20 (9752): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-24 21:04:38 (9752): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-24 21:04:38 (9752): Guest Log: 00:00:00.000282 main     Log opened 2025-07-24T21:04:35.546344000Z
2025-07-24 21:04:38 (9752): Guest Log: 00:00:00.000515 main     OS Product: Linux
2025-07-24 21:04:38 (9752): Guest Log: 00:00:00.000577 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-24 21:04:38 (9752): Guest Log: 00:00:00.000629 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-24 21:04:38 (9752): Guest Log: 00:00:00.000681 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-24 21:04:38 (9752): Guest Log: 00:00:00.000682 main     Process ID: 1270
2025-07-24 21:04:38 (9752): Guest Log: 00:00:00.000683 main     Package type: LINUX_64BITS_GENERIC
2025-07-24 21:04:38 (9752): Guest Log: 00:00:00.002547 main     5.2.32 r132073 started. Verbose level = 0
2025-07-24 21:04:38 (9752): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-24 21:04:38 (9752): Guest Log: [INFO] Mounting shared directory
2025-07-24 21:04:38 (9752): Guest Log: [INFO] Checking for init_data.xml
2025-07-24 21:04:48 (9752): Guest Log: 00:00:10.006842 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 715 922 000ns (GuestNow=1 753 405 487 266 881 000 ns GuestLast=1 753 391 075 550 959 000 ns fSetTimeLastLoop=true )
2025-07-24 21:06:44 (9752): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-24 21:06:44 (9752): Guest Log: [INFO] Detected branch: prod
2025-07-24 21:06:46 (9752): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-24 21:06:46 (9752): Guest Log: Copying input files
2025-07-24 21:06:51 (9752): Guest Log: Copied input files into RunAtlas.
2025-07-24 21:06:51 (9752): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-24 21:06:51 (9752): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-24 21:06:51 (9752): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-24 21:06:51 (9752): Guest Log: Further information can be found at the LHC@home message board.
2025-07-24 21:08:47 (9752): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-24 21:08:50 (9752): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-24 21:08:50 (9752): Guest Log: 2.6.3.0 1587 3 32216 148720 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-24 21:08:53 (9752): Guest Log: copied the webapp to /var/www
2025-07-24 21:08:53 (9752): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-24 21:08:53 (9752): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-24 21:08:55 (9752): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-24 21:08:55 (9752): Guest Log:  *** Starting ATLAS job. (PandaID=6744844064 taskID=45743349) ***
2025-07-24 22:43:18 (9752): Status Report: Elapsed Time: '6000.246498'
2025-07-24 22:43:18 (9752): Status Report: CPU Time: '11196.316571'
2025-07-25 00:23:22 (9752): Status Report: Elapsed Time: '12000.246498'
2025-07-25 00:23:22 (9752): Status Report: CPU Time: '25593.555260'
2025-07-25 02:03:25 (9752): Status Report: Elapsed Time: '18000.246498'
2025-07-25 02:03:25 (9752): Status Report: CPU Time: '39986.691123'
2025-07-25 03:43:28 (9752): Status Report: Elapsed Time: '24000.246498'
2025-07-25 03:43:28 (9752): Status Report: CPU Time: '54381.168595'
2025-07-25 05:23:32 (9752): Status Report: Elapsed Time: '30000.246498'
2025-07-25 05:23:32 (9752): Status Report: CPU Time: '68775.692867'
2025-07-25 07:03:35 (9752): Status Report: Elapsed Time: '36000.246498'
2025-07-25 07:03:35 (9752): Status Report: CPU Time: '83165.895911'
2025-07-25 08:43:38 (9752): Status Report: Elapsed Time: '42000.246498'
2025-07-25 08:43:38 (9752): Status Report: CPU Time: '97490.297734'
2025-07-25 10:23:41 (9752): Status Report: Elapsed Time: '48000.246498'
2025-07-25 10:23:41 (9752): Status Report: CPU Time: '110835.528080'
2025-07-25 12:03:42 (9752): Status Report: Elapsed Time: '54000.246498'
2025-07-25 12:03:42 (9752): Status Report: CPU Time: '111109.341035'
2025-07-25 13:43:43 (9752): Status Report: Elapsed Time: '60000.246498'
2025-07-25 13:43:43 (9752): Status Report: CPU Time: '111252.425152'
2025-07-25 14:21:02 (9752): Guest Log:  *** Job finished ***
2025-07-25 14:21:02 (9752): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:06,781 | INFO     | traces error code: 0
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:06,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,701 | INFO     | PID=6019 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,702 | INFO     | found 0 job(s) in 20 queues
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,703 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,703 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,703 | INFO     | [monitor] control thread has ended
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,909 [wrapper] ==== pilot stdout END ====
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,928 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,937 [wrapper] pilotpid: 6019
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:23,946 [wrapper] Pilot exit status: 0
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:17:42,545 [wrapper] supervise_pilot (15 min periods counter: 69)
2025-07-25 14:21:02 (9752): Guest Log: ./runpilot2-wrapper.sh: line 1018: /usr/bin/xargs: Input/output error
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:20:57,175 [wrapper] pandaids: 
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:20:57,251 [wrapper] cleanup supervisor_pilot 24136 6020
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:20:57,263 [wrapper] Test setup, not cleaning
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:20:57,273 [wrapper] apfmon messages muted
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:20:57,283 [wrapper] ==== wrapper stdout END ====
2025-07-25 14:21:02 (9752): Guest Log: 2025-07-25 18:20:57,292 [wrapper] ==== wrapper stderr END ====
2025-07-25 14:21:02 (9752): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 14:21:02 (9752): Guest Log:     "exeErrorCode": 68,
2025-07-25 14:21:02 (9752): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc::::ExcNoDictForClass: Can't find dictionary information for class: EventStreamInfo_p1\"\"",
2025-07-25 14:21:02 (9752): Guest Log:     "pilotErrorCode": 1305,
2025-07-25 14:21:02 (9752): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc:",
2025-07-25 14:21:02 (9752): Guest Log:  *** Listing of results directory ***
2025-07-25 14:21:02 (9752): Guest Log: total 10564
2025-07-25 14:21:02 (9752): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 24 17:03 pilot3.tar.gz
2025-07-25 14:21:02 (9752): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 24 17:21 queuedata.json
2025-07-25 14:21:02 (9752): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 24 17:21 runpilot2-wrapper.sh
2025-07-25 14:21:02 (9752): Guest Log: -rwxr-xr-x. 1 atlas atlas    6050 Jul 25 01:06 init_data.xml
2025-07-25 14:21:02 (9752): Guest Log: -rwxr-xr-x. 1 atlas atlas  542880 Jul 25 01:06 input.tar.gz
2025-07-25 14:21:02 (9752): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 25 01:06 start_atlas.sh
2025-07-25 14:21:02 (9752): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 25 01:06 EVNT.45743347._000199.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 14:21:02 (9752): Guest Log: -rw-r--r--. 1 atlas atlas    2560 Jul 25 01:08 pandaJob.out
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas  979709 Jul 25 01:14 agis_schedconf.cvmfs.json
2025-07-25 14:21:02 (9752): Guest Log: drwx------. 4 atlas atlas    4096 Jul 25 01:14 pilot3
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas    1036 Jul 25 14:55 memory_monitor_summary.json
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas  503282 Jul 25 14:59 log.45743349._003534.job.log.tgz.1
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas       0 Jul 25 15:03 agis_ddmendpoints.agis.ALL.json
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas      95 Jul 25 18:16 pilot_heartbeat.json
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas   10738 Jul 25 18:16 heartbeat.json
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas     744 Jul 25 18:17 pilotlog.txt
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas 3799572 Jul 25 18:20 log.45743349._003534.job.log.1
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas     188 Jul 25 18:20 output.list
2025-07-25 14:21:02 (9752): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 25 18:20 runtime_log
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas 4321280 Jul 25 18:20 result.tar.gz
2025-07-25 14:21:02 (9752): Guest Log: -rw-r--r--. 1 atlas atlas    8457 Jul 25 18:20 runtime_log.err
2025-07-25 14:21:02 (9752): Guest Log: -rw-------. 1 atlas atlas     664 Jul 25 18:20 NWkMDmmoEz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7lMLDmtP9m5m.diag
2025-07-25 14:21:02 (9752): Guest Log: Looking for outputfile HITS.45743349._003534.pool.root.1
2025-07-25 14:21:02 (9752): Guest Log: No HITS file was produced
2025-07-25 14:21:02 (9752): Guest Log: Successfully finished the ATLAS job!
2025-07-25 14:21:02 (9752): Guest Log: Copying the results back to the shared directory!
2025-07-25 14:21:02 (9752): Guest Log:  *** Contents of shared directory: ***
2025-07-25 14:21:02 (9752): Guest Log: total 145808
2025-07-25 14:21:02 (9752): Guest Log: -rwxrwxrwx. 1 root root 144414020 Jul 25 01:02 ATLAS.root_0
2025-07-25 14:21:02 (9752): Guest Log: -rwxrwxrwx. 1 root root      6050 Jul 25 01:02 init_data.xml
2025-07-25 14:21:02 (9752): Guest Log: -rwxrwxrwx. 1 root root    542880 Jul 24 18:27 input.tar.gz
2025-07-25 14:21:02 (9752): Guest Log: -rwxrwxrwx. 1 root root   4321280 Jul 25 18:21 result.tar.gz
2025-07-25 14:21:02 (9752): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 24 18:27 start_atlas.sh
2025-07-25 14:21:02 (9752): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 14:21:02 (9752): VM Completion File Detected.
2025-07-25 14:21:02 (9752): Powering off VM.
2025-07-25 14:21:04 (9752): Successfully stopped VM.
2025-07-25 14:21:04 (9752): Deregistering VM. (boinc_6f75a7b7510e3652, slot#1)
2025-07-25 14:21:05 (9752): Removing network bandwidth throttle group from VM.
2025-07-25 14:21:06 (9752): Removing VM from VirtualBox.
14:21:12 (9752): called boinc_finish(0)

</stderr_txt>
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