Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:29:03 (1593629): wrapper (7.7.26015): starting
11:29:03 (1593629): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 11:29:03] Arguments: --nthreads 4
[2025-07-27 11:29:03] Threads: 4
[2025-07-27 11:29:03] Checking for CVMFS
[2025-07-27 11:29:03] No cvmfs_config command found, will try listing directly
[2025-07-27 11:29:03] CVMFS is ok
[2025-07-27 11:29:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:29:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 11:29:03] Further information can be found at the LHC@home message board.
[2025-07-27 11:29:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:29:03] Checking for apptainer binary...
[2025-07-27 11:29:03] which: no apptainer in ((null))
[2025-07-27 11:29:03] apptainer is not installed, using version from CVMFS
[2025-07-27 11:29:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:29:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-07-27 11:29:04] apptainer works
[2025-07-27 11:29:04] Set ATHENA_PROC_NUMBER=4
[2025-07-27 11:29:04] Set ATHENA_CORE_NUMBER=4
[2025-07-27 11:29:04] Starting ATLAS job with PandaID=6744770522
[2025-07-27 11:29:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:53:25 (1772823): wrapper (7.7.26015): starting
13:53:25 (1772823): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 13:53:25] Arguments: --nthreads 4
[2025-07-27 13:53:25] Threads: 4
[2025-07-27 13:53:25] This job has been restarted, cleaning up previous attempt
[2025-07-27 13:53:25] Checking for CVMFS
[2025-07-27 13:53:25] No cvmfs_config command found, will try listing directly
[2025-07-27 13:53:25] CVMFS is ok
[2025-07-27 13:53:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:53:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:53:25] Further information can be found at the LHC@home message board.
[2025-07-27 13:53:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:53:25] Checking for apptainer binary...
[2025-07-27 13:53:25] which: no apptainer in ((null))
[2025-07-27 13:53:25] apptainer is not installed, using version from CVMFS
[2025-07-27 13:53:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:53:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-07-27 13:53:26] apptainer works
[2025-07-27 13:53:26] Set ATHENA_PROC_NUMBER=4
[2025-07-27 13:53:26] Set ATHENA_CORE_NUMBER=4
[2025-07-27 13:53:26] Starting ATLAS job with PandaID=6744770522
[2025-07-27 13:53:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:56:21]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:56:21] 2025-07-27 15:55:45,360 | INFO     | executing command: lscpu
[2025-07-27 17:56:21] 2025-07-27 15:55:45,396 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:56:21] 2025-07-27 15:55:46,748 | INFO     | monitor loop #1061: job 0:6744770522 is in state 'finished'
[2025-07-27 17:56:21] 2025-07-27 15:55:46,748 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:56:21] 2025-07-27 15:55:48,903 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:56:21] 2025-07-27 15:55:48,911 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2538.3395
[2025-07-27 17:56:21] 2025-07-27 15:55:48,919 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6744770522/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:56:21] 2025-07-27 15:55:48,919 | INFO     | extracted standard info from prmon json
[2025-07-27 17:56:21] 2025-07-27 15:55:48,920 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:56:21] 2025-07-27 15:55:48,920 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:56:21] 2025-07-27 15:55:48,920 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:56:21] 2025-07-27 15:55:48,920 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:56:21] 2025-07-27 15:55:48,925 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:56:21] 2025-07-27 15:55:48,926 | INFO     | sum of square deviations: 4180243959.5
[2025-07-27 17:56:21] 2025-07-27 15:55:48,928 | INFO     | sum of deviations: -5547391788.999999
[2025-07-27 17:56:21] 2025-07-27 15:55:48,928 | INFO     | mean x: 1753624471.5
[2025-07-27 17:56:21] 2025-07-27 15:55:48,928 | INFO     | mean y: 2352861.1764705884
[2025-07-27 17:56:21] 2025-07-27 15:55:48,928 | INFO     | -- intersect: 2329499814.425615
[2025-07-27 17:56:21] 2025-07-27 15:55:48,928 | INFO     | intersect: 2329499814.425615
[2025-07-27 17:56:21] 2025-07-27 15:55:48,929 | INFO     | chi2: 1.569671866574021
[2025-07-27 17:56:21] 2025-07-27 15:55:48,929 | INFO     | sum of square deviations: 3922276332.0
[2025-07-27 17:56:21] 2025-07-27 15:55:48,931 | INFO     | sum of deviations: -5533288039.999997
[2025-07-27 17:56:21] 2025-07-27 15:55:48,931 | INFO     | mean x: 1753624319.0
[2025-07-27 17:56:21] 2025-07-27 15:55:48,931 | INFO     | mean y: 2352869.5193133047
[2025-07-27 17:56:21] 2025-07-27 15:55:48,932 | INFO     | -- intersect: 2476250078.5994406
[2025-07-27 17:56:21] 2025-07-27 15:55:48,932 | INFO     | intersect: 2476250078.5994406
[2025-07-27 17:56:21] 2025-07-27 15:55:48,932 | INFO     | chi2: 1.569085567209671
[2025-07-27 17:56:21] 2025-07-27 15:55:48,932 | INFO     | current chi2=1.569085567209671 (change=0.03735171514729466 %)
[2025-07-27 17:56:21] 2025-07-27 15:55:48,932 | INFO     | right removable region: 232
[2025-07-27 17:56:21] 2025-07-27 15:55:48,933 | INFO     | sum of square deviations: 3922276332.0
[2025-07-27 17:56:21] 2025-07-27 15:55:48,935 | INFO     | sum of deviations: -31224114285.999992
[2025-07-27 17:56:21] 2025-07-27 15:55:48,935 | INFO     | mean x: 1753624624.0
[2025-07-27 17:56:21] 2025-07-27 15:55:48,935 | INFO     | mean y: 2367823.081545064
[2025-07-27 17:56:21] 2025-07-27 15:55:48,935 | INFO     | -- intersect: 13962469315.11476
[2025-07-27 17:56:21] 2025-07-27 15:55:48,935 | INFO     | intersect: 13962469315.11476
[2025-07-27 17:56:21] 2025-07-27 15:55:48,936 | INFO     | chi2: 0.30174878461885524
[2025-07-27 17:56:21] 2025-07-27 15:55:48,936 | INFO     | current chi2=0.30174878461885524 (change=80.77631439764194 %)
[2025-07-27 17:56:21] 2025-07-27 15:55:48,936 | INFO     | sum of square deviations: 3675146117.0
[2025-07-27 17:56:21] 2025-07-27 15:55:48,938 | INFO     | sum of deviations: -20669276203.500008
[2025-07-27 17:56:21] 2025-07-27 15:55:48,938 | INFO     | mean x: 1753624776.5
[2025-07-27 17:56:21] 2025-07-27 15:55:48,938 | INFO     | mean y: 2361296.24122807
[2025-07-27 17:56:21] 2025-07-27 15:55:48,938 | INFO     | -- intersect: 9864868448.02952
[2025-07-27 17:56:21] 2025-07-27 15:55:48,938 | INFO     | intersect: 9864868448.02952
[2025-07-27 17:56:21] 2025-07-27 15:55:48,939 | INFO     | chi2: 0.24761233366855995
[2025-07-27 17:56:21] 2025-07-27 15:55:48,939 | INFO     | current chi2=0.24761233366855995 (change=17.940901077257394 %)
[2025-07-27 17:56:21] 2025-07-27 15:55:48,939 | INFO     | left removable region: 20
[2025-07-27 17:56:21] 2025-07-27 15:55:48,940 | INFO     | sum of square deviations: 2954447953.0
[2025-07-27 17:56:21] 2025-07-27 15:55:48,941 | INFO     | sum of deviations: 4088826126.5
[2025-07-27 17:56:21] 2025-07-27 15:55:48,941 | INFO     | mean x: 1753624898.5
[2025-07-27 17:56:21] 2025-07-27 15:55:48,941 | INFO     | mean y: 2344538.183962264
[2025-07-27 17:56:21] 2025-07-27 15:55:48,942 | INFO     | -- intersect: -2424595253.9984965
[2025-07-27 17:56:21] 2025-07-27 15:55:48,942 | INFO     | intersect: -2424595253.9984965
[2025-07-27 17:56:21] 2025-07-27 15:55:48,942 | INFO     | chi2: 0.03127172780396908
[2025-07-27 17:56:21] 2025-07-27 15:55:48,942 | INFO     | -- intersect: -2424595253.9984965
[2025-07-27 17:56:21] 2025-07-27 15:55:48,942 | INFO     | current memory leak: 1.38 B/s (using 212 data points, chi2=0.03)
[2025-07-27 17:56:21] 2025-07-27 15:55:48,943 | INFO     | could have reported an average CPU frequency of 2557 MHz (12 samples)
[2025-07-27 17:56:21] 2025-07-27 15:55:48,943 | INFO     | ..............................
[2025-07-27 17:56:21] 2025-07-27 15:55:48,943 | INFO     | . Timing measurements:
[2025-07-27 17:56:21] 2025-07-27 15:55:48,944 | INFO     | . get job = 0 s
[2025-07-27 17:56:21] 2025-07-27 15:55:48,944 | INFO     | . initial setup = 1 s
[2025-07-27 17:56:21] 2025-07-27 15:55:48,944 | INFO     | . payload setup = 6 s
[2025-07-27 17:56:21] 2025-07-27 15:55:48,944 | INFO     | . stage-in = 0 s
[2025-07-27 17:56:21] 2025-07-27 15:55:48,944 | INFO     | . payload execution = 14498 s
[2025-07-27 17:56:21] 2025-07-27 15:55:48,944 | INFO     | . stage-out = 1 s
[2025-07-27 17:56:21] 2025-07-27 15:55:48,945 | INFO     | . log creation = 0 s
[2025-07-27 17:56:21] 2025-07-27 15:55:48,945 | INFO     | ..............................
[2025-07-27 17:56:21] 2025-07-27 15:55:49,056 | INFO     | 
[2025-07-27 17:56:21] 2025-07-27 15:55:49,057 | INFO     | job summary report
[2025-07-27 17:56:21] 2025-07-27 15:55:49,057 | INFO     | --------------------------------------------------
[2025-07-27 17:56:21] 2025-07-27 15:55:49,057 | INFO     | PanDA job id: 6744770522
[2025-07-27 17:56:21] 2025-07-27 15:55:49,057 | INFO     | task id: 45743349
[2025-07-27 17:56:21] 2025-07-27 15:55:49,057 | INFO     | errors: (none)
[2025-07-27 17:56:21] 2025-07-27 15:55:49,057 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:56:21] 2025-07-27 15:55:49,057 | INFO     | pilot state: finished 
[2025-07-27 17:56:21] 2025-07-27 15:55:49,057 | INFO     | transexitcode: 0
[2025-07-27 17:56:21] 2025-07-27 15:55:49,058 | INFO     | exeerrorcode: 0
[2025-07-27 17:56:21] 2025-07-27 15:55:49,058 | INFO     | exeerrordiag: 
[2025-07-27 17:56:21] 2025-07-27 15:55:49,058 | INFO     | exitcode: 0
[2025-07-27 17:56:21] 2025-07-27 15:55:49,058 | INFO     | exitmsg: OK
[2025-07-27 17:56:21] 2025-07-27 15:55:49,058 | INFO     | cpuconsumptiontime: 55875 s
[2025-07-27 17:56:21] 2025-07-27 15:55:49,058 | INFO     | nevents: 400
[2025-07-27 17:56:21] 2025-07-27 15:55:49,058 | INFO     | neventsw: 0
[2025-07-27 17:56:21] 2025-07-27 15:55:49,059 | INFO     | pid: 1783637
[2025-07-27 17:56:21] 2025-07-27 15:55:49,059 | INFO     | pgrp: 1783637
[2025-07-27 17:56:21] 2025-07-27 15:55:49,059 | INFO     | corecount: 4
[2025-07-27 17:56:21] 2025-07-27 15:55:49,059 | INFO     | event service: False
[2025-07-27 17:56:21] 2025-07-27 15:55:49,059 | INFO     | sizes: {0: 2396640, 1: 2397507, 5: 2397769, 12: 2397825, 14509: 2428742, 14511: 2437762, 14513: 2437946, 14518: 2438140}
[2025-07-27 17:56:21] 2025-07-27 15:55:49,059 | INFO     | --------------------------------------------------
[2025-07-27 17:56:21] 2025-07-27 15:55:49,059 | INFO     | 
[2025-07-27 17:56:21] 2025-07-27 15:55:49,060 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2025-07-27 17:56:21] 2025-07-27 15:55:49,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,079 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,079 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,079 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:56:21] 2025-07-27 15:55:49,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,080 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:56:21] 2025-07-27 15:55:49,080 | INFO     | job 6744770522 has completed (purged errors)
[2025-07-27 17:56:21] 2025-07-27 15:55:49,081 | INFO     | overall cleanup function is called
[2025-07-27 17:56:21] 2025-07-27 15:55:50,089 | INFO     | --- collectZombieJob: --- 10, [1783637]
[2025-07-27 17:56:21] 2025-07-27 15:55:50,089 | INFO     | zombie collector waiting for pid 1783637
[2025-07-27 17:56:21] 2025-07-27 15:55:50,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:56:21] 2025-07-27 15:55:50,089 | INFO     | collected zombie processes
[2025-07-27 17:56:21] 2025-07-27 15:55:50,090 | INFO     | will attempt to kill all subprocesses of pid=1783637
[2025-07-27 17:56:21] 2025-07-27 15:55:50,396 | INFO     | process IDs to be killed: [1783637] (in reverse order)
[2025-07-27 17:56:21] 2025-07-27 15:55:50,475 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:56:21] 2025-07-27 15:55:50,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:56:21] 2025-07-27 15:55:50,482 | INFO     | did not find any defunct processes belonging to 1783637
[2025-07-27 17:56:21] 2025-07-27 15:55:50,489 | INFO     | did not find any defunct processes belonging to 1783637
[2025-07-27 17:56:21] 2025-07-27 15:55:50,489 | INFO     | ready for new job
[2025-07-27 17:56:21] 2025-07-27 15:55:50,489 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:56:21] 2025-07-27 15:55:50,491 | INFO     | ***************************************
[2025-07-27 17:56:21] 2025-07-27 15:55:50,491 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:56:21] 2025-07-27 15:55:50,491 | INFO     | ***************************************
[2025-07-27 17:56:21] 2025-07-27 15:55:50,491 | INFO     | 
[2025-07-27 17:56:21] 2025-07-27 15:55:50,494 | INFO     | architecture information:
[2025-07-27 17:56:21] 2025-07-27 15:55:50,494 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:56:21] 2025-07-27 15:55:50,509 | INFO     | cat /etc/os-release:
[2025-07-27 17:56:21] NAME="CentOS Linux"
[2025-07-27 17:56:21] VERSION="7 (Core)"
[2025-07-27 17:56:21] ID="centos"
[2025-07-27 17:56:21] ID_LIKE="rhel fedora"
[2025-07-27 17:56:21] VERSION_ID="7"
[2025-07-27 17:56:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:56:21] ANSI_COLOR="0;31"
[2025-07-27 17:56:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:56:21] HOME_URL="https://www.centos.org/"
[2025-07-27 17:56:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:56:21] 
[2025-07-27 17:56:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:56:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:56:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:56:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:56:21] 
[2025-07-27 17:56:21] 2025-07-27 15:55:50,509 | INFO     | ***************************************
[2025-07-27 17:56:21] 2025-07-27 15:55:51,012 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2025-07-27 17:56:21] 2025-07-27 15:55:51,025 | INFO     | sufficient remaining disk space (1647070674944 B)
[2025-07-27 17:56:21] 2025-07-27 15:55:51,025 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:56:21] 2025-07-27 15:55:51,026 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:56:21] 2025-07-27 15:55:51,026 | INFO     | update_server=False
[2025-07-27 17:56:21] 2025-07-27 15:55:51,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:56:21] 2025-07-27 15:55:51,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:56:21] 2025-07-27 15:55:51,026 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:56:21] 2025-07-27 15:55:51,027 | INFO     | aborting loop
[2025-07-27 17:56:21] 2025-07-27 15:55:51,027 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:56:21] 2025-07-27 15:55:51,074 | INFO     | all job control threads have been joined
[2025-07-27 17:56:21] 2025-07-27 15:55:51,827 | INFO     | all data control threads have been joined
[2025-07-27 17:56:21] 2025-07-27 15:55:52,031 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:52,032 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:52,032 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:52,069 | INFO     | all payload control threads have been joined
[2025-07-27 17:56:21] 2025-07-27 15:55:52,079 | INFO     | [job] control thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:52,162 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:52,240 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:52,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:56:21] 2025-07-27 15:55:52,772 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:52,788 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:52,833 | INFO     | [data] control thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:52,909 | INFO     | [job] validate thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:53,075 | INFO     | [payload] control thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:53,168 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:53,435 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:53,461 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:54,370 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:55,033 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:56:21] 2025-07-27 15:55:56,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22419144861504)>', '<ExcThread(monitor, started 22418898757376)>']
[2025-07-27 17:56:21] 2025-07-27 15:56:01,285 | INFO     | all workflow threads have been joined
[2025-07-27 17:56:21] 2025-07-27 15:56:01,286 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:56:21] 2025-07-27 15:56:01,286 | INFO     | traces error code: 0
[2025-07-27 17:56:21] 2025-07-27 15:56:01,286 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:56:21] 2025-07-27 15:56:21,608 | INFO     | PID=1776738 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:56:21] 2025-07-27 15:56:21,608 | INFO     | .. there are 7 such processes running
[2025-07-27 17:56:21] 2025-07-27 15:56:21,609 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:56:21] 2025-07-27 15:56:21,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:56:21] 2025-07-27 15:56:21,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:56:21] 2025-07-27 15:56:21,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:56:21] 2025-07-27 15:56:21,609 | INFO     | [monitor] control thread has ended
[2025-07-27 17:56:21] 2025-07-27 15:56:21,722 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:56:21] 2025-07-27 15:56:21,724 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:56:21] 2025-07-27 15:56:21,727 [wrapper] pilotpid: 1776738
[2025-07-27 17:56:21] 2025-07-27 15:56:21,729 [wrapper] Pilot exit status: 0
[2025-07-27 17:56:21] 2025-07-27 15:56:21,739 [wrapper] pandaids: 6744770522 6744770522
[2025-07-27 17:56:21] 2025-07-27 15:56:21,789 [wrapper] cleanup supervisor_pilot 2178959 1776739
[2025-07-27 17:56:21] 2025-07-27 15:56:21,791 [wrapper] Test setup, not cleaning
[2025-07-27 17:56:21] 2025-07-27 15:56:21,793 [wrapper] apfmon messages muted
[2025-07-27 17:56:21] 2025-07-27 15:56:21,796 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:56:21] 2025-07-27 15:56:21,798 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:56:21]  *** Error codes and diagnostics ***
[2025-07-27 17:56:21]     "exeErrorCode": 0,
[2025-07-27 17:56:21]     "exeErrorDiag": "",
[2025-07-27 17:56:21]     "pilotErrorCode": 0,
[2025-07-27 17:56:21]     "pilotErrorDiag": "",
[2025-07-27 17:56:21]  *** Listing of results directory ***
[2025-07-27 17:56:21] total 500832
[2025-07-27 17:56:21] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc    530466 Jul 24 17:17 pilot3.tar.gz
[2025-07-27 17:56:21] -rwx------ 1 boinc boinc     36292 Jul 24 17:21 runpilot2-wrapper.sh
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc      5112 Jul 24 17:21 queuedata.json
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc       100 Jul 27 11:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:56:21] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 11:28 run_atlas
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc       105 Jul 27 11:28 job.xml
[2025-07-27 17:56:21] -rw-r--r-- 3 boinc boinc 149300658 Jul 27 11:29 EVNT.45743347._000081.pool.root.1
[2025-07-27 17:56:21] -rw-r--r-- 3 boinc boinc 149300658 Jul 27 11:29 ATLAS.root_0
[2025-07-27 17:56:21] drwxrwx--x 2 boinc boinc      4096 Jul 27 11:29 shared
[2025-07-27 17:56:21] -rw-r--r-- 2 boinc boinc    542871 Jul 27 11:29 input.tar.gz
[2025-07-27 17:56:21] -rw-r--r-- 2 boinc boinc     15095 Jul 27 11:29 start_atlas.sh
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc         0 Jul 27 11:29 boinc_lockfile
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc      2560 Jul 27 13:53 pandaJob.out
[2025-07-27 17:56:21] -rw------- 1 boinc boinc    980109 Jul 27 13:53 agis_schedconf.cvmfs.json
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc      6429 Jul 27 17:30 init_data.xml
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc       530 Jul 27 17:55 boinc_task_state.xml
[2025-07-27 17:56:21] -rw------- 1 boinc boinc 206977767 Jul 27 17:55 HITS.45743349._001492.pool.root.1
[2025-07-27 17:56:21] -rw------- 1 boinc boinc        97 Jul 27 17:55 pilot_heartbeat.json
[2025-07-27 17:56:21] -rw------- 1 boinc boinc      1035 Jul 27 17:55 memory_monitor_summary.json
[2025-07-27 17:56:21] -rw------- 1 boinc boinc   1593052 Jul 27 17:55 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:56:21] -rw------- 1 boinc boinc    336966 Jul 27 17:55 log.45743349._001492.job.log.tgz.1
[2025-07-27 17:56:21] -rw------- 1 boinc boinc      7827 Jul 27 17:55 heartbeat.json
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc      8192 Jul 27 17:56 boinc_mmap_file
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc        28 Jul 27 17:56 wrapper_checkpoint.txt
[2025-07-27 17:56:21] -rw------- 1 boinc boinc       822 Jul 27 17:56 pilotlog.txt
[2025-07-27 17:56:21] -rw------- 1 boinc boinc   1357691 Jul 27 17:56 log.45743349._001492.job.log.1
[2025-07-27 17:56:21] -rw------- 1 boinc boinc       357 Jul 27 17:56 output.list
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc       620 Jul 27 17:56 runtime_log
[2025-07-27 17:56:21] -rw------- 1 boinc boinc   1710080 Jul 27 17:56 result.tar.gz
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc      9104 Jul 27 17:56 runtime_log.err
[2025-07-27 17:56:21] -rw------- 1 boinc boinc       791 Jul 27 17:56 JVVLDmIwCz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtSMLDmNKHRmn.diag
[2025-07-27 17:56:21] -rw-r--r-- 1 boinc boinc     22930 Jul 27 17:56 stderr.txt
[2025-07-27 17:56:21] HITS file was successfully produced:
[2025-07-27 17:56:21] -rw------- 1 boinc boinc 206977767 Jul 27 17:55 shared/HITS.pool.root.1
[2025-07-27 17:56:21]  *** Contents of shared directory: ***
[2025-07-27 17:56:21] total 350160
[2025-07-27 17:56:21] -rw-r--r-- 3 boinc boinc 149300658 Jul 27 11:29 ATLAS.root_0
[2025-07-27 17:56:21] -rw-r--r-- 2 boinc boinc    542871 Jul 27 11:29 input.tar.gz
[2025-07-27 17:56:21] -rw-r--r-- 2 boinc boinc     15095 Jul 27 11:29 start_atlas.sh
[2025-07-27 17:56:21] -rw------- 1 boinc boinc 206977767 Jul 27 17:55 HITS.pool.root.1
[2025-07-27 17:56:21] -rw------- 1 boinc boinc   1710080 Jul 27 17:56 result.tar.gz
17:56:22 (1772823): run_atlas exited; CPU time 56420.121212
17:56:22 (1772823): called boinc_finish(0)

</stderr_txt>
]]>

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