Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:20:52 (861963): wrapper (7.7.26015): starting
09:20:52 (861963): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 09:20:52] Arguments: --nthreads 4
[2025-07-27 09:20:52] Threads: 4
[2025-07-27 09:20:52] Checking for CVMFS
[2025-07-27 09:20:52] No cvmfs_config command found, will try listing directly
[2025-07-27 09:20:52] CVMFS is ok
[2025-07-27 09:20:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 09:20:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 09:20:52] Further information can be found at the LHC@home message board.
[2025-07-27 09:20:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 09:20:52] Checking for apptainer binary...
[2025-07-27 09:20:52] which: no apptainer in ((null))
[2025-07-27 09:20:52] apptainer is not installed, using version from CVMFS
[2025-07-27 09:20:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 09:20:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2025-07-27 09:20:52] apptainer works
[2025-07-27 09:20:52] Set ATHENA_PROC_NUMBER=4
[2025-07-27 09:20:52] Set ATHENA_CORE_NUMBER=4
[2025-07-27 09:20:52] Starting ATLAS job with PandaID=6744844129
[2025-07-27 09:20:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:53:42 (1214123): wrapper (7.7.26015): starting
13:53:42 (1214123): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 13:53:42] Arguments: --nthreads 4
[2025-07-27 13:53:42] Threads: 4
[2025-07-27 13:53:42] This job has been restarted, cleaning up previous attempt
[2025-07-27 13:53:42] Checking for CVMFS
[2025-07-27 13:53:42] No cvmfs_config command found, will try listing directly
[2025-07-27 13:53:42] CVMFS is ok
[2025-07-27 13:53:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:53:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:53:42] Further information can be found at the LHC@home message board.
[2025-07-27 13:53:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:53:42] Checking for apptainer binary...
[2025-07-27 13:53:42] which: no apptainer in ((null))
[2025-07-27 13:53:42] apptainer is not installed, using version from CVMFS
[2025-07-27 13:53:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:53:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2025-07-27 13:53:42] apptainer works
[2025-07-27 13:53:42] Set ATHENA_PROC_NUMBER=4
[2025-07-27 13:53:42] Set ATHENA_CORE_NUMBER=4
[2025-07-27 13:53:42] Starting ATLAS job with PandaID=6744844129
[2025-07-27 13:53:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:11:12]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:11:12] 2025-07-27 16:10:39,174 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6744844129/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:11:12] 2025-07-27 16:10:39,489 | INFO     | number of running child processes to parent process 1224511: 1
[2025-07-27 18:11:12] 2025-07-27 16:10:39,489 | INFO     | maximum number of monitored processes: 6
[2025-07-27 18:11:12] 2025-07-27 16:10:40,443 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:11:12] 2025-07-27 16:10:40,450 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2407.5623750000004
[2025-07-27 18:11:12] 2025-07-27 16:10:40,458 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6744844129/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:11:12] 2025-07-27 16:10:40,459 | INFO     | extracted standard info from prmon json
[2025-07-27 18:11:12] 2025-07-27 16:10:40,459 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:11:12] 2025-07-27 16:10:40,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:11:12] 2025-07-27 16:10:40,460 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:11:12] 2025-07-27 16:10:40,460 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:11:12] 2025-07-27 16:10:40,465 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:11:12] 2025-07-27 16:10:40,466 | INFO     | sum of square deviations: 4962187923.0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,468 | INFO     | sum of deviations: 9476694131.500004
[2025-07-27 18:11:12] 2025-07-27 16:10:40,468 | INFO     | mean x: 1753624913.5
[2025-07-27 18:11:12] 2025-07-27 16:10:40,468 | INFO     | mean y: 2351997.861111111
[2025-07-27 18:11:12] 2025-07-27 16:10:40,468 | INFO     | -- intersect: -3346688220.787144
[2025-07-27 18:11:12] 2025-07-27 16:10:40,468 | INFO     | intersect: -3346688220.787144
[2025-07-27 18:11:12] 2025-07-27 16:10:40,469 | INFO     | chi2: 1.473324950967775
[2025-07-27 18:11:12] 2025-07-27 16:10:40,469 | INFO     | sum of square deviations: 4672638308.0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,471 | INFO     | sum of deviations: 9225897663.999996
[2025-07-27 18:11:12] 2025-07-27 16:10:40,471 | INFO     | mean x: 1753624761.0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,472 | INFO     | mean y: 2351865.753036437
[2025-07-27 18:11:12] 2025-07-27 16:10:40,472 | INFO     | -- intersect: -3460095154.454557
[2025-07-27 18:11:12] 2025-07-27 16:10:40,472 | INFO     | intersect: -3460095154.454557
[2025-07-27 18:11:12] 2025-07-27 16:10:40,472 | INFO     | chi2: 1.4736646622479923
[2025-07-27 18:11:12] 2025-07-27 16:10:40,472 | INFO     | current chi2=1.4736646622479923 (change=-0.02305745789441184 %)
[2025-07-27 18:11:12] 2025-07-27 16:10:40,473 | INFO     | right removable region: 246
[2025-07-27 18:11:12] 2025-07-27 16:10:40,473 | INFO     | sum of square deviations: 4672638308.0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,475 | INFO     | sum of deviations: -19513343679.999996
[2025-07-27 18:11:12] 2025-07-27 16:10:40,475 | INFO     | mean x: 1753625066.0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,475 | INFO     | mean y: 2367073.4251012146
[2025-07-27 18:11:12] 2025-07-27 16:10:40,475 | INFO     | -- intersect: 7325657759.146346
[2025-07-27 18:11:12] 2025-07-27 16:10:40,476 | INFO     | intersect: 7325657759.146346
[2025-07-27 18:11:12] 2025-07-27 16:10:40,476 | INFO     | chi2: 0.16898227472952698
[2025-07-27 18:11:12] 2025-07-27 16:10:40,476 | INFO     | current chi2=0.16898227472952698 (change=88.5305495832044 %)
[2025-07-27 18:11:12] 2025-07-27 16:10:40,477 | INFO     | sum of square deviations: 4394577280.5
[2025-07-27 18:11:12] 2025-07-27 16:10:40,479 | INFO     | sum of deviations: -11332626939.499998
[2025-07-27 18:11:12] 2025-07-27 16:10:40,479 | INFO     | mean x: 1753625218.5
[2025-07-27 18:11:12] 2025-07-27 16:10:40,479 | INFO     | mean y: 2362571.623966942
[2025-07-27 18:11:12] 2025-07-27 16:10:40,479 | INFO     | -- intersect: 4524567808.779011
[2025-07-27 18:11:12] 2025-07-27 16:10:40,479 | INFO     | intersect: 4524567808.779011
[2025-07-27 18:11:12] 2025-07-27 16:10:40,480 | INFO     | chi2: 0.13332611199172253
[2025-07-27 18:11:12] 2025-07-27 16:10:40,480 | INFO     | current chi2=0.13332611199172253 (change=21.100534239390313 %)
[2025-07-27 18:11:12] 2025-07-27 16:10:40,480 | INFO     | left removable region: 20
[2025-07-27 18:11:12] 2025-07-27 16:10:40,481 | INFO     | sum of square deviations: 3579276412.5
[2025-07-27 18:11:12] 2025-07-27 16:10:40,482 | INFO     | sum of deviations: 6943975168.499999
[2025-07-27 18:11:12] 2025-07-27 16:10:40,482 | INFO     | mean x: 1753625340.5
[2025-07-27 18:11:12] 2025-07-27 16:10:40,483 | INFO     | mean y: 2351614.5707964604
[2025-07-27 18:11:12] 2025-07-27 16:10:40,483 | INFO     | -- intersect: -3399769209.838809
[2025-07-27 18:11:12] 2025-07-27 16:10:40,483 | INFO     | intersect: -3399769209.838809
[2025-07-27 18:11:12] 2025-07-27 16:10:40,483 | INFO     | chi2: 0.012164644586645621
[2025-07-27 18:11:12] 2025-07-27 16:10:40,483 | INFO     | -- intersect: -3399769209.838809
[2025-07-27 18:11:12] 2025-07-27 16:10:40,484 | INFO     | current memory leak: 1.94 B/s (using 226 data points, chi2=0.01)
[2025-07-27 18:11:12] 2025-07-27 16:10:40,484 | INFO     | could have reported an average CPU frequency of 2480 MHz (12 samples)
[2025-07-27 18:11:12] 2025-07-27 16:10:40,484 | INFO     | ..............................
[2025-07-27 18:11:12] 2025-07-27 16:10:40,485 | INFO     | . Timing measurements:
[2025-07-27 18:11:12] 2025-07-27 16:10:40,485 | INFO     | . get job = 0 s
[2025-07-27 18:11:12] 2025-07-27 16:10:40,485 | INFO     | . initial setup = 1 s
[2025-07-27 18:11:12] 2025-07-27 16:10:40,485 | INFO     | . payload setup = 6 s
[2025-07-27 18:11:12] 2025-07-27 16:10:40,485 | INFO     | . stage-in = 0 s
[2025-07-27 18:11:12] 2025-07-27 16:10:40,485 | INFO     | . payload execution = 15375 s
[2025-07-27 18:11:12] 2025-07-27 16:10:40,485 | INFO     | . stage-out = 1 s
[2025-07-27 18:11:12] 2025-07-27 16:10:40,485 | INFO     | . log creation = 0 s
[2025-07-27 18:11:12] 2025-07-27 16:10:40,485 | INFO     | ..............................
[2025-07-27 18:11:12] 2025-07-27 16:10:40,597 | INFO     | 
[2025-07-27 18:11:12] 2025-07-27 16:10:40,597 | INFO     | job summary report
[2025-07-27 18:11:12] 2025-07-27 16:10:40,597 | INFO     | --------------------------------------------------
[2025-07-27 18:11:12] 2025-07-27 16:10:40,598 | INFO     | PanDA job id: 6744844129
[2025-07-27 18:11:12] 2025-07-27 16:10:40,598 | INFO     | task id: 45743349
[2025-07-27 18:11:12] 2025-07-27 16:10:40,598 | INFO     | errors: (none)
[2025-07-27 18:11:12] 2025-07-27 16:10:40,598 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:11:12] 2025-07-27 16:10:40,598 | INFO     | pilot state: finished 
[2025-07-27 18:11:12] 2025-07-27 16:10:40,598 | INFO     | transexitcode: 0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,598 | INFO     | exeerrorcode: 0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,598 | INFO     | exeerrordiag: 
[2025-07-27 18:11:12] 2025-07-27 16:10:40,598 | INFO     | exitcode: 0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,599 | INFO     | exitmsg: OK
[2025-07-27 18:11:12] 2025-07-27 16:10:40,599 | INFO     | cpuconsumptiontime: 58620 s
[2025-07-27 18:11:12] 2025-07-27 16:10:40,599 | INFO     | nevents: 400
[2025-07-27 18:11:12] 2025-07-27 16:10:40,599 | INFO     | neventsw: 0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,599 | INFO     | pid: 1224511
[2025-07-27 18:11:12] 2025-07-27 16:10:40,599 | INFO     | pgrp: 1224511
[2025-07-27 18:11:12] 2025-07-27 16:10:40,599 | INFO     | corecount: 4
[2025-07-27 18:11:12] 2025-07-27 16:10:40,599 | INFO     | event service: False
[2025-07-27 18:11:12] 2025-07-27 16:10:40,599 | INFO     | sizes: {0: 2397309, 1: 2397508, 4: 2397770, 11: 2397798, 15386: 2428881, 15387: 2428880, 15389: 2438140, 15394: 2438278}
[2025-07-27 18:11:12] 2025-07-27 16:10:40,600 | INFO     | --------------------------------------------------
[2025-07-27 18:11:12] 2025-07-27 16:10:40,600 | INFO     | 
[2025-07-27 18:11:12] 2025-07-27 16:10:40,600 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2025-07-27 18:11:12] 2025-07-27 16:10:40,618 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,619 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,619 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,619 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,619 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,619 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,620 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,620 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,620 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,620 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,620 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,620 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,621 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,621 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,621 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,621 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:11:12] 2025-07-27 16:10:40,621 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,621 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:11:12] 2025-07-27 16:10:40,622 | INFO     | job 6744844129 has completed (purged errors)
[2025-07-27 18:11:12] 2025-07-27 16:10:40,622 | INFO     | overall cleanup function is called
[2025-07-27 18:11:12] 2025-07-27 16:10:41,630 | INFO     | --- collectZombieJob: --- 10, [1224511]
[2025-07-27 18:11:12] 2025-07-27 16:10:41,630 | INFO     | zombie collector waiting for pid 1224511
[2025-07-27 18:11:12] 2025-07-27 16:10:41,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:11:12] 2025-07-27 16:10:41,630 | INFO     | collected zombie processes
[2025-07-27 18:11:12] 2025-07-27 16:10:41,630 | INFO     | will attempt to kill all subprocesses of pid=1224511
[2025-07-27 18:11:12] 2025-07-27 16:10:41,922 | INFO     | process IDs to be killed: [1224511] (in reverse order)
[2025-07-27 18:11:12] 2025-07-27 16:10:42,005 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:11:12] 2025-07-27 16:10:42,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:11:12] 2025-07-27 16:10:42,013 | INFO     | did not find any defunct processes belonging to 1224511
[2025-07-27 18:11:12] 2025-07-27 16:10:42,019 | INFO     | did not find any defunct processes belonging to 1224511
[2025-07-27 18:11:12] 2025-07-27 16:10:42,019 | INFO     | ready for new job
[2025-07-27 18:11:12] 2025-07-27 16:10:42,020 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:11:12] 2025-07-27 16:10:42,022 | INFO     | ***************************************
[2025-07-27 18:11:12] 2025-07-27 16:10:42,022 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:11:12] 2025-07-27 16:10:42,022 | INFO     | ***************************************
[2025-07-27 18:11:12] 2025-07-27 16:10:42,022 | INFO     | 
[2025-07-27 18:11:12] 2025-07-27 16:10:42,025 | INFO     | architecture information:
[2025-07-27 18:11:12] 2025-07-27 16:10:42,025 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:11:12] 2025-07-27 16:10:42,039 | INFO     | cat /etc/os-release:
[2025-07-27 18:11:12] NAME="CentOS Linux"
[2025-07-27 18:11:12] VERSION="7 (Core)"
[2025-07-27 18:11:12] ID="centos"
[2025-07-27 18:11:12] ID_LIKE="rhel fedora"
[2025-07-27 18:11:12] VERSION_ID="7"
[2025-07-27 18:11:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:11:12] ANSI_COLOR="0;31"
[2025-07-27 18:11:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:11:12] HOME_URL="https://www.centos.org/"
[2025-07-27 18:11:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:11:12] 
[2025-07-27 18:11:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:11:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:11:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:11:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:11:12] 
[2025-07-27 18:11:12] 2025-07-27 16:10:42,039 | INFO     | ***************************************
[2025-07-27 18:11:12] 2025-07-27 16:10:42,542 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2025-07-27 18:11:12] 2025-07-27 16:10:42,555 | INFO     | sufficient remaining disk space (1656622153728 B)
[2025-07-27 18:11:12] 2025-07-27 16:10:42,555 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:11:12] 2025-07-27 16:10:42,555 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:11:12] 2025-07-27 16:10:42,555 | INFO     | update_server=False
[2025-07-27 18:11:12] 2025-07-27 16:10:42,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:11:12] 2025-07-27 16:10:42,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:11:12] 2025-07-27 16:10:42,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:11:12] 2025-07-27 16:10:42,809 | INFO     | all data control threads have been joined
[2025-07-27 18:11:12] 2025-07-27 16:10:43,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:11:12] 2025-07-27 16:10:43,002 | INFO     | aborting loop
[2025-07-27 18:11:12] 2025-07-27 16:10:43,134 | INFO     | all job control threads have been joined
[2025-07-27 18:11:12] 2025-07-27 16:10:43,397 | INFO     | all payload control threads have been joined
[2025-07-27 18:11:12] 2025-07-27 16:10:43,561 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:43,561 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:43,767 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:43,787 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:43,815 | INFO     | [data] control thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:43,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:11:12] 2025-07-27 16:10:44,007 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:44,054 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:44,140 | INFO     | [job] control thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:44,401 | INFO     | [payload] control thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:44,465 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:44,763 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:44,845 | INFO     | [job] validate thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:44,905 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:45,875 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:46,562 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:53,402 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:11:12] 2025-07-27 16:10:54,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:11:12] 2025-07-27 16:10:55,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22864388294464)>', '<ExcThread(monitor, started 22864149313280)>']
[2025-07-27 18:11:12] 2025-07-27 16:11:00,061 | INFO     | all workflow threads have been joined
[2025-07-27 18:11:12] 2025-07-27 16:11:00,062 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:11:12] 2025-07-27 16:11:00,062 | INFO     | traces error code: 0
[2025-07-27 18:11:12] 2025-07-27 16:11:00,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:11:12] 2025-07-27 16:11:12,208 | INFO     | PID=1217702 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:11:12] 2025-07-27 16:11:12,209 | INFO     | .. there are 7 such processes running
[2025-07-27 18:11:12] 2025-07-27 16:11:12,210 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:11:12] 2025-07-27 16:11:12,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:11:12] 2025-07-27 16:11:12,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:11:12] 2025-07-27 16:11:12,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:11:12] 2025-07-27 16:11:12,210 | INFO     | [monitor] control thread has ended
[2025-07-27 18:11:12] 2025-07-27 16:11:12,329 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:11:12] 2025-07-27 16:11:12,332 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:11:12] 2025-07-27 16:11:12,334 [wrapper] pilotpid: 1217702
[2025-07-27 18:11:12] 2025-07-27 16:11:12,336 [wrapper] Pilot exit status: 0
[2025-07-27 18:11:12] 2025-07-27 16:11:12,345 [wrapper] pandaids: 6744844129 6744844129
[2025-07-27 18:11:12] 2025-07-27 16:11:12,396 [wrapper] cleanup supervisor_pilot 1606144 1217703
[2025-07-27 18:11:12] 2025-07-27 16:11:12,399 [wrapper] Test setup, not cleaning
[2025-07-27 18:11:12] 2025-07-27 16:11:12,402 [wrapper] apfmon messages muted
[2025-07-27 18:11:12] 2025-07-27 16:11:12,404 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:11:12] 2025-07-27 16:11:12,407 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:11:12]  *** Error codes and diagnostics ***
[2025-07-27 18:11:12]     "exeErrorCode": 0,
[2025-07-27 18:11:12]     "exeErrorDiag": "",
[2025-07-27 18:11:12]     "pilotErrorCode": 0,
[2025-07-27 18:11:12]     "pilotErrorDiag": "",
[2025-07-27 18:11:12]  *** Listing of results directory ***
[2025-07-27 18:11:12] total 509828
[2025-07-27 18:11:12] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc    530466 Jul 24 19:03 pilot3.tar.gz
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc      5112 Jul 24 19:21 queuedata.json
[2025-07-27 18:11:12] -rwx------ 1 boinc boinc     36292 Jul 24 19:21 runpilot2-wrapper.sh
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc       100 Jul 27 09:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:11:12] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 09:20 run_atlas
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc       105 Jul 27 09:20 job.xml
[2025-07-27 18:11:12] -rw-r--r-- 3 boinc boinc 149559833 Jul 27 09:20 EVNT.45743347._000203.pool.root.1
[2025-07-27 18:11:12] -rw-r--r-- 3 boinc boinc 149559833 Jul 27 09:20 ATLAS.root_0
[2025-07-27 18:11:12] drwxrwx--x 2 boinc boinc      4096 Jul 27 09:20 shared
[2025-07-27 18:11:12] -rw-r--r-- 2 boinc boinc    542881 Jul 27 09:20 input.tar.gz
[2025-07-27 18:11:12] -rw-r--r-- 2 boinc boinc     15095 Jul 27 09:20 start_atlas.sh
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc         0 Jul 27 09:20 boinc_lockfile
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc      2560 Jul 27 13:53 pandaJob.out
[2025-07-27 18:11:12] -rw------- 1 boinc boinc    980109 Jul 27 13:53 agis_schedconf.cvmfs.json
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc      6430 Jul 27 15:22 init_data.xml
[2025-07-27 18:11:12] -rw------- 1 boinc boinc 215501704 Jul 27 18:09 HITS.45743349._003599.pool.root.1
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc       531 Jul 27 18:10 boinc_task_state.xml
[2025-07-27 18:11:12] -rw------- 1 boinc boinc      1038 Jul 27 18:10 memory_monitor_summary.json
[2025-07-27 18:11:12] -rw------- 1 boinc boinc   1593052 Jul 27 18:10 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:11:12] -rw------- 1 boinc boinc    351391 Jul 27 18:10 log.45743349._003599.job.log.tgz.1
[2025-07-27 18:11:12] -rw------- 1 boinc boinc      7840 Jul 27 18:10 heartbeat.json
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc        29 Jul 27 18:10 wrapper_checkpoint.txt
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc      8192 Jul 27 18:10 boinc_mmap_file
[2025-07-27 18:11:12] -rw------- 1 boinc boinc        97 Jul 27 18:11 pilot_heartbeat.json
[2025-07-27 18:11:12] -rw------- 1 boinc boinc       822 Jul 27 18:11 pilotlog.txt
[2025-07-27 18:11:12] -rw------- 1 boinc boinc   1435970 Jul 27 18:11 log.45743349._003599.job.log.1
[2025-07-27 18:11:12] -rw------- 1 boinc boinc       357 Jul 27 18:11 output.list
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc       620 Jul 27 18:11 runtime_log
[2025-07-27 18:11:12] -rw------- 1 boinc boinc   1802240 Jul 27 18:11 result.tar.gz
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc      9104 Jul 27 18:11 runtime_log.err
[2025-07-27 18:11:12] -rw------- 1 boinc boinc       790 Jul 27 18:11 3LxLDmmoEz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmb7wKDmS3abAn.diag
[2025-07-27 18:11:12] -rw-r--r-- 1 boinc boinc     22869 Jul 27 18:11 stderr.txt
[2025-07-27 18:11:12] HITS file was successfully produced:
[2025-07-27 18:11:12] -rw------- 1 boinc boinc 215501704 Jul 27 18:09 shared/HITS.pool.root.1
[2025-07-27 18:11:12]  *** Contents of shared directory: ***
[2025-07-27 18:11:12] total 358820
[2025-07-27 18:11:12] -rw-r--r-- 3 boinc boinc 149559833 Jul 27 09:20 ATLAS.root_0
[2025-07-27 18:11:12] -rw-r--r-- 2 boinc boinc    542881 Jul 27 09:20 input.tar.gz
[2025-07-27 18:11:12] -rw-r--r-- 2 boinc boinc     15095 Jul 27 09:20 start_atlas.sh
[2025-07-27 18:11:12] -rw------- 1 boinc boinc 215501704 Jul 27 18:09 HITS.pool.root.1
[2025-07-27 18:11:12] -rw------- 1 boinc boinc   1802240 Jul 27 18:11 result.tar.gz
18:11:14 (1214123): run_atlas exited; CPU time 59208.191108
18:11:14 (1214123): called boinc_finish(0)

</stderr_txt>
]]>

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