Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:13:25 (932286): wrapper (7.7.26015): starting
23:13:25 (932286): wrapper: running run_atlas (--nthreads 4)
[2025-07-26 23:13:25] Arguments: --nthreads 4
[2025-07-26 23:13:25] Threads: 4
[2025-07-26 23:13:25] Checking for CVMFS
[2025-07-26 23:13:25] No cvmfs_config command found, will try listing directly
[2025-07-26 23:13:25] CVMFS is ok
[2025-07-26 23:13:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 23:13:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 23:13:25] Further information can be found at the LHC@home message board.
[2025-07-26 23:13:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 23:13:25] Checking for apptainer binary...
[2025-07-26 23:13:25] which: no apptainer in ((null))
[2025-07-26 23:13:25] apptainer is not installed, using version from CVMFS
[2025-07-26 23:13:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 23:13:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-07-26 23:13:25] apptainer works
[2025-07-26 23:13:25] Set ATHENA_PROC_NUMBER=4
[2025-07-26 23:13:25] Set ATHENA_CORE_NUMBER=4
[2025-07-26 23:13:25] Starting ATLAS job with PandaID=6744844095
[2025-07-26 23:13:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:17:02 (1079059): wrapper (7.7.26015): starting
00:17:02 (1079059): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 00:17:02] Arguments: --nthreads 4
[2025-07-27 00:17:02] Threads: 4
[2025-07-27 00:17:02] This job has been restarted, cleaning up previous attempt
[2025-07-27 00:17:02] Checking for CVMFS
[2025-07-27 00:17:02] No cvmfs_config command found, will try listing directly
[2025-07-27 00:17:02] CVMFS is ok
[2025-07-27 00:17:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 00:17:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 00:17:02] Further information can be found at the LHC@home message board.
[2025-07-27 00:17:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 00:17:02] Checking for apptainer binary...
[2025-07-27 00:17:02] which: no apptainer in ((null))
[2025-07-27 00:17:02] apptainer is not installed, using version from CVMFS
[2025-07-27 00:17:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 00:17:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-07-27 00:17:02] apptainer works
[2025-07-27 00:17:02] Set ATHENA_PROC_NUMBER=4
[2025-07-27 00:17:02] Set ATHENA_CORE_NUMBER=4
[2025-07-27 00:17:02] Starting ATLAS job with PandaID=6744844095
[2025-07-27 00:17:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:04:09]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:04:09] 2025-07-27 02:03:36,179 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:04:09] 2025-07-27 02:03:36,179 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:04:09] 2025-07-27 02:03:36,180 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:04:09] 2025-07-27 02:03:36,184 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:04:09] 2025-07-27 02:03:36,184 | INFO     | sum of square deviations: 3438620752.0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,186 | INFO     | sum of deviations: -60365429687.99999
[2025-07-27 04:04:09] 2025-07-27 02:03:36,186 | INFO     | mean x: 1753575032.0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,186 | INFO     | mean y: 2377055.977578475
[2025-07-27 04:04:09] 2025-07-27 02:03:36,186 | INFO     | -- intersect: 30786612344.286083
[2025-07-27 04:04:09] 2025-07-27 02:03:36,186 | INFO     | intersect: 30786612344.286083
[2025-07-27 04:04:09] 2025-07-27 02:03:36,186 | INFO     | chi2: 2.371928031794309
[2025-07-27 04:04:09] 2025-07-27 02:03:36,187 | INFO     | sum of square deviations: 3212467674.5
[2025-07-27 04:04:09] 2025-07-27 02:03:36,188 | INFO     | sum of deviations: -44868052423.0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,188 | INFO     | mean x: 1753574879.5
[2025-07-27 04:04:09] 2025-07-27 02:03:36,188 | INFO     | mean y: 2387334.0733944955
[2025-07-27 04:04:09] 2025-07-27 02:03:36,188 | INFO     | -- intersect: 24494303702.790745
[2025-07-27 04:04:09] 2025-07-27 02:03:36,189 | INFO     | intersect: 24494303702.790745
[2025-07-27 04:04:09] 2025-07-27 02:03:36,189 | INFO     | chi2: 1.5725202555683229
[2025-07-27 04:04:09] 2025-07-27 02:03:36,189 | INFO     | current chi2=1.5725202555683229 (change=33.70286811026271 %)
[2025-07-27 04:04:09] 2025-07-27 02:03:36,189 | INFO     | sum of square deviations: 2996454322.0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,191 | INFO     | sum of deviations: -43652345907.99992
[2025-07-27 04:04:09] 2025-07-27 02:03:36,191 | INFO     | mean x: 1753574727.0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,191 | INFO     | mean y: 2388192.7276995303
[2025-07-27 04:04:09] 2025-07-27 02:03:36,191 | INFO     | -- intersect: 25548464432.407665
[2025-07-27 04:04:09] 2025-07-27 02:03:36,191 | INFO     | intersect: 25548464432.407665
[2025-07-27 04:04:09] 2025-07-27 02:03:36,191 | INFO     | chi2: 1.5666725201242553
[2025-07-27 04:04:09] 2025-07-27 02:03:36,191 | INFO     | current chi2=1.5666725201242553 (change=0.3718702778778616 %)
[2025-07-27 04:04:09] 2025-07-27 02:03:36,192 | INFO     | right removable region: 212
[2025-07-27 04:04:09] 2025-07-27 02:03:36,192 | INFO     | sum of square deviations: 3212467674.5
[2025-07-27 04:04:09] 2025-07-27 02:03:36,193 | INFO     | sum of deviations: -85967890205.5
[2025-07-27 04:04:09] 2025-07-27 02:03:36,193 | INFO     | mean x: 1753575184.5
[2025-07-27 04:04:09] 2025-07-27 02:03:36,193 | INFO     | mean y: 2394075.362385321
[2025-07-27 04:04:09] 2025-07-27 02:03:36,193 | INFO     | -- intersect: 46929297067.98125
[2025-07-27 04:04:09] 2025-07-27 02:03:36,194 | INFO     | intersect: 46929297067.98125
[2025-07-27 04:04:09] 2025-07-27 02:03:36,194 | INFO     | chi2: 1.0773719807178816
[2025-07-27 04:04:09] 2025-07-27 02:03:36,194 | INFO     | current chi2=1.0773719807178816 (change=54.578217961239126 %)
[2025-07-27 04:04:09] 2025-07-27 02:03:36,194 | INFO     | sum of square deviations: 2996454322.0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,196 | INFO     | sum of deviations: -79430640650.0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,196 | INFO     | mean x: 1753575337.0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,196 | INFO     | mean y: 2389440.384976526
[2025-07-27 04:04:09] 2025-07-27 02:03:36,196 | INFO     | -- intersect: 46486532857.25554
[2025-07-27 04:04:09] 2025-07-27 02:03:36,196 | INFO     | intersect: 46486532857.25554
[2025-07-27 04:04:09] 2025-07-27 02:03:36,196 | INFO     | chi2: 1.0722682696084114
[2025-07-27 04:04:09] 2025-07-27 02:03:36,196 | INFO     | current chi2=1.0722682696084114 (change=0.4737185671071136 %)
[2025-07-27 04:04:09] 2025-07-27 02:03:36,197 | INFO     | left removable region: 20
[2025-07-27 04:04:09] 2025-07-27 02:03:36,197 | INFO     | sum of square deviations: 2194675568.0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,198 | INFO     | sum of deviations: -45474640327.00002
[2025-07-27 04:04:09] 2025-07-27 02:03:36,198 | INFO     | mean x: 1753575306.5
[2025-07-27 04:04:09] 2025-07-27 02:03:36,198 | INFO     | mean y: 2387760.0729166665
[2025-07-27 04:04:09] 2025-07-27 02:03:36,198 | INFO     | -- intersect: 36337237207.57737
[2025-07-27 04:04:09] 2025-07-27 02:03:36,198 | INFO     | intersect: 36337237207.57737
[2025-07-27 04:04:09] 2025-07-27 02:03:36,199 | INFO     | chi2: 0.20616644285556676
[2025-07-27 04:04:09] 2025-07-27 02:03:36,199 | INFO     | -- intersect: 36337237207.57737
[2025-07-27 04:04:09] 2025-07-27 02:03:36,199 | INFO     | current memory leak: -20.72 B/s (using 192 data points, chi2=0.21)
[2025-07-27 04:04:09] 2025-07-27 02:03:36,199 | INFO     | could have reported an average CPU frequency of 2555 MHz (11 samples)
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | ..............................
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | . Timing measurements:
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | . get job = 0 s
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | . initial setup = 1 s
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | . payload setup = 7 s
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | . stage-in = 0 s
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | . payload execution = 13549 s
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | . stage-out = 1 s
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | . log creation = 0 s
[2025-07-27 04:04:09] 2025-07-27 02:03:36,200 | INFO     | ..............................
[2025-07-27 04:04:09] 2025-07-27 02:03:36,546 | INFO     | 
[2025-07-27 04:04:09] 2025-07-27 02:03:36,546 | INFO     | job summary report
[2025-07-27 04:04:09] 2025-07-27 02:03:36,546 | INFO     | --------------------------------------------------
[2025-07-27 04:04:09] 2025-07-27 02:03:36,546 | INFO     | PanDA job id: 6744844095
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | task id: 45743349
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | errors: (none)
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | pilot state: finished 
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | transexitcode: 0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | exeerrorcode: 0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | exeerrordiag: 
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | exitcode: 0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | exitmsg: OK
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | cpuconsumptiontime: 51962 s
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | nevents: 400
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | neventsw: 0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,547 | INFO     | pid: 1089668
[2025-07-27 04:04:09] 2025-07-27 02:03:36,548 | INFO     | pgrp: 1089668
[2025-07-27 04:04:09] 2025-07-27 02:03:36,548 | INFO     | corecount: 4
[2025-07-27 04:04:09] 2025-07-27 02:03:36,548 | INFO     | event service: False
[2025-07-27 04:04:09] 2025-07-27 02:03:36,548 | INFO     | sizes: {0: 2397480, 1: 2397480, 5: 2397770, 11: 2397826, 13560: 2428186, 13561: 2437390, 13567: 2437528}
[2025-07-27 04:04:09] 2025-07-27 02:03:36,548 | INFO     | --------------------------------------------------
[2025-07-27 04:04:09] 2025-07-27 02:03:36,548 | INFO     | 
[2025-07-27 04:04:09] 2025-07-27 02:03:36,548 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/0
[2025-07-27 04:04:09] 2025-07-27 02:03:36,570 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,570 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,570 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,570 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,570 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:04:09] 2025-07-27 02:03:36,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,572 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:04:09] 2025-07-27 02:03:36,572 | INFO     | job 6744844095 has completed (purged errors)
[2025-07-27 04:04:09] 2025-07-27 02:03:36,572 | INFO     | overall cleanup function is called
[2025-07-27 04:04:09] 2025-07-27 02:03:37,580 | INFO     | --- collectZombieJob: --- 10, [1089668]
[2025-07-27 04:04:09] 2025-07-27 02:03:37,580 | INFO     | zombie collector waiting for pid 1089668
[2025-07-27 04:04:09] 2025-07-27 02:03:37,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:04:09] 2025-07-27 02:03:37,580 | INFO     | collected zombie processes
[2025-07-27 04:04:09] 2025-07-27 02:03:37,580 | INFO     | will attempt to kill all subprocesses of pid=1089668
[2025-07-27 04:04:09] 2025-07-27 02:03:37,910 | INFO     | process IDs to be killed: [1089668] (in reverse order)
[2025-07-27 04:04:09] 2025-07-27 02:03:38,019 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:04:09] 2025-07-27 02:03:38,020 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:04:09] 2025-07-27 02:03:38,030 | INFO     | did not find any defunct processes belonging to 1089668
[2025-07-27 04:04:09] 2025-07-27 02:03:38,039 | INFO     | did not find any defunct processes belonging to 1089668
[2025-07-27 04:04:09] 2025-07-27 02:03:38,040 | INFO     | ready for new job
[2025-07-27 04:04:09] 2025-07-27 02:03:38,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:04:09] 2025-07-27 02:03:38,042 | INFO     | ***************************************
[2025-07-27 04:04:09] 2025-07-27 02:03:38,042 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:04:09] 2025-07-27 02:03:38,042 | INFO     | ***************************************
[2025-07-27 04:04:09] 2025-07-27 02:03:38,042 | INFO     | 
[2025-07-27 04:04:09] 2025-07-27 02:03:38,046 | INFO     | architecture information:
[2025-07-27 04:04:09] 2025-07-27 02:03:38,046 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:04:09] 2025-07-27 02:03:38,062 | INFO     | cat /etc/os-release:
[2025-07-27 04:04:09] NAME="CentOS Linux"
[2025-07-27 04:04:09] VERSION="7 (Core)"
[2025-07-27 04:04:09] ID="centos"
[2025-07-27 04:04:09] ID_LIKE="rhel fedora"
[2025-07-27 04:04:09] VERSION_ID="7"
[2025-07-27 04:04:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:04:09] ANSI_COLOR="0;31"
[2025-07-27 04:04:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:04:09] HOME_URL="https://www.centos.org/"
[2025-07-27 04:04:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:04:09] 
[2025-07-27 04:04:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:04:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:04:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:04:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:04:09] 
[2025-07-27 04:04:09] 2025-07-27 02:03:38,063 | INFO     | ***************************************
[2025-07-27 04:04:09] 2025-07-27 02:03:38,565 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/0
[2025-07-27 04:04:09] 2025-07-27 02:03:38,584 | INFO     | sufficient remaining disk space (669765337088 B)
[2025-07-27 04:04:09] 2025-07-27 02:03:38,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:04:09] 2025-07-27 02:03:38,584 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:04:09] 2025-07-27 02:03:38,584 | INFO     | update_server=False
[2025-07-27 04:04:09] 2025-07-27 02:03:38,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:04:09] 2025-07-27 02:03:38,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:04:09] 2025-07-27 02:03:38,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:04:09] 2025-07-27 02:03:38,585 | INFO     | aborting loop
[2025-07-27 04:04:09] 2025-07-27 02:03:39,143 | INFO     | all payload control threads have been joined
[2025-07-27 04:04:09] 2025-07-27 02:03:39,412 | INFO     | all data control threads have been joined
[2025-07-27 04:04:09] 2025-07-27 02:03:39,589 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:39,590 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:39,718 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:39,977 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:39,996 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:40,146 | INFO     | [payload] control thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:40,197 | INFO     | all job control threads have been joined
[2025-07-27 04:04:09] 2025-07-27 02:03:40,416 | INFO     | [data] control thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:40,590 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:40,602 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:40,682 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:04:09] 2025-07-27 02:03:40,752 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:40,785 | INFO     | [job] validate thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:41,055 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:41,202 | INFO     | [job] control thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:41,308 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:04:09] 2025-07-27 02:03:42,311 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:44,687 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:49,559 | INFO     | job.realtimelogging is not enabled
[2025-07-27 04:04:09] 2025-07-27 02:03:50,564 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:04:09] 2025-07-27 02:03:51,167 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22943288182592)>', '<ExcThread(monitor, started 22943052560128)>']
[2025-07-27 04:04:09] 2025-07-27 02:03:56,192 | INFO     | all workflow threads have been joined
[2025-07-27 04:04:09] 2025-07-27 02:03:56,193 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:04:09] 2025-07-27 02:03:56,193 | INFO     | traces error code: 0
[2025-07-27 04:04:09] 2025-07-27 02:03:56,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:04:09] 2025-07-27 02:04:09,343 | INFO     | PID=1082734 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 04:04:09] 2025-07-27 02:04:09,343 | INFO     | .. there are 13 such processes running
[2025-07-27 04:04:09] 2025-07-27 02:04:09,344 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:04:09] 2025-07-27 02:04:09,344 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:04:09] 2025-07-27 02:04:09,344 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:04:09] 2025-07-27 02:04:09,344 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:04:09] 2025-07-27 02:04:09,344 | INFO     | [monitor] control thread has ended
[2025-07-27 04:04:09] 2025-07-27 02:04:09,527 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:04:09] 2025-07-27 02:04:09,531 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:04:09] 2025-07-27 02:04:09,533 [wrapper] pilotpid: 1082734
[2025-07-27 04:04:09] 2025-07-27 02:04:09,535 [wrapper] Pilot exit status: 0
[2025-07-27 04:04:09] 2025-07-27 02:04:09,546 [wrapper] pandaids: 6744844095 6744844095
[2025-07-27 04:04:09] 2025-07-27 02:04:09,607 [wrapper] cleanup supervisor_pilot 1616661 1082735
[2025-07-27 04:04:09] 2025-07-27 02:04:09,610 [wrapper] Test setup, not cleaning
[2025-07-27 04:04:09] 2025-07-27 02:04:09,613 [wrapper] apfmon messages muted
[2025-07-27 04:04:09] 2025-07-27 02:04:09,616 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:04:09] 2025-07-27 02:04:09,619 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:04:09]  *** Error codes and diagnostics ***
[2025-07-27 04:04:09]     "exeErrorCode": 0,
[2025-07-27 04:04:09]     "exeErrorDiag": "",
[2025-07-27 04:04:09]     "pilotErrorCode": 0,
[2025-07-27 04:04:09]     "pilotErrorDiag": "",
[2025-07-27 04:04:09]  *** Listing of results directory ***
[2025-07-27 04:04:09] total 511740
[2025-07-27 04:04:09] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc    530466 Jul 24 19:03 pilot3.tar.gz
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc      5112 Jul 24 19:21 queuedata.json
[2025-07-27 04:04:09] -rwx------ 1 boinc boinc     36292 Jul 24 19:21 runpilot2-wrapper.sh
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc       100 Jul 26 23:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:04:09] -rwxr-xr-x 1 boinc boinc      7986 Jul 26 23:13 run_atlas
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc       105 Jul 26 23:13 job.xml
[2025-07-27 04:04:09] -rw-r--r-- 3 boinc boinc 149581243 Jul 26 23:13 EVNT.45743347._000201.pool.root.1
[2025-07-27 04:04:09] -rw-r--r-- 3 boinc boinc 149581243 Jul 26 23:13 ATLAS.root_0
[2025-07-27 04:04:09] -rw-r--r-- 2 boinc boinc     15095 Jul 26 23:13 start_atlas.sh
[2025-07-27 04:04:09] drwxrwx--x 2 boinc boinc      4096 Jul 26 23:13 shared
[2025-07-27 04:04:09] -rw-r--r-- 2 boinc boinc    542880 Jul 26 23:13 input.tar.gz
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc         0 Jul 26 23:13 boinc_lockfile
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc      6641 Jul 27 00:17 init_data.xml
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc      2560 Jul 27 00:17 pandaJob.out
[2025-07-27 04:04:09] -rw------- 1 boinc boinc    980125 Jul 27 00:17 agis_schedconf.cvmfs.json
[2025-07-27 04:04:09] -rw------- 1 boinc boinc 217772521 Jul 27 04:02 HITS.45743349._003565.pool.root.1
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc       530 Jul 27 04:02 boinc_task_state.xml
[2025-07-27 04:04:09] -rw------- 1 boinc boinc        96 Jul 27 04:03 pilot_heartbeat.json
[2025-07-27 04:04:09] -rw------- 1 boinc boinc      1034 Jul 27 04:03 memory_monitor_summary.json
[2025-07-27 04:04:09] -rw------- 1 boinc boinc   1593052 Jul 27 04:03 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:04:09] -rw------- 1 boinc boinc    331900 Jul 27 04:03 log.45743349._003565.job.log.tgz.1
[2025-07-27 04:04:09] -rw------- 1 boinc boinc      7844 Jul 27 04:03 heartbeat.json
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc      8192 Jul 27 04:03 boinc_mmap_file
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc        28 Jul 27 04:03 wrapper_checkpoint.txt
[2025-07-27 04:04:09] -rw------- 1 boinc boinc       823 Jul 27 04:04 pilotlog.txt
[2025-07-27 04:04:09] -rw------- 1 boinc boinc   1270977 Jul 27 04:04 log.45743349._003565.job.log.1
[2025-07-27 04:04:09] -rw------- 1 boinc boinc       357 Jul 27 04:04 output.list
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc       620 Jul 27 04:04 runtime_log
[2025-07-27 04:04:09] -rw------- 1 boinc boinc   1617920 Jul 27 04:04 result.tar.gz
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc      9104 Jul 27 04:04 runtime_log.err
[2025-07-27 04:04:09] -rw------- 1 boinc boinc       790 Jul 27 04:04 BvSNDmmoEz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmamMLDmdcDN4n.diag
[2025-07-27 04:04:09] -rw-r--r-- 1 boinc boinc     22573 Jul 27 04:04 stderr.txt
[2025-07-27 04:04:09] HITS file was successfully produced:
[2025-07-27 04:04:09] -rw------- 1 boinc boinc 217772521 Jul 27 04:02 shared/HITS.pool.root.1
[2025-07-27 04:04:09]  *** Contents of shared directory: ***
[2025-07-27 04:04:09] total 360884
[2025-07-27 04:04:09] -rw-r--r-- 3 boinc boinc 149581243 Jul 26 23:13 ATLAS.root_0
[2025-07-27 04:04:09] -rw-r--r-- 2 boinc boinc     15095 Jul 26 23:13 start_atlas.sh
[2025-07-27 04:04:09] -rw-r--r-- 2 boinc boinc    542880 Jul 26 23:13 input.tar.gz
[2025-07-27 04:04:09] -rw------- 1 boinc boinc 217772521 Jul 27 04:02 HITS.pool.root.1
[2025-07-27 04:04:09] -rw------- 1 boinc boinc   1617920 Jul 27 04:04 result.tar.gz
04:04:11 (1079059): run_atlas exited; CPU time 52447.473597
04:04:11 (1079059): called boinc_finish(0)

</stderr_txt>
]]>

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