Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:08:31 (3794892): wrapper (7.7.26015): starting
15:08:31 (3794892): wrapper: running run_atlas (--nthreads 4)
[2025-07-26 15:08:31] Arguments: --nthreads 4
[2025-07-26 15:08:31] Threads: 4
[2025-07-26 15:08:31] Checking for CVMFS
[2025-07-26 15:08:31] No cvmfs_config command found, will try listing directly
[2025-07-26 15:08:31] CVMFS is ok
[2025-07-26 15:08:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 15:08:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 15:08:31] Further information can be found at the LHC@home message board.
[2025-07-26 15:08:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 15:08:31] Checking for apptainer binary...
[2025-07-26 15:08:31] which: no apptainer in ((null))
[2025-07-26 15:08:31] apptainer is not installed, using version from CVMFS
[2025-07-26 15:08:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 15:08:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-07-26 15:08:31] apptainer works
[2025-07-26 15:08:31] Set ATHENA_PROC_NUMBER=4
[2025-07-26 15:08:31] Set ATHENA_CORE_NUMBER=4
[2025-07-26 15:08:31] Starting ATLAS job with PandaID=6744842820
[2025-07-26 15:08:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:44:29 (80617): wrapper (7.7.26015): starting
18:44:29 (80617): wrapper: running run_atlas (--nthreads 4)
[2025-07-26 18:44:29] Arguments: --nthreads 4
[2025-07-26 18:44:29] Threads: 4
[2025-07-26 18:44:29] This job has been restarted, cleaning up previous attempt
[2025-07-26 18:44:29] Checking for CVMFS
[2025-07-26 18:44:29] No cvmfs_config command found, will try listing directly
[2025-07-26 18:44:29] CVMFS is ok
[2025-07-26 18:44:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 18:44:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 18:44:29] Further information can be found at the LHC@home message board.
[2025-07-26 18:44:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 18:44:29] Checking for apptainer binary...
[2025-07-26 18:44:29] which: no apptainer in ((null))
[2025-07-26 18:44:29] apptainer is not installed, using version from CVMFS
[2025-07-26 18:44:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 18:44:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-07-26 18:44:29] apptainer works
[2025-07-26 18:44:29] Set ATHENA_PROC_NUMBER=4
[2025-07-26 18:44:29] Set ATHENA_CORE_NUMBER=4
[2025-07-26 18:44:29] Starting ATLAS job with PandaID=6744842820
[2025-07-26 18:44:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 22:18:32]  *** The last 200 lines of the pilot log: ***
[2025-07-26 22:18:32] 2025-07-26 20:17:58,975 | INFO     | fitting pss+swap vs Time
[2025-07-26 22:18:32] 2025-07-26 20:17:58,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 22:18:32] 2025-07-26 20:17:58,975 | INFO     | sum of square deviations: 2871616632.5
[2025-07-26 22:18:32] 2025-07-26 20:17:58,977 | INFO     | sum of deviations: -5509664570.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,977 | INFO     | mean x: 1753554682.5
[2025-07-26 22:18:32] 2025-07-26 20:17:58,977 | INFO     | mean y: 2329566.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,977 | INFO     | -- intersect: 3366810045.874031
[2025-07-26 22:18:32] 2025-07-26 20:17:58,977 | INFO     | intersect: 3366810045.874031
[2025-07-26 22:18:32] 2025-07-26 20:17:58,978 | INFO     | chi2: 2.2425198655354444
[2025-07-26 22:18:32] 2025-07-26 20:17:58,978 | INFO     | sum of square deviations: 2671343110.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,979 | INFO     | sum of deviations: 7371313871.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,980 | INFO     | mean x: 1753554530.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,980 | INFO     | mean y: 2339183.7560975607
[2025-07-26 22:18:32] 2025-07-26 20:17:58,980 | INFO     | -- intersect: -4836425549.293819
[2025-07-26 22:18:32] 2025-07-26 20:17:58,980 | INFO     | intersect: -4836425549.293819
[2025-07-26 22:18:32] 2025-07-26 20:17:58,980 | INFO     | chi2: 1.4768329266663802
[2025-07-26 22:18:32] 2025-07-26 20:17:58,980 | INFO     | current chi2=1.4768329266663802 (change=34.14404262975132 %)
[2025-07-26 22:18:32] 2025-07-26 20:17:58,981 | INFO     | sum of square deviations: 2480604650.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,982 | INFO     | sum of deviations: 7086354628.000001
[2025-07-26 22:18:32] 2025-07-26 20:17:58,982 | INFO     | mean x: 1753554377.5
[2025-07-26 22:18:32] 2025-07-26 20:17:58,982 | INFO     | mean y: 2338955.93
[2025-07-26 22:18:32] 2025-07-26 20:17:58,982 | INFO     | -- intersect: -5007047839.521982
[2025-07-26 22:18:32] 2025-07-26 20:17:58,982 | INFO     | intersect: -5007047839.521982
[2025-07-26 22:18:32] 2025-07-26 20:17:58,983 | INFO     | chi2: 1.477258638085021
[2025-07-26 22:18:32] 2025-07-26 20:17:58,983 | INFO     | current chi2=1.477258638085021 (change=-0.028825970152340265 %)
[2025-07-26 22:18:32] 2025-07-26 20:17:58,983 | INFO     | right removable region: 199
[2025-07-26 22:18:32] 2025-07-26 20:17:58,983 | INFO     | sum of square deviations: 2671343110.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,985 | INFO     | sum of deviations: -32493601755.999992
[2025-07-26 22:18:32] 2025-07-26 20:17:58,985 | INFO     | mean x: 1753554835.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,985 | INFO     | mean y: 2349850.3609756096
[2025-07-26 22:18:32] 2025-07-26 20:17:58,985 | INFO     | -- intersect: 21332186610.19161
[2025-07-26 22:18:32] 2025-07-26 20:17:58,985 | INFO     | intersect: 21332186610.19161
[2025-07-26 22:18:32] 2025-07-26 20:17:58,985 | INFO     | chi2: 0.8743406160880358
[2025-07-26 22:18:32] 2025-07-26 20:17:58,986 | INFO     | current chi2=0.8743406160880358 (change=61.01079729435216 %)
[2025-07-26 22:18:32] 2025-07-26 20:17:58,986 | INFO     | sum of square deviations: 2480604650.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,987 | INFO     | sum of deviations: -28359800299.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,987 | INFO     | mean x: 1753554987.5
[2025-07-26 22:18:32] 2025-07-26 20:17:58,987 | INFO     | mean y: 2346537.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,988 | INFO     | -- intersect: 20050067264.611893
[2025-07-26 22:18:32] 2025-07-26 20:17:58,988 | INFO     | intersect: 20050067264.611893
[2025-07-26 22:18:32] 2025-07-26 20:17:58,988 | INFO     | chi2: 0.868794822743968
[2025-07-26 22:18:32] 2025-07-26 20:17:58,988 | INFO     | current chi2=0.868794822743968 (change=0.6342829375673655 %)
[2025-07-26 22:18:32] 2025-07-26 20:17:58,988 | INFO     | left removable region: 20
[2025-07-26 22:18:32] 2025-07-26 20:17:58,989 | INFO     | sum of square deviations: 1778377530.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,990 | INFO     | sum of deviations: -7061762783.000001
[2025-07-26 22:18:32] 2025-07-26 20:17:58,990 | INFO     | mean x: 1753554957.0
[2025-07-26 22:18:32] 2025-07-26 20:17:58,990 | INFO     | mean y: 2349417.100558659
[2025-07-26 22:18:32] 2025-07-26 20:17:58,990 | INFO     | -- intersect: 6965544196.832041
[2025-07-26 22:18:32] 2025-07-26 20:17:58,990 | INFO     | intersect: 6965544196.832041
[2025-07-26 22:18:32] 2025-07-26 20:17:58,990 | INFO     | chi2: 0.05640546105756108
[2025-07-26 22:18:32] 2025-07-26 20:17:58,990 | INFO     | -- intersect: 6965544196.832041
[2025-07-26 22:18:32] 2025-07-26 20:17:58,991 | INFO     | current memory leak: -3.97 B/s (using 179 data points, chi2=0.06)
[2025-07-26 22:18:32] 2025-07-26 20:17:58,991 | INFO     | could have reported an average CPU frequency of 2559 MHz (11 samples)
[2025-07-26 22:18:32] 2025-07-26 20:17:58,991 | INFO     | ..............................
[2025-07-26 22:18:32] 2025-07-26 20:17:58,992 | INFO     | . Timing measurements:
[2025-07-26 22:18:32] 2025-07-26 20:17:58,992 | INFO     | . get job = 0 s
[2025-07-26 22:18:32] 2025-07-26 20:17:58,992 | INFO     | . initial setup = 1 s
[2025-07-26 22:18:32] 2025-07-26 20:17:58,992 | INFO     | . payload setup = 7 s
[2025-07-26 22:18:32] 2025-07-26 20:17:58,992 | INFO     | . stage-in = 0 s
[2025-07-26 22:18:32] 2025-07-26 20:17:58,992 | INFO     | . payload execution = 12763 s
[2025-07-26 22:18:32] 2025-07-26 20:17:58,992 | INFO     | . stage-out = 1 s
[2025-07-26 22:18:32] 2025-07-26 20:17:58,992 | INFO     | . log creation = 0 s
[2025-07-26 22:18:32] 2025-07-26 20:17:58,992 | INFO     | ..............................
[2025-07-26 22:18:32] 2025-07-26 20:17:59,095 | INFO     | 
[2025-07-26 22:18:32] 2025-07-26 20:17:59,096 | INFO     | job summary report
[2025-07-26 22:18:32] 2025-07-26 20:17:59,096 | INFO     | --------------------------------------------------
[2025-07-26 22:18:32] 2025-07-26 20:17:59,096 | INFO     | PanDA job id: 6744842820
[2025-07-26 22:18:32] 2025-07-26 20:17:59,096 | INFO     | task id: 45743349
[2025-07-26 22:18:32] 2025-07-26 20:17:59,096 | INFO     | errors: (none)
[2025-07-26 22:18:32] 2025-07-26 20:17:59,096 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 22:18:32] 2025-07-26 20:17:59,096 | INFO     | pilot state: finished 
[2025-07-26 22:18:32] 2025-07-26 20:17:59,096 | INFO     | transexitcode: 0
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | exeerrorcode: 0
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | exeerrordiag: 
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | exitcode: 0
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | exitmsg: OK
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | cpuconsumptiontime: 49255 s
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | nevents: 400
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | neventsw: 0
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | pid: 91579
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | pgrp: 91579
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | corecount: 4
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | event service: False
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | sizes: {0: 2397366, 1: 2397508, 5: 2397770, 11: 2397826, 12774: 2427760, 12776: 2436780, 12779: 2436964, 12783: 2437158}
[2025-07-26 22:18:32] 2025-07-26 20:17:59,097 | INFO     | --------------------------------------------------
[2025-07-26 22:18:32] 2025-07-26 20:17:59,098 | INFO     | 
[2025-07-26 22:18:32] 2025-07-26 20:17:59,098 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2025-07-26 22:18:32] 2025-07-26 20:17:59,119 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,120 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,120 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,120 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,120 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,120 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,120 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,120 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,120 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,121 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 22:18:32] 2025-07-26 20:17:59,122 | INFO     | job 6744842820 has completed (purged errors)
[2025-07-26 22:18:32] 2025-07-26 20:17:59,122 | INFO     | overall cleanup function is called
[2025-07-26 22:18:32] 2025-07-26 20:18:00,129 | INFO     | --- collectZombieJob: --- 10, [91579]
[2025-07-26 22:18:32] 2025-07-26 20:18:00,129 | INFO     | zombie collector waiting for pid 91579
[2025-07-26 22:18:32] 2025-07-26 20:18:00,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 22:18:32] 2025-07-26 20:18:00,129 | INFO     | collected zombie processes
[2025-07-26 22:18:32] 2025-07-26 20:18:00,129 | INFO     | will attempt to kill all subprocesses of pid=91579
[2025-07-26 22:18:32] 2025-07-26 20:18:00,479 | INFO     | process IDs to be killed: [91579] (in reverse order)
[2025-07-26 22:18:32] 2025-07-26 20:18:00,593 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 22:18:32] 2025-07-26 20:18:00,593 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 22:18:32] 2025-07-26 20:18:00,606 | INFO     | did not find any defunct processes belonging to 91579
[2025-07-26 22:18:32] 2025-07-26 20:18:00,617 | INFO     | did not find any defunct processes belonging to 91579
[2025-07-26 22:18:32] 2025-07-26 20:18:00,618 | INFO     | ready for new job
[2025-07-26 22:18:32] 2025-07-26 20:18:00,618 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 22:18:32] 2025-07-26 20:18:00,620 | INFO     | ***************************************
[2025-07-26 22:18:32] 2025-07-26 20:18:00,620 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 22:18:32] 2025-07-26 20:18:00,620 | INFO     | ***************************************
[2025-07-26 22:18:32] 2025-07-26 20:18:00,620 | INFO     | 
[2025-07-26 22:18:32] 2025-07-26 20:18:00,625 | INFO     | architecture information:
[2025-07-26 22:18:32] 2025-07-26 20:18:00,625 | INFO     | executing command: cat /etc/os-release
[2025-07-26 22:18:32] 2025-07-26 20:18:00,642 | INFO     | cat /etc/os-release:
[2025-07-26 22:18:32] NAME="CentOS Linux"
[2025-07-26 22:18:32] VERSION="7 (Core)"
[2025-07-26 22:18:32] ID="centos"
[2025-07-26 22:18:32] ID_LIKE="rhel fedora"
[2025-07-26 22:18:32] VERSION_ID="7"
[2025-07-26 22:18:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 22:18:32] ANSI_COLOR="0;31"
[2025-07-26 22:18:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 22:18:32] HOME_URL="https://www.centos.org/"
[2025-07-26 22:18:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 22:18:32] 
[2025-07-26 22:18:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 22:18:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 22:18:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 22:18:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 22:18:32] 
[2025-07-26 22:18:32] 2025-07-26 20:18:00,642 | INFO     | ***************************************
[2025-07-26 22:18:32] 2025-07-26 20:18:01,145 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2025-07-26 22:18:32] 2025-07-26 20:18:01,163 | INFO     | sufficient remaining disk space (659882508288 B)
[2025-07-26 22:18:32] 2025-07-26 20:18:01,164 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 22:18:32] 2025-07-26 20:18:01,164 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 22:18:32] 2025-07-26 20:18:01,164 | INFO     | update_server=False
[2025-07-26 22:18:32] 2025-07-26 20:18:01,164 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 22:18:32] 2025-07-26 20:18:01,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 22:18:32] 2025-07-26 20:18:01,404 | INFO     | all job control threads have been joined
[2025-07-26 22:18:32] 2025-07-26 20:18:01,478 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 22:18:32] 2025-07-26 20:18:01,478 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 22:18:32] 2025-07-26 20:18:01,478 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 22:18:32] 2025-07-26 20:18:01,478 | INFO     | will abort loop
[2025-07-26 22:18:32] 2025-07-26 20:18:01,708 | INFO     | all payload control threads have been joined
[2025-07-26 22:18:32] 2025-07-26 20:18:01,991 | INFO     | all data control threads have been joined
[2025-07-26 22:18:32] 2025-07-26 20:18:02,169 | INFO     | [job] retrieve thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,170 | INFO     | [data] copytool_in thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,295 | INFO     | [payload] validate_post thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,405 | INFO     | [job] control thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,484 | INFO     | [job] job monitor thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,517 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 22:18:32] 2025-07-26 20:18:02,713 | INFO     | [payload] control thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,824 | INFO     | [payload] failed_post thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,894 | INFO     | [job] validate thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,904 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,978 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:02,996 | INFO     | [data] control thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:03,568 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:04,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 22:18:32] 2025-07-26 20:18:04,522 | INFO     | [data] copytool_out thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:05,108 | INFO     | [job] queue monitor thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:05,170 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:12,027 | INFO     | job.realtimelogging is not enabled
[2025-07-26 22:18:32] 2025-07-26 20:18:13,032 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 22:18:32] 2025-07-26 20:18:13,261 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22630801041216)>', '<ExcThread(monitor, started 22630566434560)>']
[2025-07-26 22:18:32] 2025-07-26 20:18:18,286 | INFO     | all workflow threads have been joined
[2025-07-26 22:18:32] 2025-07-26 20:18:18,286 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 22:18:32] 2025-07-26 20:18:18,286 | INFO     | traces error code: 0
[2025-07-26 22:18:32] 2025-07-26 20:18:18,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 22:18:32] 2025-07-26 20:18:32,096 | INFO     | PID=84300 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 22:18:32] 2025-07-26 20:18:32,097 | INFO     | .. there are 11 such processes running
[2025-07-26 22:18:32] 2025-07-26 20:18:32,097 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 22:18:32] 2025-07-26 20:18:32,098 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 22:18:32] 2025-07-26 20:18:32,098 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 22:18:32] 2025-07-26 20:18:32,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 22:18:32] 2025-07-26 20:18:32,098 | INFO     | [monitor] control thread has ended
[2025-07-26 22:18:32] 2025-07-26 20:18:32,247 [wrapper] ==== pilot stdout END ====
[2025-07-26 22:18:32] 2025-07-26 20:18:32,250 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 22:18:32] 2025-07-26 20:18:32,253 [wrapper] pilotpid: 84300
[2025-07-26 22:18:32] 2025-07-26 20:18:32,257 [wrapper] Pilot exit status: 0
[2025-07-26 22:18:32] 2025-07-26 20:18:32,267 [wrapper] pandaids: 6744842820 6744842820
[2025-07-26 22:18:32] 2025-07-26 20:18:32,337 [wrapper] cleanup supervisor_pilot  605382 84301
[2025-07-26 22:18:32] 2025-07-26 20:18:32,340 [wrapper] Test setup, not cleaning
[2025-07-26 22:18:32] 2025-07-26 20:18:32,343 [wrapper] apfmon messages muted
[2025-07-26 22:18:32] 2025-07-26 20:18:32,347 [wrapper] ==== wrapper stdout END ====
[2025-07-26 22:18:32] 2025-07-26 20:18:32,350 [wrapper] ==== wrapper stderr END ====
[2025-07-26 22:18:32]  *** Error codes and diagnostics ***
[2025-07-26 22:18:32]     "exeErrorCode": 0,
[2025-07-26 22:18:32]     "exeErrorDiag": "",
[2025-07-26 22:18:32]     "pilotErrorCode": 0,
[2025-07-26 22:18:32]     "pilotErrorDiag": "",
[2025-07-26 22:18:32]  *** Listing of results directory ***
[2025-07-26 22:18:32] total 669116
[2025-07-26 22:18:32] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc    530466 Jul 24 19:03 pilot3.tar.gz
[2025-07-26 22:18:32] -rwx------ 1 boinc boinc     36292 Jul 24 19:20 runpilot2-wrapper.sh
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc      5112 Jul 24 19:20 queuedata.json
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc       100 Jul 26 15:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 22:18:32] -rwxr-xr-x 1 boinc boinc      7986 Jul 26 15:08 run_atlas
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc       105 Jul 26 15:08 job.xml
[2025-07-26 22:18:32] -rw-r--r-- 3 boinc boinc 231962389 Jul 26 15:08 EVNT.45743347._000155.pool.root.1
[2025-07-26 22:18:32] -rw-r--r-- 3 boinc boinc 231962389 Jul 26 15:08 ATLAS.root_0
[2025-07-26 22:18:32] -rw-r--r-- 2 boinc boinc     15095 Jul 26 15:08 start_atlas.sh
[2025-07-26 22:18:32] drwxrwx--x 2 boinc boinc      4096 Jul 26 15:08 shared
[2025-07-26 22:18:32] -rw-r--r-- 2 boinc boinc    542875 Jul 26 15:08 input.tar.gz
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc         0 Jul 26 15:08 boinc_lockfile
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc      2560 Jul 26 18:44 pandaJob.out
[2025-07-26 22:18:32] -rw------- 1 boinc boinc    980117 Jul 26 18:44 agis_schedconf.cvmfs.json
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc      6640 Jul 26 21:10 init_data.xml
[2025-07-26 22:18:32] -rw------- 1 boinc boinc 214334054 Jul 26 22:17 HITS.45743349._002709.pool.root.1
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc       530 Jul 26 22:17 boinc_task_state.xml
[2025-07-26 22:18:32] -rw------- 1 boinc boinc      1037 Jul 26 22:17 memory_monitor_summary.json
[2025-07-26 22:18:32] -rw------- 1 boinc boinc   1593052 Jul 26 22:17 agis_ddmendpoints.agis.ALL.json
[2025-07-26 22:18:32] -rw------- 1 boinc boinc    317562 Jul 26 22:17 log.45743349._002709.job.log.tgz.1
[2025-07-26 22:18:32] -rw------- 1 boinc boinc      7824 Jul 26 22:17 heartbeat.json
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc      8192 Jul 26 22:18 boinc_mmap_file
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc        28 Jul 26 22:18 wrapper_checkpoint.txt
[2025-07-26 22:18:32] -rw------- 1 boinc boinc        97 Jul 26 22:18 pilot_heartbeat.json
[2025-07-26 22:18:32] -rw------- 1 boinc boinc       821 Jul 26 22:18 pilotlog.txt
[2025-07-26 22:18:32] -rw------- 1 boinc boinc   1196600 Jul 26 22:18 log.45743349._002709.job.log.1
[2025-07-26 22:18:32] -rw------- 1 boinc boinc       357 Jul 26 22:18 output.list
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc       620 Jul 26 22:18 runtime_log
[2025-07-26 22:18:32] -rw------- 1 boinc boinc   1536000 Jul 26 22:18 result.tar.gz
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc      9104 Jul 26 22:18 runtime_log.err
[2025-07-26 22:18:32] -rw------- 1 boinc boinc       789 Jul 26 22:18 LlgLDmnnEz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7cMLDms2PyZm.diag
[2025-07-26 22:18:32] -rw-r--r-- 1 boinc boinc     22606 Jul 26 22:18 stderr.txt
[2025-07-26 22:18:32] HITS file was successfully produced:
[2025-07-26 22:18:32] -rw------- 1 boinc boinc 214334054 Jul 26 22:17 shared/HITS.pool.root.1
[2025-07-26 22:18:32]  *** Contents of shared directory: ***
[2025-07-26 22:18:32] total 437896
[2025-07-26 22:18:32] -rw-r--r-- 3 boinc boinc 231962389 Jul 26 15:08 ATLAS.root_0
[2025-07-26 22:18:32] -rw-r--r-- 2 boinc boinc     15095 Jul 26 15:08 start_atlas.sh
[2025-07-26 22:18:32] -rw-r--r-- 2 boinc boinc    542875 Jul 26 15:08 input.tar.gz
[2025-07-26 22:18:32] -rw------- 1 boinc boinc 214334054 Jul 26 22:17 HITS.pool.root.1
[2025-07-26 22:18:32] -rw------- 1 boinc boinc   1536000 Jul 26 22:18 result.tar.gz
22:18:33 (80617): run_atlas exited; CPU time 49709.745667
22:18:33 (80617): called boinc_finish(0)

</stderr_txt>
]]>

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