Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:42:38 (3769047): wrapper (7.7.26015): starting
16:42:38 (3769047): wrapper: running run_atlas (--nthreads 4)
[2025-07-26 16:42:38] Arguments: --nthreads 4
[2025-07-26 16:42:38] Threads: 4
[2025-07-26 16:42:38] Checking for CVMFS
[2025-07-26 16:42:38] No cvmfs_config command found, will try listing directly
[2025-07-26 16:42:38] CVMFS is ok
[2025-07-26 16:42:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 16:42:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 16:42:38] Further information can be found at the LHC@home message board.
[2025-07-26 16:42:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 16:42:38] Checking for apptainer binary...
[2025-07-26 16:42:38] which: no apptainer in ((null))
[2025-07-26 16:42:38] apptainer is not installed, using version from CVMFS
[2025-07-26 16:42:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 16:42:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot16/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment ugluk10.grid.cesnet.cz
[2025-07-26 16:42:38] apptainer works
[2025-07-26 16:42:38] Set ATHENA_PROC_NUMBER=4
[2025-07-26 16:42:38] Set ATHENA_CORE_NUMBER=4
[2025-07-26 16:42:38] Starting ATLAS job with PandaID=6744843886
[2025-07-26 16:42:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot16/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:59:31 (3903911): wrapper (7.7.26015): starting
18:59:31 (3903911): wrapper: running run_atlas (--nthreads 4)
[2025-07-26 18:59:32] Arguments: --nthreads 4
[2025-07-26 18:59:32] Threads: 4
[2025-07-26 18:59:32] This job has been restarted, cleaning up previous attempt
[2025-07-26 18:59:32] Checking for CVMFS
[2025-07-26 18:59:32] No cvmfs_config command found, will try listing directly
[2025-07-26 18:59:32] CVMFS is ok
[2025-07-26 18:59:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 18:59:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 18:59:32] Further information can be found at the LHC@home message board.
[2025-07-26 18:59:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 18:59:32] Checking for apptainer binary...
[2025-07-26 18:59:32] which: no apptainer in ((null))
[2025-07-26 18:59:32] apptainer is not installed, using version from CVMFS
[2025-07-26 18:59:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 18:59:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot16/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment ugluk10.grid.cesnet.cz
[2025-07-26 18:59:32] apptainer works
[2025-07-26 18:59:32] Set ATHENA_PROC_NUMBER=4
[2025-07-26 18:59:32] Set ATHENA_CORE_NUMBER=4
[2025-07-26 18:59:32] Starting ATLAS job with PandaID=6744843886
[2025-07-26 18:59:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot16/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:20:11]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:20:11] 2025-07-26 21:19:39,520 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:20:11] 2025-07-26 21:19:39,521 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:20:11] 2025-07-26 21:19:39,526 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:20:11] 2025-07-26 21:19:39,526 | INFO     | sum of square deviations: 5202255680.0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,528 | INFO     | sum of deviations: 168194049.5
[2025-07-26 23:20:11] 2025-07-26 21:19:39,529 | INFO     | mean x: 1753556982.5
[2025-07-26 23:20:11] 2025-07-26 21:19:39,529 | INFO     | mean y: 2333730.55859375
[2025-07-26 23:20:11] 2025-07-26 21:19:39,529 | INFO     | -- intersect: -54360493.650639206
[2025-07-26 23:20:11] 2025-07-26 21:19:39,529 | INFO     | intersect: -54360493.650639206
[2025-07-26 23:20:11] 2025-07-26 21:19:39,529 | INFO     | chi2: 2.0561731346289522
[2025-07-26 23:20:11] 2025-07-26 21:19:39,530 | INFO     | sum of square deviations: 4903347750.0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,532 | INFO     | sum of deviations: 14842610706.999998
[2025-07-26 23:20:11] 2025-07-26 21:19:39,532 | INFO     | mean x: 1753556830.0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,532 | INFO     | mean y: 2341098.593625498
[2025-07-26 23:20:11] 2025-07-26 21:19:39,532 | INFO     | -- intersect: -5305738749.565415
[2025-07-26 23:20:11] 2025-07-26 21:19:39,533 | INFO     | intersect: -5305738749.565415
[2025-07-26 23:20:11] 2025-07-26 21:19:39,533 | INFO     | chi2: 1.397608727845158
[2025-07-26 23:20:11] 2025-07-26 21:19:39,533 | INFO     | current chi2=1.397608727845158 (change=32.02864562777374 %)
[2025-07-26 23:20:11] 2025-07-26 21:19:39,534 | INFO     | sum of square deviations: 4616114457.5
[2025-07-26 23:20:11] 2025-07-26 21:19:39,535 | INFO     | sum of deviations: 14407325961.499994
[2025-07-26 23:20:11] 2025-07-26 21:19:39,536 | INFO     | mean x: 1753556677.5
[2025-07-26 23:20:11] 2025-07-26 21:19:39,536 | INFO     | mean y: 2340867.6707317075
[2025-07-26 23:20:11] 2025-07-26 21:19:39,536 | INFO     | -- intersect: -5470673910.734473
[2025-07-26 23:20:11] 2025-07-26 21:19:39,536 | INFO     | intersect: -5470673910.734473
[2025-07-26 23:20:11] 2025-07-26 21:19:39,536 | INFO     | chi2: 1.3980350790665932
[2025-07-26 23:20:11] 2025-07-26 21:19:39,537 | INFO     | current chi2=1.3980350790665932 (change=-0.03050576409124426 %)
[2025-07-26 23:20:11] 2025-07-26 21:19:39,537 | INFO     | right removable region: 245
[2025-07-26 23:20:11] 2025-07-26 21:19:39,537 | INFO     | sum of square deviations: 4903347750.0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,539 | INFO     | sum of deviations: -26122437236.000008
[2025-07-26 23:20:11] 2025-07-26 21:19:39,539 | INFO     | mean x: 1753557135.0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,539 | INFO     | mean y: 2346953.537848606
[2025-07-26 23:20:11] 2025-07-26 21:19:39,540 | INFO     | -- intersect: 9344369696.831448
[2025-07-26 23:20:11] 2025-07-26 21:19:39,540 | INFO     | intersect: 9344369696.831448
[2025-07-26 23:20:11] 2025-07-26 21:19:39,540 | INFO     | chi2: 0.824943709817976
[2025-07-26 23:20:11] 2025-07-26 21:19:39,540 | INFO     | current chi2=0.824943709817976 (change=59.87965721734606 %)
[2025-07-26 23:20:11] 2025-07-26 21:19:39,541 | INFO     | sum of square deviations: 4616114457.5
[2025-07-26 23:20:11] 2025-07-26 21:19:39,543 | INFO     | sum of deviations: -13539073555.499998
[2025-07-26 23:20:11] 2025-07-26 21:19:39,543 | INFO     | mean x: 1753557287.5
[2025-07-26 23:20:11] 2025-07-26 21:19:39,543 | INFO     | mean y: 2340261.2317073173
[2025-07-26 23:20:11] 2025-07-26 21:19:39,543 | INFO     | -- intersect: 5145527527.888766
[2025-07-26 23:20:11] 2025-07-26 21:19:39,543 | INFO     | intersect: 5145527527.888766
[2025-07-26 23:20:11] 2025-07-26 21:19:39,544 | INFO     | chi2: 0.7366487221730214
[2025-07-26 23:20:11] 2025-07-26 21:19:39,544 | INFO     | current chi2=0.7366487221730214 (change=10.703153026578867 %)
[2025-07-26 23:20:11] 2025-07-26 21:19:39,544 | INFO     | left removable region: 20
[2025-07-26 23:20:11] 2025-07-26 21:19:39,544 | INFO     | sum of square deviations: 3531973200.0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,546 | INFO     | sum of deviations: 8676386544.999998
[2025-07-26 23:20:11] 2025-07-26 21:19:39,546 | INFO     | mean x: 1753557257.0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,546 | INFO     | mean y: 2343111.56
[2025-07-26 23:20:11] 2025-07-26 21:19:39,546 | INFO     | -- intersect: -4305317147.731295
[2025-07-26 23:20:11] 2025-07-26 21:19:39,546 | INFO     | intersect: -4305317147.731295
[2025-07-26 23:20:11] 2025-07-26 21:19:39,547 | INFO     | chi2: 0.001395297821277336
[2025-07-26 23:20:11] 2025-07-26 21:19:39,547 | INFO     | -- intersect: -4305317147.731295
[2025-07-26 23:20:11] 2025-07-26 21:19:39,547 | INFO     | current memory leak: 2.46 B/s (using 225 data points, chi2=0.00)
[2025-07-26 23:20:11] 2025-07-26 21:19:39,548 | INFO     | could have reported an average CPU frequency of 2604 MHz (12 samples)
[2025-07-26 23:20:11] 2025-07-26 21:19:39,548 | INFO     | ..............................
[2025-07-26 23:20:11] 2025-07-26 21:19:39,548 | INFO     | . Timing measurements:
[2025-07-26 23:20:11] 2025-07-26 21:19:39,548 | INFO     | . get job = 0 s
[2025-07-26 23:20:11] 2025-07-26 21:19:39,548 | INFO     | . initial setup = 1 s
[2025-07-26 23:20:11] 2025-07-26 21:19:39,548 | INFO     | . payload setup = 6 s
[2025-07-26 23:20:11] 2025-07-26 21:19:39,548 | INFO     | . stage-in = 0 s
[2025-07-26 23:20:11] 2025-07-26 21:19:39,548 | INFO     | . payload execution = 15562 s
[2025-07-26 23:20:11] 2025-07-26 21:19:39,549 | INFO     | . stage-out = 1 s
[2025-07-26 23:20:11] 2025-07-26 21:19:39,549 | INFO     | . log creation = 0 s
[2025-07-26 23:20:11] 2025-07-26 21:19:39,549 | INFO     | ..............................
[2025-07-26 23:20:11] 2025-07-26 21:19:39,825 | INFO     | 
[2025-07-26 23:20:11] 2025-07-26 21:19:39,825 | INFO     | job summary report
[2025-07-26 23:20:11] 2025-07-26 21:19:39,825 | INFO     | --------------------------------------------------
[2025-07-26 23:20:11] 2025-07-26 21:19:39,826 | INFO     | PanDA job id: 6744843886
[2025-07-26 23:20:11] 2025-07-26 21:19:39,826 | INFO     | task id: 45743349
[2025-07-26 23:20:11] 2025-07-26 21:19:39,826 | INFO     | errors: (none)
[2025-07-26 23:20:11] 2025-07-26 21:19:39,826 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:20:11] 2025-07-26 21:19:39,826 | INFO     | pilot state: finished 
[2025-07-26 23:20:11] 2025-07-26 21:19:39,826 | INFO     | transexitcode: 0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,826 | INFO     | exeerrorcode: 0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,826 | INFO     | exeerrordiag: 
[2025-07-26 23:20:11] 2025-07-26 21:19:39,826 | INFO     | exitcode: 0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,827 | INFO     | exitmsg: OK
[2025-07-26 23:20:11] 2025-07-26 21:19:39,827 | INFO     | cpuconsumptiontime: 58084 s
[2025-07-26 23:20:11] 2025-07-26 21:19:39,827 | INFO     | nevents: 400
[2025-07-26 23:20:11] 2025-07-26 21:19:39,827 | INFO     | neventsw: 0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,827 | INFO     | pid: 3914224
[2025-07-26 23:20:11] 2025-07-26 21:19:39,827 | INFO     | pgrp: 3914224
[2025-07-26 23:20:11] 2025-07-26 21:19:39,827 | INFO     | corecount: 4
[2025-07-26 23:20:11] 2025-07-26 21:19:39,827 | INFO     | event service: False
[2025-07-26 23:20:11] 2025-07-26 21:19:39,827 | INFO     | sizes: {0: 2397309, 1: 2397508, 4: 2397770, 12: 2397798, 15572: 2429051, 15575: 2438071, 15578: 2438255, 15584: 2438449}
[2025-07-26 23:20:11] 2025-07-26 21:19:39,828 | INFO     | --------------------------------------------------
[2025-07-26 23:20:11] 2025-07-26 21:19:39,828 | INFO     | 
[2025-07-26 23:20:11] 2025-07-26 21:19:39,828 | INFO     | executing command: ls -lF /scratch/boinc/var/slot16/slots/0
[2025-07-26 23:20:11] 2025-07-26 21:19:39,846 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,847 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,847 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,847 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,848 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,848 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,848 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,848 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,848 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,849 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,849 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,849 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,849 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:20:11] 2025-07-26 21:19:39,849 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,849 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:20:11] 2025-07-26 21:19:39,849 | INFO     | job 6744843886 has completed (purged errors)
[2025-07-26 23:20:11] 2025-07-26 21:19:39,850 | INFO     | overall cleanup function is called
[2025-07-26 23:20:11] 2025-07-26 21:19:40,858 | INFO     | --- collectZombieJob: --- 10, [3914224]
[2025-07-26 23:20:11] 2025-07-26 21:19:40,858 | INFO     | zombie collector waiting for pid 3914224
[2025-07-26 23:20:11] 2025-07-26 21:19:40,858 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:20:11] 2025-07-26 21:19:40,858 | INFO     | collected zombie processes
[2025-07-26 23:20:11] 2025-07-26 21:19:40,858 | INFO     | will attempt to kill all subprocesses of pid=3914224
[2025-07-26 23:20:11] 2025-07-26 21:19:41,103 | INFO     | process IDs to be killed: [3914224] (in reverse order)
[2025-07-26 23:20:11] 2025-07-26 21:19:41,180 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:20:11] 2025-07-26 21:19:41,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:20:11] 2025-07-26 21:19:41,186 | INFO     | did not find any defunct processes belonging to 3914224
[2025-07-26 23:20:11] 2025-07-26 21:19:41,191 | INFO     | did not find any defunct processes belonging to 3914224
[2025-07-26 23:20:11] 2025-07-26 21:19:41,192 | INFO     | ready for new job
[2025-07-26 23:20:11] 2025-07-26 21:19:41,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:20:11] 2025-07-26 21:19:41,194 | INFO     | ***************************************
[2025-07-26 23:20:11] 2025-07-26 21:19:41,194 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:20:11] 2025-07-26 21:19:41,194 | INFO     | ***************************************
[2025-07-26 23:20:11] 2025-07-26 21:19:41,194 | INFO     | 
[2025-07-26 23:20:11] 2025-07-26 21:19:41,196 | INFO     | architecture information:
[2025-07-26 23:20:11] 2025-07-26 21:19:41,197 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:20:11] 2025-07-26 21:19:41,209 | INFO     | cat /etc/os-release:
[2025-07-26 23:20:11] NAME="CentOS Linux"
[2025-07-26 23:20:11] VERSION="7 (Core)"
[2025-07-26 23:20:11] ID="centos"
[2025-07-26 23:20:11] ID_LIKE="rhel fedora"
[2025-07-26 23:20:11] VERSION_ID="7"
[2025-07-26 23:20:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:20:11] ANSI_COLOR="0;31"
[2025-07-26 23:20:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:20:11] HOME_URL="https://www.centos.org/"
[2025-07-26 23:20:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:20:11] 
[2025-07-26 23:20:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:20:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:20:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:20:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:20:11] 
[2025-07-26 23:20:11] 2025-07-26 21:19:41,210 | INFO     | ***************************************
[2025-07-26 23:20:11] 2025-07-26 21:19:41,713 | INFO     | executing command: df -mP /scratch/boinc/var/slot16/slots/0
[2025-07-26 23:20:11] 2025-07-26 21:19:41,727 | INFO     | sufficient remaining disk space (3440263561216 B)
[2025-07-26 23:20:11] 2025-07-26 21:19:41,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:20:11] 2025-07-26 21:19:41,727 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:20:11] 2025-07-26 21:19:41,727 | INFO     | update_server=False
[2025-07-26 23:20:11] 2025-07-26 21:19:41,727 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:20:11] 2025-07-26 21:19:41,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:20:11] 2025-07-26 21:19:41,887 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 23:20:11] 2025-07-26 21:19:41,887 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 23:20:11] 2025-07-26 21:19:41,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:20:11] 2025-07-26 21:19:41,888 | INFO     | will abort loop
[2025-07-26 23:20:11] 2025-07-26 21:19:42,047 | INFO     | all data control threads have been joined
[2025-07-26 23:20:11] 2025-07-26 21:19:42,419 | INFO     | all job control threads have been joined
[2025-07-26 23:20:11] 2025-07-26 21:19:42,420 | INFO     | all payload control threads have been joined
[2025-07-26 23:20:11] 2025-07-26 21:19:42,732 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:42,880 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:42,892 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:42,935 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:42,956 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:43,053 | INFO     | [data] control thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:43,255 | INFO     | [job] validate thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:43,350 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:20:11] 2025-07-26 21:19:43,404 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:43,424 | INFO     | [job] control thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:43,424 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:43,425 | INFO     | [payload] control thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:43,437 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:43,733 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:44,051 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:44,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:20:11] 2025-07-26 21:19:45,670 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:47,356 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:20:11] 2025-07-26 21:19:48,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22840398530368)>', '<ExcThread(monitor, started 22839813961472)>']
[2025-07-26 23:20:11] 2025-07-26 21:19:53,770 | INFO     | all workflow threads have been joined
[2025-07-26 23:20:11] 2025-07-26 21:19:53,770 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:20:11] 2025-07-26 21:19:53,771 | INFO     | traces error code: 0
[2025-07-26 23:20:11] 2025-07-26 21:19:53,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:20:11] 2025-07-26 21:20:11,681 | INFO     | PID=3907470 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 23:20:11] 2025-07-26 21:20:11,681 | INFO     | .. there are 6 such processes running
[2025-07-26 23:20:11] 2025-07-26 21:20:11,683 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:20:11] 2025-07-26 21:20:11,683 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:20:11] 2025-07-26 21:20:11,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:20:11] 2025-07-26 21:20:11,683 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:20:11] 2025-07-26 21:20:11,683 | INFO     | [monitor] control thread has ended
[2025-07-26 23:20:11] 2025-07-26 21:20:11,816 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:20:11] 2025-07-26 21:20:11,818 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:20:11] 2025-07-26 21:20:11,822 [wrapper] pilotpid: 3907470
[2025-07-26 23:20:11] 2025-07-26 21:20:11,825 [wrapper] Pilot exit status: 0
[2025-07-26 23:20:11] 2025-07-26 21:20:11,834 [wrapper] pandaids: 6744843886 6744843886
[2025-07-26 23:20:11] 2025-07-26 21:20:11,877 [wrapper] cleanup supervisor_pilot   54052 3907471
[2025-07-26 23:20:11] 2025-07-26 21:20:11,880 [wrapper] Test setup, not cleaning
[2025-07-26 23:20:11] 2025-07-26 21:20:11,882 [wrapper] apfmon messages muted
[2025-07-26 23:20:11] 2025-07-26 21:20:11,885 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:20:11] 2025-07-26 21:20:11,887 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:20:11]  *** Error codes and diagnostics ***
[2025-07-26 23:20:11]     "exeErrorCode": 0,
[2025-07-26 23:20:11]     "exeErrorDiag": "",
[2025-07-26 23:20:11]     "pilotErrorCode": 0,
[2025-07-26 23:20:11]     "pilotErrorDiag": "",
[2025-07-26 23:20:11]  *** Listing of results directory ***
[2025-07-26 23:20:11] total 576000
[2025-07-26 23:20:11] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc    530466 Jul 24 19:03 pilot3.tar.gz
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc      5112 Jul 24 19:21 queuedata.json
[2025-07-26 23:20:11] -rwx------ 1 boinc boinc     36292 Jul 24 19:21 runpilot2-wrapper.sh
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc       100 Jul 26 16:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:20:11] -rwxr-xr-x 1 boinc boinc      7986 Jul 26 16:42 run_atlas
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc       105 Jul 26 16:42 job.xml
[2025-07-26 23:20:11] -rw-r--r-- 3 boinc boinc 186754792 Jul 26 16:42 EVNT.45743347._000191.pool.root.1
[2025-07-26 23:20:11] -rw-r--r-- 3 boinc boinc 186754792 Jul 26 16:42 ATLAS.root_0
[2025-07-26 23:20:11] -rw-r--r-- 2 boinc boinc     15095 Jul 26 16:42 start_atlas.sh
[2025-07-26 23:20:11] drwxrwx--x 2 boinc boinc      4096 Jul 26 16:42 shared
[2025-07-26 23:20:11] -rw-r--r-- 2 boinc boinc    542882 Jul 26 16:42 input.tar.gz
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc         0 Jul 26 16:42 boinc_lockfile
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc      2560 Jul 26 18:59 pandaJob.out
[2025-07-26 23:20:11] -rw------- 1 boinc boinc    980117 Jul 26 18:59 agis_schedconf.cvmfs.json
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc      6424 Jul 26 22:43 init_data.xml
[2025-07-26 23:20:11] -rw------- 1 boinc boinc 208798211 Jul 26 23:18 HITS.45743349._003415.pool.root.1
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc       531 Jul 26 23:18 boinc_task_state.xml
[2025-07-26 23:20:11] -rw------- 1 boinc boinc      1035 Jul 26 23:19 memory_monitor_summary.json
[2025-07-26 23:20:11] -rw------- 1 boinc boinc   1593052 Jul 26 23:19 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:20:11] -rw------- 1 boinc boinc    360010 Jul 26 23:19 log.45743349._003415.job.log.tgz.1
[2025-07-26 23:20:11] -rw------- 1 boinc boinc      7826 Jul 26 23:19 heartbeat.json
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc      8192 Jul 26 23:20 boinc_mmap_file
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc        28 Jul 26 23:20 wrapper_checkpoint.txt
[2025-07-26 23:20:11] -rw------- 1 boinc boinc        97 Jul 26 23:20 pilot_heartbeat.json
[2025-07-26 23:20:11] -rw------- 1 boinc boinc       822 Jul 26 23:20 pilotlog.txt
[2025-07-26 23:20:11] -rw------- 1 boinc boinc   1457938 Jul 26 23:20 log.45743349._003415.job.log.1
[2025-07-26 23:20:11] -rw------- 1 boinc boinc       357 Jul 26 23:20 output.list
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc       620 Jul 26 23:20 runtime_log
[2025-07-26 23:20:11] -rw------- 1 boinc boinc   1832960 Jul 26 23:20 result.tar.gz
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc      9099 Jul 26 23:20 runtime_log.err
[2025-07-26 23:20:11] -rw------- 1 boinc boinc       790 Jul 26 23:20 LgoKDmmoEz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBlMLDmGadojn.diag
[2025-07-26 23:20:11] -rw-r--r-- 1 boinc boinc     22625 Jul 26 23:20 stderr.txt
[2025-07-26 23:20:11] HITS file was successfully produced:
[2025-07-26 23:20:11] -rw------- 1 boinc boinc 208798211 Jul 26 23:18 shared/HITS.pool.root.1
[2025-07-26 23:20:11]  *** Contents of shared directory: ***
[2025-07-26 23:20:11] total 388636
[2025-07-26 23:20:11] -rw-r--r-- 3 boinc boinc 186754792 Jul 26 16:42 ATLAS.root_0
[2025-07-26 23:20:11] -rw-r--r-- 2 boinc boinc     15095 Jul 26 16:42 start_atlas.sh
[2025-07-26 23:20:11] -rw-r--r-- 2 boinc boinc    542882 Jul 26 16:42 input.tar.gz
[2025-07-26 23:20:11] -rw------- 1 boinc boinc 208798211 Jul 26 23:18 HITS.pool.root.1
[2025-07-26 23:20:11] -rw------- 1 boinc boinc   1832960 Jul 26 23:20 result.tar.gz
23:20:12 (3903911): run_atlas exited; CPU time 58542.512259
23:20:12 (3903911): called boinc_finish(0)

</stderr_txt>
]]>

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