Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:32:05 (3161438): wrapper (7.7.26015): starting
10:32:05 (3161438): wrapper: running run_atlas (--nthreads 8)
[2025-07-24 10:32:05] Arguments: --nthreads 8
[2025-07-24 10:32:05] Threads: 8
[2025-07-24 10:32:05] Checking for CVMFS
[2025-07-24 10:32:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-24 10:32:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-24 10:32:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-24 10:32:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-24 10:32:08] 2.11.3.0 153215 474893 215464 148709 2 270 33812309 45568000 14182 130560 0 2398340802 99.766 1853430464 19733 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-07-24 10:32:08] CVMFS is ok
[2025-07-24 10:32:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 10:32:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 10:32:08] Further information can be found at the LHC@home message board.
[2025-07-24 10:32:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 10:32:08] Checking for apptainer binary...
[2025-07-24 10:32:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-24 10:32:08] Running /usr/bin/apptainer --version
[2025-07-24 10:32:08] apptainer version 1.3.3-1.el9
[2025-07-24 10:32:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 10:32:08] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0018.triumf.lcg
[2025-07-24 10:32:08] apptainer works
[2025-07-24 10:32:09] Set ATHENA_PROC_NUMBER=8
[2025-07-24 10:32:09] Set ATHENA_CORE_NUMBER=8
[2025-07-24 10:32:09] Starting ATLAS job with PandaID=6744843525
[2025-07-24 10:32:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 10:37:59]  *** The last 200 lines of the pilot log: ***
[2025-07-24 10:37:59] 2025-07-24 17:37:23,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 10:37:59] 2025-07-24 17:37:23,273 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 10:37:59] 2025-07-24 17:37:23,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | WARNING  | wrong length of table data, x=[1753378456.0], y=[1478.0] (must be same and length>=4)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | ..............................
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . Timing measurements:
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . get job = 0 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . initial setup = 7 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . payload setup = 23 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . stage-in = 0 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | . payload execution = 53 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | . stage-out = 2 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | . log creation = 0 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | ..............................
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 10:37:59] 2025-07-24 17:37:23,295 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744843525/pilotlog.txt
[2025-07-24 10:37:59] 2025-07-24 17:37:23,344 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-24 10:37:59] - Log from pilotlog.txt -
[2025-07-24 10:37:59] 2025-07-24 17:37:23,250 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744843525/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,272 | INFO     | extracted standard info from prmon json
[2025-07-24 10:37:59] 2025-07-24 17:37:23,272 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 10:37:59] 2025-07-24 17:37:23,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 10:37:59] 2025-07-24 17:37:23,273 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 10:37:59] 2025-07-24 17:37:23,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | WARNING  | wrong length of table data, x=[1753378456.0], y=[1478.0] (must be same and length>=4)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | ..............................
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . Timing measurements:
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . get job = 0 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . initial setup = 7 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . payload setup = 23 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . stage-in = 0 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | . payload execution = 53 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | . stage-out = 2 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | . log creation = 0 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | ..............................
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 10:37:59] 2025-07-24 17:37:23,295 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744843525/pilotlog.txt
[2025-07-24 10:37:59] 2025-07-24 17:37:23,353 | WARNING  | 
[2025-07-24 10:37:59] [begin log extracts]
[2025-07-24 10:37:59] - Log from pilotlog.txt -
[2025-07-24 10:37:59] 2025-07-24 17:37:23,250 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6744843525/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,272 | INFO     | extracted standard info from prmon json
[2025-07-24 10:37:59] 2025-07-24 17:37:23,272 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 10:37:59] 2025-07-24 17:37:23,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 10:37:59] 2025-07-24 17:37:23,273 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 10:37:59] 2025-07-24 17:37:23,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | WARNING  | wrong length of table data, x=[1753378456.0], y=[1478.0] (must be same and length>=4)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | ..............................
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . Timing measurements:
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . get job = 0 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . initial setup = 7 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . payload setup = 23 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,274 | INFO     | . stage-in = 0 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | . payload execution = 53 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | . stage-out = 2 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | . log creation = 0 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | ..............................
[2025-07-24 10:37:59] 2025-07-24 17:37:23,275 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-24 10:37:59] 2025-07-24 17:37:23,295 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6744843525/pilotlog.txt
[2025-07-24 10:37:59] [end log extracts]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,353 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,354 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-24 10:37:59] 2025-07-24 17:37:23,435 | INFO     | 268s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-24 10:37:59] 2025-07-24 17:37:23,650 | INFO     | 
[2025-07-24 10:37:59] 2025-07-24 17:37:23,650 | INFO     | job summary report
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | --------------------------------------------------
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | PanDA job id: 6744843525
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | task id: 45743349
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-24 10:34:44,044 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | pilot state: failed 
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | transexitcode: 65
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | exeerrorcode: 65
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | exitcode: 65
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,651 | INFO     | cpuconsumptiontime: 17 s
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | nevents: 0
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | neventsw: 0
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | pid: 3171365
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | pgrp: 3171365
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | corecount: 8
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | event service: False
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | sizes: {0: 2396639, 1: 2397321, 2: 2397520, 13: 2397520, 18: 2397838, 24: 2397866, 81: 2421297, 82: 2421273, 85: 2425621, 86: 2425649, 225: 2425815}
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | --------------------------------------------------
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | 
[2025-07-24 10:37:59] 2025-07-24 17:37:23,652 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-24 10:37:59] 2025-07-24 17:37:23,700 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,701 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,724 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,724 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,725 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,725 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,725 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,725 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,725 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,756 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,756 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,756 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,757 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 10:37:59] 2025-07-24 17:37:23,757 | INFO     | job 6744843525 has completed (purged errors)
[2025-07-24 10:37:59] 2025-07-24 17:37:23,757 | INFO     | overall cleanup function is called
[2025-07-24 10:37:59] 2025-07-24 17:37:24,764 | INFO     | --- collectZombieJob: --- 10, [3171365]
[2025-07-24 10:37:59] 2025-07-24 17:37:24,764 | INFO     | zombie collector waiting for pid 3171365
[2025-07-24 10:37:59] 2025-07-24 17:37:24,764 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 10:37:59] 2025-07-24 17:37:24,765 | INFO     | collected zombie processes
[2025-07-24 10:37:59] 2025-07-24 17:37:24,765 | INFO     | will attempt to kill all subprocesses of pid=3171365
[2025-07-24 10:37:59] 2025-07-24 17:37:25,073 | INFO     | process IDs to be killed: [3171365] (in reverse order)
[2025-07-24 10:37:59] 2025-07-24 17:37:25,497 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 10:37:59] 2025-07-24 17:37:25,497 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 10:37:59] 2025-07-24 17:37:25,509 | INFO     | did not find any defunct processes belonging to 3171365
[2025-07-24 10:37:59] 2025-07-24 17:37:25,527 | INFO     | did not find any defunct processes belonging to 3171365
[2025-07-24 10:37:59] 2025-07-24 17:37:25,528 | INFO     | ready for new job
[2025-07-24 10:37:59] 2025-07-24 17:37:25,543 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 10:37:59] 2025-07-24 17:37:25,545 | INFO     | ***************************************
[2025-07-24 10:37:59] 2025-07-24 17:37:25,545 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 10:37:59] 2025-07-24 17:37:25,545 | INFO     | ***************************************
[2025-07-24 10:37:59] 2025-07-24 17:37:25,545 | INFO     | 
[2025-07-24 10:37:59] 2025-07-24 17:37:25,560 | INFO     | architecture information:
[2025-07-24 10:37:59] 2025-07-24 17:37:25,576 | INFO     | executing command: cat /etc/os-release
[2025-07-24 10:37:59] 2025-07-24 17:37:25,742 | INFO     | cat /etc/os-release:
[2025-07-24 10:37:59] NAME="CentOS Linux"
[2025-07-24 10:37:59] VERSION="7 (Core)"
[2025-07-24 10:37:59] ID="centos"
[2025-07-24 10:37:59] ID_LIKE="rhel fedora"
[2025-07-24 10:37:59] VERSION_ID="7"
[2025-07-24 10:37:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 10:37:59] ANSI_COLOR="0;31"
[2025-07-24 10:37:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 10:37:59] HOME_URL="https://www.centos.org/"
[2025-07-24 10:37:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 10:37:59] 
[2025-07-24 10:37:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 10:37:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 10:37:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 10:37:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 10:37:59] 
[2025-07-24 10:37:59] 2025-07-24 17:37:25,742 | INFO     | ***************************************
[2025-07-24 10:37:59] 2025-07-24 17:37:26,246 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-24 10:37:59] 2025-07-24 17:37:26,423 | INFO     | sufficient remaining disk space (1247518130176 B)
[2025-07-24 10:37:59] 2025-07-24 17:37:26,423 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 10:37:59] 2025-07-24 17:37:26,423 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 10:37:59] 2025-07-24 17:37:26,423 | INFO     | update_server=False
[2025-07-24 10:37:59] 2025-07-24 17:37:26,423 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 10:37:59] 2025-07-24 17:37:26,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 10:37:59] 2025-07-24 17:37:26,446 | INFO     | aborting loop
[2025-07-24 10:37:59] 2025-07-24 17:37:26,981 | INFO     | all data control threads have been joined
[2025-07-24 10:37:59] 2025-07-24 17:37:27,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 10:37:59] 2025-07-24 17:37:27,429 | INFO     | [job] retrieve thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:27,453 | INFO     | [job] job monitor thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:27,883 | INFO     | all payload control threads have been joined
[2025-07-24 10:37:59] 2025-07-24 17:37:27,987 | INFO     | [data] control thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:28,027 | INFO     | all job control threads have been joined
[2025-07-24 10:37:59] 2025-07-24 17:37:28,113 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:28,363 | INFO     | [payload] validate_post thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:28,539 | INFO     | [job] validate thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:28,618 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:28,620 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:28,623 | INFO     | [data] copytool_in thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:28,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 10:37:59] 2025-07-24 17:37:28,771 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:28,890 | INFO     | [payload] control thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:29,012 | INFO     | [payload] failed_post thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:29,033 | INFO     | [job] control thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:29,099 | INFO     | [data] copytool_out thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:29,671 | INFO     | [job] queue monitor thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:29,895 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 10:37:59] 2025-07-24 17:37:33,905 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 10:37:59] 2025-07-24 17:37:36,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140063554955072)>', '<ExcThread(monitor, started 140062557722368)>']
[2025-07-24 10:37:59] 2025-07-24 17:37:41,040 | INFO     | all workflow threads have been joined
[2025-07-24 10:37:59] 2025-07-24 17:37:41,040 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 10:37:59] 2025-07-24 17:37:41,041 | INFO     | traces error code: 0
[2025-07-24 10:37:59] 2025-07-24 17:37:41,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 10:37:59] 2025-07-24 17:37:57,412 | INFO     | PID=3165038 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 10:37:59] 2025-07-24 17:37:57,413 | INFO     | .. there are 26 such processes running
[2025-07-24 10:37:59] 2025-07-24 17:37:57,413 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 10:37:59] 2025-07-24 17:37:57,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 10:37:59] 2025-07-24 17:37:57,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 10:37:59] 2025-07-24 17:37:57,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 10:37:59] 2025-07-24 17:37:57,413 | INFO     | [monitor] control thread has ended
[2025-07-24 10:37:59] 2025-07-24 17:37:58,005 [wrapper] ==== pilot stdout END ====
[2025-07-24 10:37:59] 2025-07-24 17:37:58,047 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 10:37:59] 2025-07-24 17:37:58,075 [wrapper] pilotpid: 3165038
[2025-07-24 10:37:59] 2025-07-24 17:37:58,109 [wrapper] Pilot exit status: 0
[2025-07-24 10:37:59] 2025-07-24 17:37:58,226 [wrapper] pandaids: 6744843525
[2025-07-24 10:37:59] 2025-07-24 17:37:58,504 [wrapper] cleanup supervisor_pilot 3165044 3165039
[2025-07-24 10:37:59] 2025-07-24 17:37:58,561 [wrapper] Test setup, not cleaning
[2025-07-24 10:37:59] 2025-07-24 17:37:58,590 [wrapper] apfmon messages muted
[2025-07-24 10:37:59] 2025-07-24 17:37:58,611 [wrapper] ==== wrapper stdout END ====
[2025-07-24 10:37:59] 2025-07-24 17:37:58,630 [wrapper] ==== wrapper stderr END ====
[2025-07-24 10:37:59]  *** Error codes and diagnostics ***
[2025-07-24 10:37:59]     "exeErrorCode": 65,
[2025-07-24 10:37:59]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 10:37:59]     "pilotErrorCode": 1305,
[2025-07-24 10:37:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-24 10:37:59]  *** Listing of results directory ***
[2025-07-24 10:37:59] total 148796
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc    530466 Jul 24 10:03 pilot3.tar.gz
[2025-07-24 10:37:59] -rwx------. 1 boinc boinc     36292 Jul 24 10:17 runpilot2-wrapper.sh
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc      5112 Jul 24 10:17 queuedata.json
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc       100 Jul 24 10:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 10:37:59] -rwxr-xr-x. 1 boinc boinc      7986 Jul 24 10:32 run_atlas
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc       105 Jul 24 10:32 job.xml
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc      6448 Jul 24 10:32 init_data.xml
[2025-07-24 10:37:59] -rw-r--r--. 2 boinc boinc 148287532 Jul 24 10:32 EVNT.45743347._000170.pool.root.1
[2025-07-24 10:37:59] -rw-r--r--. 2 boinc boinc     15095 Jul 24 10:32 start_atlas.sh
[2025-07-24 10:37:59] drwxrwx--x. 2 boinc boinc      4096 Jul 24 10:32 shared
[2025-07-24 10:37:59] -rw-r--r--. 2 boinc boinc    542883 Jul 24 10:32 input.tar.gz
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc         0 Jul 24 10:32 boinc_lockfile
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc      2559 Jul 24 10:32 pandaJob.out
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc    979677 Jul 24 10:32 agis_schedconf.cvmfs.json
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc   1593052 Jul 24 10:32 agis_ddmendpoints.agis.ALL.json
[2025-07-24 10:37:59] drwx------. 4 boinc boinc      4096 Jul 24 10:33 pilot3
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc       524 Jul 24 10:34 boinc_task_state.xml
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc       949 Jul 24 10:34 memory_monitor_summary.json
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc     21780 Jul 24 10:35 log.45743349._003081.job.log.tgz.1
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc        95 Jul 24 10:37 pilot_heartbeat.json
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc      8407 Jul 24 10:37 heartbeat.json
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc      8192 Jul 24 10:37 boinc_mmap_file
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc        23 Jul 24 10:37 wrapper_checkpoint.txt
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc       823 Jul 24 10:37 pilotlog.txt
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc     81671 Jul 24 10:37 log.45743349._003081.job.log.1
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc       188 Jul 24 10:37 output.list
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc       620 Jul 24 10:37 runtime_log
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc    122880 Jul 24 10:37 result.tar.gz
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc      8648 Jul 24 10:37 runtime_log.err
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc       645 Jul 24 10:37 kKFODmgkEz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmx0wKDmxjhfFm.diag
[2025-07-24 10:37:59] -rw-r--r--. 1 boinc boinc     21974 Jul 24 10:37 stderr.txt
[2025-07-24 10:37:59] No HITS result produced
[2025-07-24 10:37:59]  *** Contents of shared directory: ***
[2025-07-24 10:37:59] total 145484
[2025-07-24 10:37:59] -rw-r--r--. 2 boinc boinc 148287532 Jul 24 10:32 ATLAS.root_0
[2025-07-24 10:37:59] -rw-r--r--. 2 boinc boinc     15095 Jul 24 10:32 start_atlas.sh
[2025-07-24 10:37:59] -rw-r--r--. 2 boinc boinc    542883 Jul 24 10:32 input.tar.gz
[2025-07-24 10:37:59] -rw-------. 1 boinc boinc    122880 Jul 24 10:37 result.tar.gz
10:38:01 (3161438): run_atlas exited; CPU time 28.128582
10:38:01 (3161438): called boinc_finish(0)

</stderr_txt>
]]>

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